Wall clock time and date at job start Tue Mar 31 2020 16:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46738 * 2 1 4 4 H 1.09001 * 109.47013 * 55.00113 * 3 2 1 5 5 C 1.50700 * 109.47064 * 175.00211 * 3 2 1 6 6 H 1.08004 * 120.00068 * 120.00069 * 5 3 2 7 7 C 1.37876 * 120.00017 * 300.00147 * 5 3 2 8 8 N 1.31515 * 119.99913 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99905 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47286 * 90.00320 * 9 7 5 11 11 H 1.48503 * 109.46916 * 210.00266 * 9 7 5 12 12 H 1.48496 * 109.47161 * 329.99790 * 9 7 5 13 13 N 1.46502 * 109.47042 * 295.00060 * 3 2 1 14 14 C 1.34780 * 119.99701 * 85.00557 * 13 3 2 15 15 O 1.21356 * 120.00079 * 359.97438 * 14 13 3 16 16 C 1.49340 * 119.99446 * 180.02562 * 14 13 3 17 17 O 1.21378 * 120.00556 * 359.97438 * 16 14 13 18 18 N 1.34780 * 119.99446 * 179.97438 * 16 14 13 19 19 C 1.39505 * 119.99513 * 184.52289 * 18 16 14 20 20 C 1.39020 * 119.94509 * 325.20308 * 19 18 16 21 21 C 1.37748 * 120.13585 * 180.27496 * 20 19 18 22 22 C 1.39775 * 120.02360 * 0.02562 * 21 20 19 23 23 C 1.43192 * 120.05403 * 179.97438 * 22 21 20 24 24 N 9.85857 * 111.48997 * 153.61726 * 13 1 2 25 25 C 1.39749 * 119.88791 * 359.97438 * 22 21 20 26 26 C 1.38154 * 119.86623 * 0.02562 * 25 22 21 27 27 O 1.35964 * 120.00886 * 180.02562 * 26 25 22 28 28 C 1.42897 * 117.00320 * 359.97345 * 27 26 25 29 29 H 1.08999 * 109.47361 * 299.99425 * 1 2 3 30 30 H 1.08995 * 109.47465 * 60.00105 * 1 2 3 31 31 H 1.09001 * 109.46625 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47087 * 240.00215 * 2 1 3 33 33 H 1.08995 * 109.47465 * 119.99895 * 2 1 3 34 34 H 0.97003 * 119.99993 * 179.97438 * 8 7 5 35 35 H 0.96995 * 119.99902 * 264.99808 * 13 3 2 36 36 H 0.96996 * 120.00112 * 4.51657 * 18 16 14 37 37 H 1.08003 * 119.93409 * 0.26569 * 20 19 18 38 38 H 1.07996 * 119.98727 * 179.97438 * 21 20 19 39 39 H 1.07999 * 120.06395 * 180.02562 * 25 22 21 40 40 H 1.08996 * 109.47415 * 300.00430 * 28 27 26 41 41 H 1.08999 * 109.47175 * 60.00053 * 28 27 26 42 42 H 1.08998 * 109.47358 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8891 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 5.4540 0.8797 1.3356 9 14 3.0964 0.1101 2.5706 10 1 2.8746 -1.3260 2.2646 11 1 3.7942 0.2361 3.8754 12 1 1.7882 0.8094 2.6395 13 7 1.6523 2.0975 -1.2518 14 6 0.4349 2.6644 -1.3669 15 8 -0.3402 2.6319 -0.4337 16 6 0.0396 3.3315 -2.6432 17 8 0.8147 3.3636 -3.5767 18 7 -1.1779 3.8980 -2.7584 19 6 -1.5833 4.4377 -3.9792 20 6 -0.6534 5.0548 -4.8081 21 6 -1.0504 5.5941 -6.0119 22 6 -2.3906 5.5222 -6.4024 23 6 -2.8041 6.0830 -7.6533 24 7 -3.1310 6.5309 -8.6448 25 6 -3.3262 4.9020 -5.5699 26 6 -2.9230 4.3627 -4.3636 27 8 -3.8307 3.7583 -3.5516 28 6 -5.1840 3.7174 -4.0086 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.8771 0.4819 2.1126 35 1 2.2718 2.1232 -1.9977 36 1 -1.7722 3.9303 -1.9925 37 1 0.3824 5.1118 -4.5076 38 1 -0.3261 6.0733 -6.6538 39 1 -4.3624 4.8445 -5.8690 40 1 -5.5502 4.7340 -4.1515 41 1 -5.2320 3.1777 -4.9544 42 1 -5.8023 3.2096 -3.2683 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527129778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:54 Heat of formation + Delta-G solvation = -58.775521 kcal Electronic energy + Delta-G solvation = -27527.281060 eV Core-core repulsion = 23472.901585 eV Total energy + Delta-G solvation = -4054.379475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.30279 -41.16782 -39.84715 -38.78363 -37.50147 -37.27803 -35.94779 -34.38835 -33.21979 -31.67532 -31.17551 -29.58934 -28.26568 -26.75848 -24.75998 -23.92578 -23.61501 -22.10014 -21.28492 -20.55984 -20.15645 -18.83572 -18.46579 -17.75972 -17.49005 -17.37338 -17.10896 -16.75544 -16.61090 -16.01651 -15.65690 -15.30076 -15.08567 -15.02512 -14.99050 -14.82434 -14.67282 -14.10516 -13.89532 -13.74901 -13.66555 -13.54817 -13.46921 -12.96971 -12.91409 -12.74945 -12.52085 -12.39775 -12.27686 -12.01758 -11.83428 -11.55409 -11.34682 -11.26008 -10.86064 -10.61140 -9.95241 -9.81106 -9.04594 -8.35783 -6.43310 -0.53070 0.26521 0.39354 1.25869 1.31907 1.39628 1.48719 1.55068 1.79969 2.17640 2.21852 2.28529 2.63541 2.77131 2.77574 2.99567 3.44072 3.69321 3.98682 4.03797 4.17688 4.24028 4.33067 4.40532 4.44161 4.47591 4.63358 4.72138 4.80010 4.85993 4.95899 5.02564 5.10928 5.15416 5.19404 5.21512 5.31717 5.49670 5.52666 5.55762 5.84401 6.11720 6.25144 6.38062 6.51602 6.59063 6.74559 7.01449 7.24714 8.79367 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022796 B = 0.002617 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.965500 B =10698.469536 C =11655.787965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.141 4.141 3 C 0.249 3.751 4 H 0.040 0.960 5 C -0.539 4.539 6 H 0.054 0.946 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.938 3.062 10 H -0.260 1.260 11 H -0.295 1.295 12 H -0.250 1.250 13 N -0.667 5.667 14 C 0.501 3.499 15 O -0.539 6.539 16 C 0.518 3.482 17 O -0.512 6.512 18 N -0.627 5.627 19 C 0.130 3.870 20 C -0.096 4.096 21 C -0.074 4.074 22 C -0.007 4.007 23 C 0.283 3.717 24 N -0.456 5.456 25 C -0.132 4.132 26 C 0.109 3.891 27 O -0.326 6.326 28 C 0.014 3.986 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.271 0.729 35 H 0.412 0.588 36 H 0.432 0.568 37 H 0.149 0.851 38 H 0.158 0.842 39 H 0.168 0.832 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.701 6.349 -11.203 25.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.145 3.855 4 H 0.057 0.943 5 C -0.577 4.577 6 H 0.072 0.928 7 C -0.171 4.171 8 N -0.572 5.572 9 Si 0.765 3.235 10 H -0.185 1.185 11 H -0.223 1.223 12 H -0.174 1.174 13 N -0.316 5.316 14 C 0.281 3.719 15 O -0.418 6.418 16 C 0.301 3.699 17 O -0.387 6.387 18 N -0.274 5.274 19 C 0.034 3.966 20 C -0.116 4.116 21 C -0.095 4.095 22 C -0.011 4.011 23 C -0.031 4.031 24 N -0.132 5.132 25 C -0.153 4.153 26 C 0.062 3.938 27 O -0.239 6.239 28 C -0.079 4.079 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.248 0.752 36 H 0.272 0.728 37 H 0.167 0.833 38 H 0.176 0.824 39 H 0.186 0.814 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -21.999 6.843 -12.383 26.155 hybrid contribution 0.321 -0.503 1.015 1.177 sum -21.678 6.340 -11.368 25.285 Atomic orbital electron populations 1.21794 0.94721 1.01066 1.01796 1.22245 0.96272 0.97970 1.01414 1.19024 0.93596 0.90034 0.82878 0.94268 1.21239 0.90207 1.39071 1.07140 0.92824 1.25596 0.95817 0.95742 0.99960 1.69987 1.10494 1.45883 1.30856 0.86006 0.79576 0.79990 0.77948 1.18531 1.22258 1.17383 1.45915 1.14639 1.53294 1.17790 1.19918 0.83346 0.80664 0.88012 1.90742 1.51304 1.59514 1.40207 1.20206 0.82549 0.79042 0.88137 1.90748 1.50768 1.57357 1.39844 1.42830 1.16777 1.54971 1.12807 1.17518 0.91227 0.99590 0.88297 1.21143 1.00377 0.95911 0.94187 1.21140 0.94117 0.98356 0.95894 1.15725 0.94143 1.02626 0.88625 1.25625 0.92554 0.92500 0.92447 1.81306 1.09020 1.10571 1.12327 1.21176 1.01326 1.00247 0.92588 1.18466 0.88257 0.96426 0.90676 1.86112 1.19766 1.73310 1.44748 1.23454 0.78185 1.03609 1.02694 0.93410 0.92994 0.92030 0.91434 0.93225 0.92026 0.75214 0.72781 0.83314 0.82417 0.81443 0.90746 0.91234 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 8.51 71.98 0.61 -4.11 16 2 C -0.14 -5.66 5.11 30.60 0.16 -5.51 16 3 C 0.25 11.04 1.83 44.25 0.08 11.12 16 4 H 0.04 1.88 6.63 -2.39 -0.02 1.86 16 5 C -0.54 -28.54 9.31 25.60 0.24 -28.30 16 6 H 0.05 3.09 7.98 -2.91 -0.02 3.06 16 7 C 0.03 1.58 5.45 84.65 0.46 2.04 16 8 N -0.93 -55.10 13.96 21.45 0.30 -54.80 16 9 Si 0.94 42.56 24.41 68.60 1.67 44.23 16 10 H -0.26 -11.08 6.83 99.48 0.68 -10.41 16 11 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.25 -10.85 6.53 99.48 0.65 -10.20 16 13 N -0.67 -25.30 5.01 -447.53 -2.24 -27.55 16 14 C 0.50 16.95 6.45 87.23 0.56 17.51 16 15 O -0.54 -19.57 13.62 -3.27 -0.04 -19.61 16 16 C 0.52 14.66 7.73 87.23 0.67 15.34 16 17 O -0.51 -15.58 13.87 -3.33 -0.05 -15.63 16 18 N -0.63 -14.14 5.16 -304.45 -1.57 -15.71 16 19 C 0.13 2.52 6.32 38.43 0.24 2.77 16 20 C -0.10 -1.77 8.67 22.34 0.19 -1.57 16 21 C -0.07 -1.04 9.74 22.53 0.22 -0.82 16 22 C -0.01 -0.09 5.74 -21.30 -0.12 -0.22 16 23 C 0.28 4.66 15.32 88.33 1.35 6.02 16 24 N -0.46 -9.81 18.54 19.00 0.35 -9.46 16 25 C -0.13 -1.54 8.74 22.62 0.20 -1.34 16 26 C 0.11 1.69 6.70 22.57 0.15 1.84 16 27 O -0.33 -4.72 10.03 -93.14 -0.93 -5.65 16 28 C 0.01 0.09 9.81 113.37 1.11 1.20 16 29 H 0.05 1.72 7.85 -2.39 -0.02 1.70 16 30 H 0.05 1.75 5.64 -2.39 -0.01 1.74 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 33 H 0.05 2.09 3.22 -2.39 -0.01 2.08 16 34 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 35 H 0.41 15.07 8.01 -92.71 -0.74 14.33 16 36 H 0.43 9.01 8.02 -92.71 -0.74 8.27 16 37 H 0.15 3.13 6.17 -2.91 -0.02 3.11 16 38 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 39 H 0.17 1.06 6.28 -2.91 -0.02 1.04 16 40 H 0.07 0.24 7.66 -2.39 -0.02 0.22 16 41 H 0.07 0.30 7.66 -2.39 -0.02 0.28 16 42 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -66.32 356.41 3.17 -63.15 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -0.45 Total: 25.05 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 6.14 Total: 15.97 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -3.16 Total: -107.51 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -1.03 Total: -40.89 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.67 Total: 44.23 kcal Total: -66.32 3.17 -63.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527129778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.378 kcal (2) G-P(sol) polarization free energy of solvation -66.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds