Wall clock time and date at job start Tue Mar 31 2020 16:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47215 * 2 1 4 4 H 1.09006 * 109.46927 * 304.99785 * 3 2 1 5 5 C 1.50702 * 109.47062 * 185.00420 * 3 2 1 6 6 H 1.08003 * 119.99530 * 239.99744 * 5 3 2 7 7 C 1.37872 * 120.00142 * 59.99614 * 5 3 2 8 8 N 1.31519 * 119.99602 * 179.97438 * 7 5 3 9 9 Si 1.86795 * 120.00228 * 0.02562 * 7 5 3 10 10 H 1.48507 * 109.46955 * 269.99837 * 9 7 5 11 11 H 1.48495 * 109.47410 * 29.99824 * 9 7 5 12 12 H 1.48503 * 109.47077 * 150.00253 * 9 7 5 13 13 N 1.46494 * 109.47331 * 64.99909 * 3 2 1 14 14 C 1.34781 * 120.00146 * 274.99821 * 13 3 2 15 15 O 1.21365 * 119.99761 * 0.02562 * 14 13 3 16 16 C 1.49331 * 120.00047 * 179.97438 * 14 13 3 17 17 O 1.21378 * 120.00190 * 0.02562 * 16 14 13 18 18 N 1.34777 * 120.00137 * 180.02562 * 16 14 13 19 19 C 1.39503 * 120.00381 * 174.47701 * 18 16 14 20 20 C 1.39027 * 119.94415 * 335.11405 * 19 18 16 21 21 C 1.37741 * 120.13348 * 179.72060 * 20 19 18 22 22 C 1.39770 * 120.02479 * 0.55372 * 21 20 19 23 23 C 1.43202 * 120.05531 * 179.69467 * 22 21 20 24 24 N 9.85395 * 110.93920 * 206.94829 * 13 1 2 25 25 C 1.39750 * 119.89172 * 359.72610 * 22 21 20 26 26 C 1.38148 * 119.86204 * 359.97438 * 25 22 21 27 27 O 1.35964 * 120.01194 * 180.02562 * 26 25 22 28 28 C 1.42902 * 116.99942 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.46829 * 300.00333 * 1 2 3 30 30 H 1.09002 * 109.46612 * 59.99976 * 1 2 3 31 31 H 1.08998 * 109.46974 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46829 * 239.99667 * 2 1 3 33 33 H 1.08993 * 109.47202 * 119.99983 * 2 1 3 34 34 H 0.97002 * 119.99552 * 179.97438 * 8 7 5 35 35 H 0.96993 * 120.00330 * 95.00122 * 13 3 2 36 36 H 0.97001 * 119.99899 * 354.47847 * 18 16 14 37 37 H 1.08002 * 119.92682 * 0.02562 * 20 19 18 38 38 H 1.07999 * 119.98908 * 180.25071 * 21 20 19 39 39 H 1.07998 * 120.07000 * 180.02562 * 25 22 21 40 40 H 1.08999 * 109.47118 * 299.99757 * 28 27 26 41 41 H 1.08998 * 109.47540 * 60.00005 * 28 27 26 42 42 H 1.09002 * 109.47094 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8889 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 5.4540 0.8804 -1.3363 9 14 3.0963 0.1100 -2.5707 10 1 2.8745 -1.3262 -2.2645 11 1 1.7881 0.8092 -2.6395 12 1 3.7942 0.2358 -3.8755 13 7 1.6525 2.0975 1.2517 14 6 0.4352 2.6645 1.3669 15 8 -0.3400 2.6320 0.4337 16 6 0.0400 3.3317 2.6431 17 8 0.8152 3.3638 3.5765 18 7 -1.1775 3.8982 2.7584 19 6 -1.5910 4.4194 3.9845 20 6 -1.0415 3.9340 5.1657 21 6 -1.4428 4.4498 6.3783 22 6 -2.4127 5.4551 6.4241 23 6 -2.8352 5.9872 7.6847 24 7 -3.1690 6.4124 8.6837 25 6 -2.9701 5.9398 5.2377 26 6 -2.5597 5.4235 4.0238 27 8 -3.0996 5.8932 2.8676 28 6 -4.0863 6.9204 2.9827 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.8771 0.4818 -2.1130 35 1 2.2720 2.1232 1.9977 36 1 -1.7662 3.9436 1.9888 37 1 -0.2949 3.1544 5.1322 38 1 -1.0114 4.0738 7.2942 39 1 -3.7194 6.7168 5.2697 40 1 -4.9273 6.5521 3.5702 41 1 -3.6508 7.7890 3.4766 42 1 -4.4339 7.2032 1.9891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527129777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:52 Heat of formation + Delta-G solvation = -35.428303 kcal Electronic energy + Delta-G solvation = -27493.417266 eV Core-core repulsion = 23440.050202 eV Total energy + Delta-G solvation = -4053.367064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.39480 -40.16729 -38.68882 -38.04453 -36.61217 -35.78144 -34.93465 -32.48160 -31.63645 -30.93458 -30.46366 -27.88533 -27.77734 -25.59449 -23.38831 -22.97560 -22.55290 -20.70763 -19.90459 -19.78975 -18.93397 -17.76975 -17.13687 -16.86551 -16.41801 -16.15257 -15.93740 -15.79647 -15.42718 -14.68403 -14.49496 -14.43376 -14.25844 -14.03985 -13.97296 -13.58372 -13.15895 -13.07866 -12.89235 -12.81026 -12.45521 -12.11971 -12.06393 -11.95183 -11.90819 -11.50606 -11.33950 -11.20981 -10.97350 -10.80328 -10.72442 -10.02998 -9.65876 -9.36175 -9.29076 -9.07749 -8.85925 -8.34716 -8.21692 -6.27709 -4.31945 0.24578 0.92711 1.56020 2.31030 2.35914 2.60267 2.76973 3.17416 3.30234 3.32461 3.37406 3.49919 3.55472 3.82359 4.23968 4.29821 4.56783 4.60499 4.75318 4.75643 4.87192 4.96568 5.04511 5.11554 5.32431 5.43201 5.63341 5.82759 5.85692 5.90657 5.96884 6.02775 6.30088 6.49300 6.56162 6.65355 6.74741 6.81136 6.89676 7.02198 7.12916 7.13703 7.33873 7.57894 7.95212 8.32976 8.44895 8.72687 9.30488 10.84063 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022455 B = 0.002557 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.640125 B =10948.840717 C =11535.833121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.141 4.141 3 C 0.241 3.759 4 H 0.055 0.945 5 C -0.540 4.540 6 H 0.084 0.916 7 C 0.081 3.919 8 N -0.887 5.887 9 Si 0.882 3.118 10 H -0.274 1.274 11 H -0.259 1.259 12 H -0.293 1.293 13 N -0.659 5.659 14 C 0.497 3.503 15 O -0.527 6.527 16 C 0.509 3.491 17 O -0.497 6.497 18 N -0.639 5.639 19 C 0.161 3.839 20 C -0.102 4.102 21 C -0.075 4.075 22 C -0.018 4.018 23 C 0.260 3.740 24 N -0.421 5.421 25 C -0.140 4.140 26 C 0.098 3.902 27 O -0.312 6.312 28 C 0.026 3.974 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.269 0.731 35 H 0.409 0.591 36 H 0.430 0.570 37 H 0.166 0.834 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.193 7.848 10.012 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.138 3.862 4 H 0.073 0.927 5 C -0.578 4.578 6 H 0.102 0.898 7 C -0.124 4.124 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.184 1.184 12 H -0.220 1.220 13 N -0.308 5.308 14 C 0.276 3.724 15 O -0.405 6.405 16 C 0.292 3.708 17 O -0.371 6.371 18 N -0.284 5.284 19 C 0.063 3.937 20 C -0.122 4.122 21 C -0.097 4.097 22 C -0.023 4.023 23 C -0.055 4.055 24 N -0.096 5.096 25 C -0.162 4.162 26 C 0.051 3.949 27 O -0.225 6.225 28 C -0.068 4.068 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.244 0.756 36 H 0.269 0.731 37 H 0.183 0.817 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.423 8.335 11.144 23.088 hybrid contribution -0.427 -0.359 -1.005 1.149 sum -18.850 7.976 10.140 22.842 Atomic orbital electron populations 1.21895 0.96873 0.99463 1.02062 1.22319 0.94399 0.99546 1.01676 1.19372 0.96249 0.88720 0.81837 0.92714 1.20996 0.88173 1.40381 1.08205 0.89839 1.24821 0.94902 0.95048 0.97604 1.69863 1.08681 1.44016 1.29806 0.86917 0.80921 0.80009 0.80987 1.20110 1.18401 1.22027 1.46102 1.13513 1.52442 1.18722 1.19542 0.84383 0.81417 0.87104 1.90762 1.51145 1.59342 1.39271 1.20913 0.81213 0.78868 0.89768 1.90714 1.50331 1.55899 1.40107 1.43075 1.17458 1.56140 1.11742 1.17377 0.95960 0.93768 0.86550 1.21312 1.00988 1.00908 0.89040 1.21017 0.95162 0.94865 0.98640 1.15709 1.00515 0.99924 0.86110 1.25624 0.93558 0.93484 0.92844 1.81263 1.08672 1.08755 1.10937 1.20939 1.02745 1.02564 0.89933 1.18389 0.96413 0.94353 0.85789 1.86090 1.54925 1.53973 1.27521 1.23138 0.89977 0.89195 1.04525 0.93269 0.92637 0.94560 0.92304 0.91871 0.92126 0.75571 0.73088 0.81690 0.84176 0.84051 0.92360 0.92327 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.51 37.16 0.32 -2.32 16 2 C -0.14 -2.90 5.11 -26.73 -0.14 -3.04 16 3 C 0.24 5.33 1.83 -69.08 -0.13 5.20 16 4 H 0.06 1.31 6.63 -51.93 -0.34 0.97 16 5 C -0.54 -13.94 9.31 -34.44 -0.32 -14.27 16 6 H 0.08 2.30 7.98 -52.48 -0.42 1.88 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -25.50 13.96 55.43 0.77 -24.72 16 9 Si 0.88 20.62 24.41 -169.99 -4.15 16.47 16 10 H -0.27 -6.21 6.83 56.52 0.39 -5.83 16 11 H -0.26 -5.91 6.53 56.52 0.37 -5.54 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.66 -12.36 5.01 -55.40 -0.28 -12.64 16 14 C 0.50 8.47 6.45 -11.64 -0.08 8.39 16 15 O -0.53 -9.75 13.62 5.48 0.07 -9.68 16 16 C 0.51 7.29 7.68 -11.64 -0.09 7.20 16 17 O -0.50 -7.53 13.62 5.47 0.07 -7.46 16 18 N -0.64 -7.54 5.25 -10.18 -0.05 -7.59 16 19 C 0.16 1.70 6.44 -83.58 -0.54 1.16 16 20 C -0.10 -1.01 8.69 -39.47 -0.34 -1.35 16 21 C -0.08 -0.61 9.74 -39.19 -0.38 -0.99 16 22 C -0.02 -0.15 5.74 -106.83 -0.61 -0.76 16 23 C 0.26 2.46 15.32 -22.48 -0.34 2.12 16 24 N -0.42 -4.91 18.54 41.83 0.78 -4.13 16 25 C -0.14 -1.04 8.74 -39.05 -0.34 -1.38 16 26 C 0.10 0.88 6.70 -39.12 -0.26 0.61 16 27 O -0.31 -2.62 9.89 -19.63 -0.19 -2.82 16 28 C 0.03 0.12 9.81 101.05 0.99 1.12 16 29 H 0.05 0.86 5.64 -51.93 -0.29 0.56 16 30 H 0.05 1.05 7.85 -51.93 -0.41 0.64 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 1.28 3.22 -51.93 -0.17 1.11 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.41 7.26 8.01 -40.82 -0.33 6.93 16 36 H 0.43 4.77 7.80 -40.82 -0.32 4.45 16 37 H 0.17 1.79 5.77 -52.49 -0.30 1.48 16 38 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.14 0.74 6.28 -52.49 -0.33 0.41 16 40 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 41 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 42 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 355.59 15.07 5.36 5.36 Total: -1.00 -30.41 355.59 -4.56 -34.97 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -4.58 Total: 8.49 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -2.36 Total: 3.75 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 1.22 Total: -49.09 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.04 Total: -19.95 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.15 Total: 16.47 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.41 -4.56 -34.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527129777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.462 kcal (2) G-P(sol) polarization free energy of solvation -30.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds