Wall clock time and date at job start Tue Mar 31 2020 16:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47215 * 2 1 4 4 H 1.09006 * 109.46927 * 304.99785 * 3 2 1 5 5 C 1.50702 * 109.47062 * 185.00420 * 3 2 1 6 6 H 1.08003 * 119.99530 * 239.99744 * 5 3 2 7 7 C 1.37872 * 120.00142 * 59.99614 * 5 3 2 8 8 N 1.31519 * 119.99602 * 179.97438 * 7 5 3 9 9 Si 1.86795 * 120.00228 * 0.02562 * 7 5 3 10 10 H 1.48507 * 109.46955 * 269.99837 * 9 7 5 11 11 H 1.48495 * 109.47410 * 29.99824 * 9 7 5 12 12 H 1.48503 * 109.47077 * 150.00253 * 9 7 5 13 13 N 1.46494 * 109.47331 * 64.99909 * 3 2 1 14 14 C 1.34781 * 120.00146 * 274.99821 * 13 3 2 15 15 O 1.21365 * 119.99761 * 0.02562 * 14 13 3 16 16 C 1.49331 * 120.00047 * 179.97438 * 14 13 3 17 17 O 1.21378 * 120.00190 * 0.02562 * 16 14 13 18 18 N 1.34777 * 120.00137 * 180.02562 * 16 14 13 19 19 C 1.39503 * 120.00381 * 174.47701 * 18 16 14 20 20 C 1.39027 * 119.94415 * 335.11405 * 19 18 16 21 21 C 1.37741 * 120.13348 * 179.72060 * 20 19 18 22 22 C 1.39770 * 120.02479 * 0.55372 * 21 20 19 23 23 C 1.43202 * 120.05531 * 179.69467 * 22 21 20 24 24 N 9.85395 * 110.93920 * 206.94829 * 13 1 2 25 25 C 1.39750 * 119.89172 * 359.72610 * 22 21 20 26 26 C 1.38148 * 119.86204 * 359.97438 * 25 22 21 27 27 O 1.35964 * 120.01194 * 180.02562 * 26 25 22 28 28 C 1.42902 * 116.99942 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.46829 * 300.00333 * 1 2 3 30 30 H 1.09002 * 109.46612 * 59.99976 * 1 2 3 31 31 H 1.08998 * 109.46974 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46829 * 239.99667 * 2 1 3 33 33 H 1.08993 * 109.47202 * 119.99983 * 2 1 3 34 34 H 0.97002 * 119.99552 * 179.97438 * 8 7 5 35 35 H 0.96993 * 120.00330 * 95.00122 * 13 3 2 36 36 H 0.97001 * 119.99899 * 354.47847 * 18 16 14 37 37 H 1.08002 * 119.92682 * 0.02562 * 20 19 18 38 38 H 1.07999 * 119.98908 * 180.25071 * 21 20 19 39 39 H 1.07998 * 120.07000 * 180.02562 * 25 22 21 40 40 H 1.08999 * 109.47118 * 299.99757 * 28 27 26 41 41 H 1.08998 * 109.47540 * 60.00005 * 28 27 26 42 42 H 1.09002 * 109.47094 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1239 6 1 4.1473 1.8889 0.6522 7 6 4.1433 0.8783 -1.2280 8 7 5.4540 0.8804 -1.3363 9 14 3.0963 0.1100 -2.5707 10 1 2.8745 -1.3262 -2.2645 11 1 1.7881 0.8092 -2.6395 12 1 3.7942 0.2358 -3.8755 13 7 1.6525 2.0975 1.2517 14 6 0.4352 2.6645 1.3669 15 8 -0.3400 2.6320 0.4337 16 6 0.0400 3.3317 2.6431 17 8 0.8152 3.3638 3.5765 18 7 -1.1775 3.8982 2.7584 19 6 -1.5910 4.4194 3.9845 20 6 -1.0415 3.9340 5.1657 21 6 -1.4428 4.4498 6.3783 22 6 -2.4127 5.4551 6.4241 23 6 -2.8352 5.9872 7.6847 24 7 -3.1690 6.4124 8.6837 25 6 -2.9701 5.9398 5.2377 26 6 -2.5597 5.4235 4.0238 27 8 -3.0996 5.8932 2.8676 28 6 -4.0863 6.9204 2.9827 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.8771 0.4818 -2.1130 35 1 2.2720 2.1232 1.9977 36 1 -1.7662 3.9436 1.9888 37 1 -0.2949 3.1544 5.1322 38 1 -1.0114 4.0738 7.2942 39 1 -3.7194 6.7168 5.2697 40 1 -4.9273 6.5521 3.5702 41 1 -3.6508 7.7890 3.4766 42 1 -4.4339 7.2032 1.9891 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527129777.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:51 Heat of formation + Delta-G solvation = -57.307372 kcal Electronic energy + Delta-G solvation = -27494.366014 eV Core-core repulsion = 23440.050202 eV Total energy + Delta-G solvation = -4054.315811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.34884 -41.16879 -39.87751 -38.77279 -37.49873 -37.27864 -35.97051 -34.39174 -33.22164 -31.67333 -31.18231 -29.58978 -28.26926 -26.76929 -24.76439 -23.93003 -23.66260 -22.09061 -21.28408 -20.57165 -20.14368 -18.85470 -18.47399 -17.72330 -17.55045 -17.36512 -17.15416 -16.69258 -16.58844 -16.02028 -15.70487 -15.28582 -15.15329 -15.01581 -14.95567 -14.83101 -14.66937 -14.09379 -13.88190 -13.76526 -13.66236 -13.60148 -13.49458 -12.96567 -12.92055 -12.74528 -12.49046 -12.39626 -12.24976 -12.03546 -11.83328 -11.67694 -11.34534 -11.25973 -10.86112 -10.59912 -9.95412 -9.78946 -8.98828 -8.35900 -6.43490 -0.53846 0.26660 0.40302 1.23319 1.31834 1.39650 1.48706 1.55968 1.79743 2.18285 2.20275 2.28466 2.62576 2.78517 2.78827 2.99498 3.41952 3.67974 3.98537 4.04489 4.16550 4.24549 4.33566 4.40412 4.44533 4.47732 4.62426 4.72886 4.80239 4.86063 4.93400 5.03213 5.11478 5.15063 5.19682 5.21650 5.31684 5.49694 5.53233 5.56907 5.84396 6.11384 6.24429 6.39025 6.50279 6.58433 6.72912 7.00677 7.24518 8.79280 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022455 B = 0.002557 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.640125 B =10948.840717 C =11535.833121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.248 3.752 4 H 0.039 0.961 5 C -0.539 4.539 6 H 0.053 0.947 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.939 3.061 10 H -0.259 1.259 11 H -0.250 1.250 12 H -0.295 1.295 13 N -0.666 5.666 14 C 0.500 3.500 15 O -0.539 6.539 16 C 0.518 3.482 17 O -0.509 6.509 18 N -0.625 5.625 19 C 0.136 3.864 20 C -0.108 4.108 21 C -0.070 4.070 22 C -0.013 4.013 23 C 0.284 3.716 24 N -0.458 5.458 25 C -0.128 4.128 26 C 0.103 3.897 27 O -0.328 6.328 28 C 0.015 3.985 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.270 0.730 35 H 0.412 0.588 36 H 0.433 0.567 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.168 0.832 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.942 8.182 10.508 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.144 3.856 4 H 0.056 0.944 5 C -0.577 4.577 6 H 0.071 0.929 7 C -0.171 4.171 8 N -0.572 5.572 9 Si 0.765 3.235 10 H -0.185 1.185 11 H -0.174 1.174 12 H -0.223 1.223 13 N -0.316 5.316 14 C 0.280 3.720 15 O -0.418 6.418 16 C 0.300 3.700 17 O -0.384 6.384 18 N -0.271 5.271 19 C 0.040 3.960 20 C -0.128 4.128 21 C -0.091 4.091 22 C -0.017 4.017 23 C -0.031 4.031 24 N -0.134 5.134 25 C -0.150 4.150 26 C 0.056 3.944 27 O -0.241 6.241 28 C -0.079 4.079 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.248 0.752 36 H 0.273 0.727 37 H 0.172 0.828 38 H 0.176 0.824 39 H 0.185 0.815 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -21.228 8.695 11.672 25.738 hybrid contribution 0.365 -0.328 -1.076 1.183 sum -20.863 8.366 10.596 24.850 Atomic orbital electron populations 1.21802 0.94700 1.01101 1.01823 1.22240 0.96289 0.97871 1.01470 1.19026 0.93577 0.90094 0.82853 0.94350 1.21241 0.90228 1.39068 1.07143 0.92854 1.25599 0.95820 0.95757 0.99955 1.69991 1.10510 1.45855 1.30879 0.86002 0.79547 0.80015 0.77924 1.18457 1.17411 1.22299 1.45910 1.14602 1.53249 1.17808 1.19910 0.83405 0.80632 0.88027 1.90748 1.51340 1.59535 1.40159 1.20201 0.82084 0.79372 0.88320 1.90725 1.50905 1.56781 1.39940 1.42884 1.16351 1.55256 1.12580 1.17579 0.97405 0.95165 0.85892 1.21241 1.01011 1.00988 0.89566 1.21142 0.94808 0.94439 0.98698 1.15719 1.00429 0.99770 0.85808 1.25630 0.92482 0.92462 0.92492 1.81301 1.09986 1.10059 1.12031 1.21159 1.02505 1.02406 0.88910 1.18365 0.95781 0.93767 0.86527 1.86084 1.55731 1.54895 1.27431 1.23450 0.89745 0.88720 1.05958 0.92868 0.93489 0.91984 0.93265 0.91297 0.92029 0.75173 0.72703 0.82810 0.82413 0.81472 0.90770 0.91246 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 8.51 71.98 0.61 -4.05 16 2 C -0.14 -5.59 5.11 30.60 0.16 -5.44 16 3 C 0.25 10.98 1.83 44.25 0.08 11.07 16 4 H 0.04 1.84 6.63 -2.38 -0.02 1.82 16 5 C -0.54 -28.51 9.31 25.60 0.24 -28.27 16 6 H 0.05 3.07 7.98 -2.91 -0.02 3.05 16 7 C 0.03 1.57 5.45 84.65 0.46 2.03 16 8 N -0.93 -55.10 13.96 21.45 0.30 -54.80 16 9 Si 0.94 42.50 24.41 68.60 1.67 44.17 16 10 H -0.26 -11.01 6.83 99.48 0.68 -10.33 16 11 H -0.25 -10.85 6.53 99.48 0.65 -10.20 16 12 H -0.30 -13.39 7.11 99.48 0.71 -12.69 16 13 N -0.67 -25.08 5.01 -447.55 -2.24 -27.32 16 14 C 0.50 16.80 6.45 87.23 0.56 17.37 16 15 O -0.54 -19.47 13.62 -3.29 -0.04 -19.52 16 16 C 0.52 14.51 7.68 87.23 0.67 15.18 16 17 O -0.51 -15.24 13.62 -3.34 -0.05 -15.29 16 18 N -0.63 -14.09 5.25 -304.46 -1.60 -15.69 16 19 C 0.14 2.66 6.44 38.43 0.25 2.91 16 20 C -0.11 -1.99 8.69 22.34 0.19 -1.80 16 21 C -0.07 -0.99 9.74 22.52 0.22 -0.77 16 22 C -0.01 -0.18 5.74 -21.30 -0.12 -0.30 16 23 C 0.28 4.73 15.32 88.33 1.35 6.08 16 24 N -0.46 -9.92 18.54 19.00 0.35 -9.57 16 25 C -0.13 -1.52 8.74 22.61 0.20 -1.32 16 26 C 0.10 1.60 6.70 22.57 0.15 1.75 16 27 O -0.33 -4.75 9.89 -93.15 -0.92 -5.67 16 28 C 0.02 0.10 9.81 113.37 1.11 1.21 16 29 H 0.05 1.75 5.64 -2.39 -0.01 1.74 16 30 H 0.05 1.67 7.85 -2.39 -0.02 1.65 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.05 2.06 3.22 -2.39 -0.01 2.05 16 33 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 35 H 0.41 14.92 8.01 -92.71 -0.74 14.18 16 36 H 0.43 9.09 7.80 -92.71 -0.72 8.37 16 37 H 0.15 3.23 5.77 -2.91 -0.02 3.22 16 38 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 39 H 0.17 1.09 6.28 -2.91 -0.02 1.07 16 40 H 0.07 0.25 7.66 -2.39 -0.02 0.23 16 41 H 0.07 0.31 7.66 -2.39 -0.02 0.29 16 42 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -66.14 355.59 3.18 -62.96 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -0.43 Total: 25.08 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 6.14 Total: 15.64 kcal Atomic # 7 Polarization: -104.19 SS G_CDS: -3.19 Total: -107.39 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -1.01 Total: -40.47 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.67 Total: 44.17 kcal Total: -66.14 3.18 -62.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527129777.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.655 kcal (2) G-P(sol) polarization free energy of solvation -66.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds