Wall clock time and date at job start Tue Mar 31 2020 16:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46738 * 2 1 4 4 H 1.09001 * 109.47013 * 55.00113 * 3 2 1 5 5 C 1.50700 * 109.47064 * 175.00211 * 3 2 1 6 6 H 1.08004 * 120.00068 * 120.00069 * 5 3 2 7 7 C 1.37876 * 120.00017 * 300.00147 * 5 3 2 8 8 N 1.31515 * 119.99913 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99905 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47286 * 90.00320 * 9 7 5 11 11 H 1.48503 * 109.46916 * 210.00266 * 9 7 5 12 12 H 1.48496 * 109.47161 * 329.99790 * 9 7 5 13 13 N 1.46502 * 109.47042 * 295.00060 * 3 2 1 14 14 C 1.34780 * 119.99701 * 85.00557 * 13 3 2 15 15 O 1.21356 * 120.00079 * 359.97438 * 14 13 3 16 16 C 1.49340 * 119.99446 * 180.02562 * 14 13 3 17 17 O 1.21378 * 120.00556 * 359.97438 * 16 14 13 18 18 N 1.34780 * 119.99446 * 179.97438 * 16 14 13 19 19 C 1.39505 * 119.99513 * 184.52289 * 18 16 14 20 20 C 1.39020 * 119.94509 * 325.20308 * 19 18 16 21 21 C 1.37748 * 120.13585 * 180.27496 * 20 19 18 22 22 C 1.39775 * 120.02360 * 0.02562 * 21 20 19 23 23 C 1.43192 * 120.05403 * 179.97438 * 22 21 20 24 24 N 9.85857 * 111.48997 * 153.61726 * 13 1 2 25 25 C 1.39749 * 119.88791 * 359.97438 * 22 21 20 26 26 C 1.38154 * 119.86623 * 0.02562 * 25 22 21 27 27 O 1.35964 * 120.00886 * 180.02562 * 26 25 22 28 28 C 1.42897 * 117.00320 * 359.97345 * 27 26 25 29 29 H 1.08999 * 109.47361 * 299.99425 * 1 2 3 30 30 H 1.08995 * 109.47465 * 60.00105 * 1 2 3 31 31 H 1.09001 * 109.46625 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47087 * 240.00215 * 2 1 3 33 33 H 1.08995 * 109.47465 * 119.99895 * 2 1 3 34 34 H 0.97003 * 119.99993 * 179.97438 * 8 7 5 35 35 H 0.96995 * 119.99902 * 264.99808 * 13 3 2 36 36 H 0.96996 * 120.00112 * 4.51657 * 18 16 14 37 37 H 1.08003 * 119.93409 * 0.26569 * 20 19 18 38 38 H 1.07996 * 119.98727 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.06395 * 180.02562 * 25 22 21 40 40 H 1.08996 * 109.47415 * 300.00430 * 28 27 26 41 41 H 1.08999 * 109.47175 * 60.00053 * 28 27 26 42 42 H 1.08998 * 109.47358 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8891 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 5.4540 0.8797 1.3356 9 14 3.0964 0.1101 2.5706 10 1 2.8746 -1.3260 2.2646 11 1 3.7942 0.2361 3.8754 12 1 1.7882 0.8094 2.6395 13 7 1.6523 2.0975 -1.2518 14 6 0.4349 2.6644 -1.3669 15 8 -0.3402 2.6319 -0.4337 16 6 0.0396 3.3315 -2.6432 17 8 0.8147 3.3636 -3.5767 18 7 -1.1779 3.8980 -2.7584 19 6 -1.5833 4.4377 -3.9792 20 6 -0.6534 5.0548 -4.8081 21 6 -1.0504 5.5941 -6.0119 22 6 -2.3906 5.5222 -6.4024 23 6 -2.8041 6.0830 -7.6533 24 7 -3.1310 6.5309 -8.6448 25 6 -3.3262 4.9020 -5.5699 26 6 -2.9230 4.3627 -4.3636 27 8 -3.8307 3.7583 -3.5516 28 6 -5.1840 3.7174 -4.0086 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.8771 0.4819 2.1126 35 1 2.2718 2.1232 -1.9977 36 1 -1.7722 3.9303 -1.9925 37 1 0.3824 5.1118 -4.5076 38 1 -0.3261 6.0733 -6.6538 39 1 -4.3624 4.8445 -5.8690 40 1 -5.5502 4.7340 -4.1515 41 1 -5.2320 3.1777 -4.9544 42 1 -5.8023 3.2096 -3.2683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527129778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:55 Heat of formation + Delta-G solvation = -36.795779 kcal Electronic energy + Delta-G solvation = -27526.327947 eV Core-core repulsion = 23472.901585 eV Total energy + Delta-G solvation = -4053.426362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.35193 -40.15270 -38.65523 -38.05585 -36.62339 -35.76322 -34.91056 -32.47219 -31.62130 -30.94335 -30.45670 -27.87989 -27.77124 -25.57929 -23.37606 -22.93743 -22.54167 -20.71076 -19.89741 -19.78184 -18.92765 -17.74547 -17.13971 -16.84557 -16.46274 -16.15404 -15.93288 -15.69875 -15.44490 -14.67783 -14.61652 -14.36248 -14.26073 -13.99196 -13.95705 -13.56335 -13.19129 -13.05830 -12.84558 -12.82200 -12.44042 -12.11443 -12.05244 -11.94693 -11.90179 -11.49489 -11.36628 -11.20012 -10.96485 -10.72769 -10.66924 -10.02216 -9.64953 -9.35359 -9.27194 -9.11274 -8.85264 -8.33966 -8.27737 -6.27308 -4.31456 0.23635 0.92060 1.57936 2.29585 2.37660 2.59189 2.77709 3.17948 3.30568 3.32922 3.38781 3.47752 3.53922 3.85024 4.24425 4.30893 4.55926 4.60639 4.75151 4.76417 4.87090 4.97610 5.04983 5.11390 5.31757 5.42019 5.66091 5.84071 5.84531 5.91820 5.98249 6.04116 6.29122 6.50597 6.57325 6.66739 6.75809 6.81901 6.90748 7.03536 7.11910 7.14085 7.34606 7.61411 7.97032 8.33824 8.46575 8.73141 9.30989 10.84453 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022796 B = 0.002617 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.965500 B =10698.469536 C =11655.787965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.241 3.759 4 H 0.055 0.945 5 C -0.539 4.539 6 H 0.084 0.916 7 C 0.081 3.919 8 N -0.888 5.888 9 Si 0.882 3.118 10 H -0.274 1.274 11 H -0.293 1.293 12 H -0.259 1.259 13 N -0.659 5.659 14 C 0.497 3.503 15 O -0.527 6.527 16 C 0.510 3.490 17 O -0.500 6.500 18 N -0.641 5.641 19 C 0.154 3.846 20 C -0.090 4.090 21 C -0.080 4.080 22 C -0.012 4.012 23 C 0.259 3.741 24 N -0.419 5.419 25 C -0.144 4.144 26 C 0.104 3.896 27 O -0.309 6.309 28 C 0.026 3.974 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.035 0.965 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.269 0.731 35 H 0.409 0.591 36 H 0.429 0.571 37 H 0.161 0.839 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.754 6.545 -10.560 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.138 3.862 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.102 0.898 7 C -0.124 4.124 8 N -0.524 5.524 9 Si 0.712 3.288 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.184 1.184 13 N -0.308 5.308 14 C 0.276 3.724 15 O -0.405 6.405 16 C 0.293 3.707 17 O -0.373 6.373 18 N -0.288 5.288 19 C 0.058 3.942 20 C -0.110 4.110 21 C -0.101 4.101 22 C -0.017 4.017 23 C -0.056 4.056 24 N -0.095 5.095 25 C -0.166 4.166 26 C 0.057 3.943 27 O -0.222 6.222 28 C -0.069 4.069 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.244 0.756 36 H 0.268 0.732 37 H 0.179 0.821 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.994 7.018 -11.709 23.391 hybrid contribution -0.521 -0.658 0.907 1.235 sum -19.515 6.360 -10.803 23.194 Atomic orbital electron populations 1.21892 0.96860 0.99452 1.02075 1.22320 0.94412 0.99570 1.01646 1.19369 0.96228 0.88716 0.81852 0.92712 1.20998 0.88181 1.40366 1.08186 0.89841 1.24821 0.94897 0.95038 0.97614 1.69860 1.08675 1.44065 1.29787 0.86918 0.80926 0.80020 0.80978 1.20124 1.22033 1.18397 1.46103 1.13560 1.52478 1.18699 1.19546 0.84320 0.81442 0.87086 1.90757 1.51126 1.59312 1.39345 1.20906 0.81602 0.78612 0.89573 1.90740 1.50156 1.56499 1.39934 1.43022 1.17967 1.55939 1.11908 1.17318 0.90102 0.98199 0.88631 1.21215 1.00919 0.95304 0.93570 1.21021 0.93657 0.99000 0.96461 1.15721 0.94017 1.02782 0.89136 1.25622 0.93641 0.93502 0.92818 1.81268 1.07751 1.09271 1.11179 1.20958 1.00220 1.01786 0.93647 1.18505 0.88777 0.96693 0.90343 1.86120 1.18317 1.73507 1.44305 1.23143 0.79917 1.02165 1.01690 0.92646 0.93237 0.94592 0.91898 0.92320 0.92131 0.75584 0.73209 0.82127 0.84150 0.84043 0.92350 0.92342 0.87715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.51 37.16 0.32 -2.36 16 2 C -0.14 -2.93 5.11 -26.73 -0.14 -3.07 16 3 C 0.24 5.35 1.83 -69.08 -0.13 5.23 16 4 H 0.06 1.31 6.63 -51.93 -0.34 0.97 16 5 C -0.54 -13.96 9.31 -34.44 -0.32 -14.28 16 6 H 0.08 2.30 7.98 -52.48 -0.42 1.88 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -25.52 13.96 55.43 0.77 -24.74 16 9 Si 0.88 20.67 24.41 -169.99 -4.15 16.52 16 10 H -0.27 -6.24 6.83 56.52 0.39 -5.86 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.26 -5.92 6.53 56.52 0.37 -5.55 16 13 N -0.66 -12.47 5.01 -55.40 -0.28 -12.75 16 14 C 0.50 8.54 6.45 -11.64 -0.08 8.47 16 15 O -0.53 -9.81 13.62 5.49 0.07 -9.73 16 16 C 0.51 7.37 7.73 -11.64 -0.09 7.28 16 17 O -0.50 -7.68 13.87 5.47 0.08 -7.60 16 18 N -0.64 -7.57 5.16 -10.18 -0.05 -7.62 16 19 C 0.15 1.62 6.32 -83.58 -0.53 1.09 16 20 C -0.09 -0.88 8.67 -39.47 -0.34 -1.22 16 21 C -0.08 -0.64 9.74 -39.19 -0.38 -1.02 16 22 C -0.01 -0.10 5.74 -106.83 -0.61 -0.71 16 23 C 0.26 2.43 15.32 -22.48 -0.34 2.08 16 24 N -0.42 -4.85 18.54 41.84 0.78 -4.08 16 25 C -0.14 -1.06 8.74 -39.05 -0.34 -1.40 16 26 C 0.10 0.93 6.70 -39.11 -0.26 0.67 16 27 O -0.31 -2.63 10.03 -19.63 -0.20 -2.82 16 28 C 0.03 0.12 9.81 101.05 0.99 1.11 16 29 H 0.05 1.06 7.85 -51.93 -0.41 0.65 16 30 H 0.05 0.89 5.64 -51.93 -0.29 0.59 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.29 3.22 -51.93 -0.17 1.12 16 34 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.41 7.34 8.01 -40.82 -0.33 7.01 16 36 H 0.43 4.72 8.02 -40.82 -0.33 4.39 16 37 H 0.16 1.72 6.17 -52.48 -0.32 1.39 16 38 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.14 0.73 6.28 -52.49 -0.33 0.40 16 40 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 41 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 42 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 356.41 15.07 5.37 5.37 Total: -1.00 -30.54 356.41 -4.57 -35.10 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -4.61 Total: 8.43 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -2.35 Total: 3.93 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 1.22 Total: -49.19 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.05 Total: -20.16 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.15 Total: 16.52 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.54 -4.57 -35.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527129778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.695 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds