Wall clock time and date at job start Tue Mar 31 2020 16:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46861 * 2 1 4 4 N 1.46497 * 109.47427 * 120.00036 * 2 1 3 5 5 C 1.46495 * 120.00432 * 305.17284 * 4 2 1 6 6 C 1.50705 * 109.46754 * 269.99903 * 5 4 2 7 7 H 1.07990 * 120.00198 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99503 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00373 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99732 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46801 * 60.00463 * 10 8 6 12 12 H 1.48500 * 109.47255 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47354 * 300.00839 * 10 8 6 14 14 C 1.34781 * 119.99676 * 125.16634 * 4 2 1 15 15 O 1.21574 * 120.00003 * 185.81162 * 14 4 2 16 16 C 1.47656 * 119.99968 * 5.81745 * 14 4 2 17 17 C 1.39873 * 120.03564 * 224.65554 * 16 14 4 18 18 C 1.37526 * 120.09490 * 179.74781 * 17 16 14 19 19 C 1.39335 * 120.24886 * 0.25034 * 18 17 16 20 20 N 1.38871 * 119.50809 * 180.02562 * 19 18 17 21 21 H 0.97005 * 119.90551 * 0.02733 * 20 19 18 22 22 C 1.34809 * 120.19833 * 180.02562 * 20 19 18 23 23 O 1.21447 * 120.32691 * 180.02562 * 22 20 19 24 24 C 1.49188 * 119.35046 * 0.02562 * 22 20 19 25 25 O 1.21456 * 120.35906 * 180.02562 * 24 22 20 26 26 N 1.34851 * 119.28127 * 0.02562 * 24 22 20 27 27 H 0.97005 * 119.97055 * 180.02562 * 26 24 22 28 28 C 1.39305 * 120.05721 * 359.97438 * 26 24 22 29 29 C 1.38691 * 119.57212 * 180.02562 * 28 26 24 30 30 H 1.09006 * 109.47167 * 299.99650 * 1 2 3 31 31 H 1.09001 * 109.47696 * 59.99753 * 1 2 3 32 32 H 1.09001 * 109.47230 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46899 * 240.00668 * 2 1 3 34 34 H 1.09002 * 109.46838 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47507 * 299.99924 * 3 2 1 36 36 H 1.09000 * 109.46818 * 60.00619 * 3 2 1 37 37 H 1.09004 * 109.47360 * 29.99165 * 5 4 2 38 38 H 1.09000 * 109.47566 * 149.99907 * 5 4 2 39 39 H 0.97002 * 120.00373 * 179.97438 * 9 8 6 40 40 H 1.07993 * 119.95469 * 0.02562 * 17 16 14 41 41 H 1.07999 * 119.87324 * 180.28272 * 18 17 16 42 42 H 1.07996 * 120.03485 * 359.97179 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5736 -0.2597 2.5237 6 6 2.5162 0.7905 3.0528 7 1 3.3620 1.1051 2.4597 8 6 2.2985 1.3496 4.2942 9 7 1.2687 0.9662 5.0167 10 14 3.4671 2.6508 4.9504 11 1 3.4785 3.8156 4.0294 12 1 3.0163 3.0877 6.2962 13 1 4.8359 2.0832 5.0475 14 6 2.8769 -1.7226 1.0751 15 8 3.1999 -2.3628 2.0567 16 6 3.4250 -2.0754 -0.2498 17 6 3.4798 -3.4142 -0.6509 18 6 3.9854 -3.7438 -1.8867 19 6 4.4501 -2.7479 -2.7432 20 7 4.9570 -3.0980 -3.9878 21 1 4.9846 -4.0304 -4.2540 22 6 5.4109 -2.1458 -4.8274 23 8 5.8542 -2.4493 -5.9165 24 6 5.3633 -0.7157 -4.4054 25 8 5.7669 0.1571 -5.1474 26 7 4.8673 -0.4025 -3.1911 27 1 4.8312 0.5243 -2.9067 28 6 4.4056 -1.4085 -2.3453 29 6 3.8969 -1.0749 -1.0989 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 0.5687 0.1566 2.4529 38 1 1.5659 -1.1147 3.1997 39 1 1.1157 1.3593 5.8903 40 1 3.1205 -4.1899 0.0090 41 1 4.0217 -4.7783 -2.1945 42 1 3.8608 -0.0411 -0.7888 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523281326.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:20 Heat of formation + Delta-G solvation = -87.496067 kcal Electronic energy + Delta-G solvation = -28563.062928 eV Core-core repulsion = 24507.438036 eV Total energy + Delta-G solvation = -4055.624891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.98783 -41.31550 -39.90384 -39.75860 -37.64094 -36.84412 -36.14584 -34.87658 -32.43717 -31.75649 -30.76804 -29.12570 -28.03400 -26.95990 -25.75650 -24.38711 -24.25030 -22.74358 -20.95817 -20.38245 -19.58781 -19.21225 -18.74738 -18.54482 -17.99963 -17.60543 -17.04391 -16.89949 -16.45754 -16.26149 -15.76607 -15.44285 -15.40754 -15.21525 -14.94798 -14.71041 -14.54449 -14.14798 -13.96962 -13.83078 -13.33500 -13.24660 -13.06253 -12.82858 -12.70543 -12.53740 -12.50774 -12.41936 -12.18897 -12.09909 -11.95276 -11.64625 -11.47663 -11.34914 -10.72967 -10.56721 -9.68823 -9.44380 -9.01625 -8.16299 -6.27947 -0.48698 -0.20463 0.37763 1.15626 1.39907 1.43018 1.49186 1.54060 1.67071 1.98906 2.26432 2.44710 2.56618 2.69451 3.14293 3.30254 3.51611 3.91692 3.98760 4.05702 4.19780 4.30038 4.39620 4.44557 4.56270 4.79287 4.84716 4.88594 4.98528 5.04488 5.06631 5.15505 5.23519 5.31467 5.36380 5.39927 5.46256 5.49687 5.60919 5.67537 5.80469 5.90195 6.13549 6.16278 6.60745 6.74854 6.82805 7.30925 7.46720 8.90774 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.016802 B = 0.003333 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.024115 B = 8398.475029 C = 8918.694279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.119 3.881 3 C -0.160 4.160 4 N -0.586 5.586 5 C 0.261 3.739 6 C -0.527 4.527 7 H 0.060 0.940 8 C 0.009 3.991 9 N -0.929 5.929 10 Si 0.957 3.043 11 H -0.261 1.261 12 H -0.285 1.285 13 H -0.279 1.279 14 C 0.541 3.459 15 O -0.589 6.589 16 C -0.114 4.114 17 C -0.056 4.056 18 C -0.095 4.095 19 C 0.136 3.864 20 N -0.605 5.605 21 H 0.440 0.560 22 C 0.513 3.487 23 O -0.508 6.508 24 C 0.509 3.491 25 O -0.512 6.512 26 N -0.613 5.613 27 H 0.433 0.567 28 C 0.111 3.889 29 C -0.085 4.085 30 H 0.041 0.959 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.114 0.886 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.030 0.970 38 H -0.004 1.004 39 H 0.264 0.736 40 H 0.145 0.855 41 H 0.188 0.812 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.053 -7.265 -18.120 19.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.017 3.983 3 C -0.218 4.218 4 N -0.315 5.315 5 C 0.140 3.860 6 C -0.566 4.566 7 H 0.078 0.922 8 C -0.190 4.190 9 N -0.570 5.570 10 Si 0.783 3.217 11 H -0.185 1.185 12 H -0.210 1.210 13 H -0.204 1.204 14 C 0.330 3.670 15 O -0.470 6.470 16 C -0.119 4.119 17 C -0.076 4.076 18 C -0.115 4.115 19 C 0.036 3.964 20 N -0.254 5.254 21 H 0.283 0.717 22 C 0.295 3.705 23 O -0.380 6.380 24 C 0.292 3.708 25 O -0.384 6.384 26 N -0.262 5.262 27 H 0.276 0.724 28 C 0.013 3.987 29 C -0.106 4.106 30 H 0.060 0.940 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.014 0.986 39 H 0.073 0.927 40 H 0.163 0.837 41 H 0.205 0.795 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.646 -7.156 -18.651 20.151 hybrid contribution 0.330 0.877 1.354 1.647 sum 2.976 -6.279 -17.297 18.640 Atomic orbital electron populations 1.22120 0.94429 1.02201 1.02852 1.21600 0.95308 0.94089 0.87322 1.22227 1.00992 0.95613 1.02983 1.48273 1.43725 1.30869 1.08647 1.18740 0.94900 0.93440 0.78894 1.21657 1.11317 1.21350 1.02272 0.92215 1.25750 0.96985 0.99280 0.96972 1.70037 1.30061 1.44422 1.12440 0.85619 0.78872 0.79529 0.77710 1.18519 1.21041 1.20425 1.18820 0.79267 0.80098 0.88852 1.90755 1.61424 1.53637 1.41231 1.19664 1.03476 0.95465 0.93276 1.21130 0.96321 0.94125 0.96032 1.20879 0.98954 0.99942 0.91727 1.17573 1.00466 0.91809 0.86569 1.43400 1.56482 1.12066 1.13463 0.71684 1.20054 0.79092 0.86517 0.84865 1.90902 1.44095 1.81583 1.21393 1.20183 0.78955 0.89876 0.81835 1.90904 1.45980 1.48968 1.52578 1.43580 1.56942 1.11513 1.14127 0.72448 1.17092 1.03303 0.86520 0.91823 1.20932 0.98331 1.00717 0.90669 0.93991 0.88686 0.92627 0.86800 0.92675 0.89066 0.93340 0.95243 0.98570 0.92680 0.83677 0.79455 0.83130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 9.07 71.98 0.65 -3.37 16 2 C 0.12 3.23 2.40 44.99 0.11 3.33 16 3 C -0.16 -4.20 8.22 71.98 0.59 -3.61 16 4 N -0.59 -22.28 2.39 -805.74 -1.92 -24.20 16 5 C 0.26 13.05 4.77 85.64 0.41 13.46 16 6 C -0.53 -28.07 7.85 25.60 0.20 -27.87 16 7 H 0.06 3.08 7.59 -2.92 -0.02 3.06 16 8 C 0.01 0.49 5.46 84.66 0.46 0.95 16 9 N -0.93 -54.29 13.29 21.45 0.28 -54.00 16 10 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 11 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 C 0.54 20.36 7.23 86.73 0.63 20.99 16 15 O -0.59 -28.32 16.53 -3.95 -0.07 -28.39 16 16 C -0.11 -2.81 4.93 -20.10 -0.10 -2.91 16 17 C -0.06 -0.99 9.66 22.50 0.22 -0.78 16 18 C -0.09 -0.94 9.83 22.37 0.22 -0.72 16 19 C 0.14 1.65 6.62 38.67 0.26 1.91 16 20 N -0.60 -6.75 5.37 -304.57 -1.64 -8.38 16 21 H 0.44 2.27 8.78 -92.70 -0.81 1.45 16 22 C 0.51 9.91 8.00 87.18 0.70 10.61 16 23 O -0.51 -13.33 17.80 11.99 0.21 -13.12 16 24 C 0.51 10.63 8.01 87.18 0.70 11.32 16 25 O -0.51 -14.49 17.81 11.97 0.21 -14.27 16 26 N -0.61 -9.35 5.39 -304.66 -1.64 -10.99 16 27 H 0.43 5.21 8.79 -92.70 -0.81 4.40 16 28 C 0.11 1.70 6.61 38.44 0.25 1.95 16 29 C -0.09 -1.64 7.22 22.67 0.16 -1.47 16 30 H 0.04 1.32 6.52 -2.38 -0.02 1.30 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.11 2.36 4.80 -2.39 -0.01 2.35 16 34 H 0.05 1.39 6.52 -2.39 -0.02 1.38 16 35 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.66 6.93 -2.39 -0.02 1.64 16 37 H 0.03 1.51 6.17 -2.38 -0.01 1.50 16 38 H 0.00 -0.23 7.35 -2.39 -0.02 -0.24 16 39 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 40 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 41 H 0.19 0.30 8.06 -2.91 -0.02 0.27 16 42 H 0.15 2.89 5.10 -2.91 -0.01 2.87 16 Total: -1.00 -79.73 352.72 2.42 -77.32 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -0.51 Total: 7.15 kcal Atomic # 6 Polarization: 18.33 SS G_CDS: 5.46 Total: 23.79 kcal Atomic # 7 Polarization: -92.66 SS G_CDS: -4.92 Total: -97.58 kcal Atomic # 8 Polarization: -56.14 SS G_CDS: 0.36 Total: -55.78 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -79.73 2.42 -77.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523281326.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.180 kcal (2) G-P(sol) polarization free energy of solvation -79.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds