Wall clock time and date at job start Tue Mar 31 2020 16:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39754 * 125.83755 * 2 1 4 4 C 1.36115 * 107.82579 * 180.14511 * 3 2 1 5 5 N 1.39469 * 126.21752 * 179.90550 * 4 3 2 6 6 C 1.34782 * 119.99904 * 359.68715 * 5 4 3 7 7 O 1.21294 * 120.00134 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00113 * 180.02562 * 6 5 4 9 9 O 1.42897 * 109.46980 * 180.02562 * 8 6 5 10 10 C 1.35999 * 116.99765 * 179.97438 * 9 8 6 11 11 C 1.38563 * 120.07024 * 359.97438 * 10 9 8 12 12 C 1.38241 * 119.99765 * 180.02562 * 11 10 9 13 13 C 1.38255 * 120.14765 * 359.97368 * 12 11 10 14 14 C 1.38247 * 120.14468 * 0.02562 * 13 12 11 15 15 C 1.38558 * 119.99917 * 359.97438 * 14 13 12 16 16 O 1.35995 * 120.07405 * 180.02562 * 15 14 13 17 17 N 1.35262 * 107.56647 * 359.64277 * 4 3 2 18 18 C 1.46495 * 126.04906 * 180.23141 * 17 4 3 19 19 C 1.50701 * 109.47489 * 89.99309 * 18 17 4 20 20 H 1.07997 * 119.99738 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00041 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00359 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00118 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47033 * 89.99567 * 23 21 19 25 25 H 1.48496 * 109.47605 * 209.99867 * 23 21 19 26 26 H 1.48504 * 109.46945 * 330.00216 * 23 21 19 27 27 N 1.30841 * 125.83464 * 179.74195 * 2 1 3 28 28 H 1.08996 * 109.46589 * 270.23669 * 1 2 3 29 29 H 1.09000 * 109.46670 * 30.23341 * 1 2 3 30 30 H 1.08997 * 109.47525 * 150.23799 * 1 2 3 31 31 H 1.08002 * 126.08735 * 0.02688 * 3 2 1 32 32 H 0.96998 * 120.00224 * 179.69227 * 5 4 3 33 33 H 1.08996 * 109.46905 * 59.99665 * 8 6 5 34 34 H 1.09004 * 109.46642 * 299.99603 * 8 6 5 35 35 H 1.07998 * 120.00246 * 359.97438 * 11 10 9 36 36 H 1.08004 * 119.92819 * 179.97438 * 12 11 10 37 37 H 1.07998 * 119.92771 * 179.74871 * 13 12 11 38 38 H 1.07996 * 120.00061 * 180.02562 * 14 13 12 39 39 H 0.96696 * 114.00519 * 269.95573 * 16 15 14 40 40 H 1.08997 * 109.47347 * 210.00015 * 18 17 4 41 41 H 1.09004 * 109.46729 * 329.99655 * 18 17 4 42 42 H 0.96996 * 120.00330 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6198 0.7121 -0.0033 5 7 4.7514 1.5273 -0.0063 6 6 4.6158 2.8683 -0.0124 7 8 3.5097 3.3661 -0.0158 8 6 5.8385 3.7493 -0.0162 9 8 5.4374 5.1208 -0.0219 10 6 6.4271 6.0535 -0.0254 11 6 7.7548 5.6570 -0.0227 12 6 8.7597 6.6063 -0.0257 13 6 8.4433 7.9522 -0.0319 14 6 7.1207 8.3545 -0.0345 15 6 6.1087 7.4081 -0.0316 16 8 4.8071 7.8022 -0.0347 17 7 3.6093 -0.6405 0.0028 18 6 4.7870 -1.5117 0.0067 19 6 5.1909 -1.8040 1.4289 20 1 4.6265 -1.3833 2.2479 21 6 6.2810 -2.6086 1.6844 22 7 6.9686 -3.1206 0.6871 23 14 6.7812 -2.9715 3.4472 24 1 6.0816 -4.1936 3.9187 25 1 8.2493 -3.1858 3.5111 26 1 6.4103 -1.8237 4.3133 27 7 2.2731 -1.0607 0.0048 28 1 -0.3632 0.0042 1.0276 29 1 -0.3633 0.8879 -0.5175 30 1 -0.3634 -0.8921 -0.5101 31 1 1.9902 2.1597 0.0004 32 1 5.6359 1.1293 -0.0040 33 1 6.4338 3.5407 -0.9051 34 1 6.4334 3.5488 0.8749 35 1 8.0046 4.6063 -0.0175 36 1 9.7942 6.2960 -0.0233 37 1 9.2312 8.6909 -0.0301 38 1 6.8763 9.4064 -0.0397 39 1 4.4294 7.9193 0.8477 40 1 4.5498 -2.4456 -0.5029 41 1 5.6084 -1.0146 -0.5094 42 1 7.7353 -3.6870 0.8669 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532527136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:40 Heat of formation + Delta-G solvation = -4.931741 kcal Electronic energy + Delta-G solvation = -27187.097846 eV Core-core repulsion = 23135.053213 eV Total energy + Delta-G solvation = -4052.044633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.04640 -40.59803 -39.26836 -37.79414 -36.70690 -34.82394 -33.82173 -32.12929 -30.71043 -30.44058 -29.30881 -28.81617 -27.43360 -26.07399 -23.33109 -22.87222 -22.60807 -21.43448 -19.84600 -19.48809 -18.90958 -17.92922 -17.18193 -16.84117 -16.64557 -16.36024 -16.10171 -15.78242 -15.01513 -14.96891 -14.76961 -14.47773 -14.29808 -14.04270 -13.89400 -13.13370 -12.84848 -12.79085 -12.62126 -12.53526 -12.40064 -12.08514 -11.81981 -11.72804 -11.61121 -11.40350 -11.12057 -10.93706 -10.81547 -10.47082 -10.38812 -9.97640 -9.86098 -9.55485 -9.19007 -8.77189 -8.43478 -7.97304 -7.50575 -6.38525 -4.47336 0.89104 1.04692 2.12154 2.18425 2.99805 3.12866 3.19911 3.20196 3.25345 3.31801 3.54292 3.77089 3.95747 4.19657 4.35380 4.56712 4.64399 4.71215 4.78922 4.93342 4.94816 5.03375 5.24012 5.32698 5.51561 5.59640 5.87836 5.94018 6.02772 6.10905 6.12302 6.14079 6.20198 6.33943 6.35879 6.61071 6.78047 6.89529 6.99736 7.43201 7.50943 7.52107 7.56534 7.74285 7.83552 8.17882 8.56608 8.65747 9.20599 10.68528 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.010340 B = 0.003101 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.259559 B = 9028.029840 C =11228.894759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.051 3.949 3 C -0.293 4.293 4 C 0.302 3.698 5 N -0.636 5.636 6 C 0.521 3.479 7 O -0.489 6.489 8 C 0.045 3.955 9 O -0.278 6.278 10 C 0.106 3.894 11 C -0.197 4.197 12 C -0.087 4.087 13 C -0.144 4.144 14 C -0.108 4.108 15 C 0.078 3.922 16 O -0.485 6.485 17 N -0.343 5.343 18 C 0.256 3.744 19 C -0.542 4.542 20 H 0.065 0.935 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.906 3.094 24 H -0.276 1.276 25 H -0.283 1.283 26 H -0.272 1.272 27 N -0.283 5.283 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.162 0.838 32 H 0.418 0.582 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.388 0.612 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 19.416 -1.218 19.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C -0.325 4.325 4 C 0.079 3.921 5 N -0.284 5.284 6 C 0.306 3.694 7 O -0.361 6.361 8 C -0.034 4.034 9 O -0.190 6.190 10 C 0.060 3.940 11 C -0.216 4.216 12 C -0.105 4.105 13 C -0.162 4.162 14 C -0.127 4.127 15 C 0.032 3.968 16 O -0.294 6.294 17 N -0.129 5.129 18 C 0.138 3.862 19 C -0.580 4.580 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.527 5.527 23 Si 0.733 3.267 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.197 1.197 27 N -0.108 5.108 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.179 0.821 32 H 0.254 0.746 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.153 0.847 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.244 0.756 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.774 18.344 -1.883 18.648 hybrid contribution 1.260 0.060 1.473 1.939 sum 4.034 18.404 -0.411 18.846 Atomic orbital electron populations 1.20029 0.87490 1.02400 1.02210 1.22038 0.96576 0.90966 1.01742 1.21296 0.89059 1.00549 1.21620 1.17823 0.87677 0.83331 1.03232 1.42480 1.08636 1.04985 1.72340 1.19816 0.90628 0.81475 0.77530 1.90699 1.26190 1.73413 1.45760 1.22393 0.95586 0.80842 1.04599 1.86221 1.31094 1.13352 1.88316 1.19552 0.87660 0.88905 0.97888 1.21280 0.91333 1.01107 1.07897 1.21006 0.99174 0.92649 0.97684 1.20979 0.95854 0.96100 1.03277 1.21277 0.92074 0.99404 0.99906 1.17772 0.84982 0.87937 1.06076 1.84906 1.21967 1.89090 1.33459 1.49368 1.06605 1.02044 1.54873 1.19633 0.77789 0.89815 0.98931 1.21346 1.13272 1.32047 0.91332 0.91673 1.24936 0.95675 0.94839 0.98219 1.69914 1.19170 1.32493 1.31153 0.86353 0.77629 0.79145 0.83575 1.20159 1.20829 1.19685 1.77368 0.86055 1.21744 1.25670 0.91263 0.91078 0.91504 0.82093 0.74575 0.88312 0.88209 0.84685 0.85290 0.85392 0.84667 0.75608 0.92469 0.93805 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.01 0.38 -0.56 16 2 C 0.05 1.04 7.21 -82.44 -0.59 0.44 16 3 C -0.29 -6.04 9.58 -39.78 -0.38 -6.42 16 4 C 0.30 6.29 7.66 -153.16 -1.17 5.11 16 5 N -0.64 -10.69 5.42 -11.46 -0.06 -10.75 16 6 C 0.52 8.17 7.87 -10.98 -0.09 8.08 16 7 O -0.49 -9.34 13.63 -14.36 -0.20 -9.53 16 8 C 0.04 0.51 5.22 36.01 0.19 0.70 16 9 O -0.28 -3.77 9.45 -47.36 -0.45 -4.22 16 10 C 0.11 1.24 6.70 -39.12 -0.26 0.98 16 11 C -0.20 -1.83 9.04 -39.46 -0.36 -2.19 16 12 C -0.09 -0.69 10.04 -39.57 -0.40 -1.08 16 13 C -0.14 -1.09 10.04 -39.57 -0.40 -1.49 16 14 C -0.11 -0.94 9.98 -39.46 -0.39 -1.33 16 15 C 0.08 0.86 6.72 -39.12 -0.26 0.60 16 16 O -0.48 -5.48 13.29 -34.23 -0.45 -5.93 16 17 N -0.34 -7.95 3.60 -61.57 -0.22 -8.17 16 18 C 0.26 6.26 6.01 -5.20 -0.03 6.23 16 19 C -0.54 -14.25 9.39 -34.44 -0.32 -14.58 16 20 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 21 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.89 -23.81 13.29 55.43 0.74 -23.07 16 23 Si 0.91 20.26 29.54 -169.99 -5.02 15.24 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 N -0.28 -6.56 12.56 33.65 0.42 -6.13 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.16 3.26 5.83 -52.49 -0.31 2.96 16 32 H 0.42 6.19 7.96 -40.82 -0.33 5.87 16 33 H 0.10 0.86 7.67 -51.93 -0.40 0.46 16 34 H 0.10 0.88 7.66 -51.93 -0.40 0.49 16 35 H 0.14 1.00 6.30 -52.49 -0.33 0.67 16 36 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 37 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.39 2.72 9.06 45.56 0.41 3.13 16 40 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.04 1.02 7.50 -51.93 -0.39 0.63 16 42 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 368.30 15.07 5.55 5.55 Total: -1.00 -34.33 368.30 -8.13 -42.46 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -4.24 Total: 8.43 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -4.19 Total: -3.86 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.88 Total: -48.13 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -1.10 Total: -19.69 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.33 -8.13 -42.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532527136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.526 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds