Wall clock time and date at job start Tue Mar 31 2020 16:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39754 * 125.83755 * 2 1 4 4 C 1.36115 * 107.82579 * 180.14511 * 3 2 1 5 5 N 1.39469 * 126.21752 * 179.90550 * 4 3 2 6 6 C 1.34782 * 119.99904 * 359.68715 * 5 4 3 7 7 O 1.21294 * 120.00134 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00113 * 180.02562 * 6 5 4 9 9 O 1.42897 * 109.46980 * 180.02562 * 8 6 5 10 10 C 1.35999 * 116.99765 * 179.97438 * 9 8 6 11 11 C 1.38563 * 120.07024 * 359.97438 * 10 9 8 12 12 C 1.38241 * 119.99765 * 180.02562 * 11 10 9 13 13 C 1.38255 * 120.14765 * 359.97368 * 12 11 10 14 14 C 1.38247 * 120.14468 * 0.02562 * 13 12 11 15 15 C 1.38558 * 119.99917 * 359.97438 * 14 13 12 16 16 O 1.35995 * 120.07405 * 180.02562 * 15 14 13 17 17 N 1.35262 * 107.56647 * 359.64277 * 4 3 2 18 18 C 1.46495 * 126.04906 * 180.23141 * 17 4 3 19 19 C 1.50701 * 109.47489 * 89.99309 * 18 17 4 20 20 H 1.07997 * 119.99738 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00041 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00359 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00118 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47033 * 89.99567 * 23 21 19 25 25 H 1.48496 * 109.47605 * 209.99867 * 23 21 19 26 26 H 1.48504 * 109.46945 * 330.00216 * 23 21 19 27 27 N 1.30841 * 125.83464 * 179.74195 * 2 1 3 28 28 H 1.08996 * 109.46589 * 270.23669 * 1 2 3 29 29 H 1.09000 * 109.46670 * 30.23341 * 1 2 3 30 30 H 1.08997 * 109.47525 * 150.23799 * 1 2 3 31 31 H 1.08002 * 126.08735 * 0.02688 * 3 2 1 32 32 H 0.96998 * 120.00224 * 179.69227 * 5 4 3 33 33 H 1.08996 * 109.46905 * 59.99665 * 8 6 5 34 34 H 1.09004 * 109.46642 * 299.99603 * 8 6 5 35 35 H 1.07998 * 120.00246 * 359.97438 * 11 10 9 36 36 H 1.08004 * 119.92819 * 179.97438 * 12 11 10 37 37 H 1.07998 * 119.92771 * 179.74871 * 13 12 11 38 38 H 1.07996 * 120.00061 * 180.02562 * 14 13 12 39 39 H 0.96696 * 114.00519 * 269.95573 * 16 15 14 40 40 H 1.08997 * 109.47347 * 210.00015 * 18 17 4 41 41 H 1.09004 * 109.46729 * 329.99655 * 18 17 4 42 42 H 0.96996 * 120.00330 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6198 0.7121 -0.0033 5 7 4.7514 1.5273 -0.0063 6 6 4.6158 2.8683 -0.0124 7 8 3.5097 3.3661 -0.0158 8 6 5.8385 3.7493 -0.0162 9 8 5.4374 5.1208 -0.0219 10 6 6.4271 6.0535 -0.0254 11 6 7.7548 5.6570 -0.0227 12 6 8.7597 6.6063 -0.0257 13 6 8.4433 7.9522 -0.0319 14 6 7.1207 8.3545 -0.0345 15 6 6.1087 7.4081 -0.0316 16 8 4.8071 7.8022 -0.0347 17 7 3.6093 -0.6405 0.0028 18 6 4.7870 -1.5117 0.0067 19 6 5.1909 -1.8040 1.4289 20 1 4.6265 -1.3833 2.2479 21 6 6.2810 -2.6086 1.6844 22 7 6.9686 -3.1206 0.6871 23 14 6.7812 -2.9715 3.4472 24 1 6.0816 -4.1936 3.9187 25 1 8.2493 -3.1858 3.5111 26 1 6.4103 -1.8237 4.3133 27 7 2.2731 -1.0607 0.0048 28 1 -0.3632 0.0042 1.0276 29 1 -0.3633 0.8879 -0.5175 30 1 -0.3634 -0.8921 -0.5101 31 1 1.9902 2.1597 0.0004 32 1 5.6359 1.1293 -0.0040 33 1 6.4338 3.5407 -0.9051 34 1 6.4334 3.5488 0.8749 35 1 8.0046 4.6063 -0.0175 36 1 9.7942 6.2960 -0.0233 37 1 9.2312 8.6909 -0.0301 38 1 6.8763 9.4064 -0.0397 39 1 4.4294 7.9193 0.8477 40 1 4.5498 -2.4456 -0.5029 41 1 5.6084 -1.0146 -0.5094 42 1 7.7353 -3.6870 0.8669 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532527136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:38 Heat of formation + Delta-G solvation = -27.814645 kcal Electronic energy + Delta-G solvation = -27188.090123 eV Core-core repulsion = 23135.053213 eV Total energy + Delta-G solvation = -4053.036911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.50896 -41.52482 -40.51443 -38.70143 -37.42169 -36.34034 -35.63944 -33.86975 -31.61364 -31.25537 -30.68742 -30.06126 -28.64581 -27.82354 -24.84153 -24.03832 -23.37871 -22.63066 -21.35066 -20.86555 -19.78027 -18.93708 -18.72464 -18.45247 -17.71007 -17.60680 -17.13072 -16.64427 -16.59403 -16.19473 -16.00547 -15.59047 -15.40707 -15.33836 -14.91381 -14.60561 -14.44358 -14.06590 -13.84444 -13.65179 -13.40863 -13.32709 -13.14233 -13.03501 -12.90592 -12.72743 -12.40043 -12.30136 -12.17079 -11.98629 -11.71175 -11.52882 -11.49912 -10.99777 -10.77122 -9.83908 -9.67318 -9.17129 -9.12139 -8.37140 -6.54615 0.24204 0.37080 0.69024 0.99159 1.36137 1.38860 1.47917 1.53812 1.88306 1.98909 2.31733 2.49480 2.67842 2.93543 3.24847 3.28774 3.79993 3.86325 3.95018 3.98410 4.08805 4.19116 4.32246 4.46202 4.57580 4.59950 4.69378 4.79205 4.84013 4.88251 4.91667 4.93094 5.18306 5.21015 5.23644 5.34772 5.50451 5.52510 5.73162 5.75865 5.91921 6.06013 6.13197 6.25810 6.55486 6.83630 6.86008 6.98250 7.17578 8.69337 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.010340 B = 0.003101 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.259559 B = 9028.029840 C =11228.894759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.059 3.941 3 C -0.308 4.308 4 C 0.301 3.699 5 N -0.631 5.631 6 C 0.522 3.478 7 O -0.526 6.526 8 C 0.052 3.948 9 O -0.309 6.309 10 C 0.078 3.922 11 C -0.200 4.200 12 C -0.089 4.089 13 C -0.139 4.139 14 C -0.112 4.112 15 C 0.053 3.947 16 O -0.506 6.506 17 N -0.364 5.364 18 C 0.271 3.729 19 C -0.557 4.557 20 H 0.047 0.953 21 C 0.030 3.970 22 N -0.913 5.913 23 Si 0.968 3.032 24 H -0.279 1.279 25 H -0.268 1.268 26 H -0.271 1.271 27 N -0.328 5.328 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.165 0.835 32 H 0.426 0.574 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.153 0.847 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.152 0.848 39 H 0.401 0.599 40 H 0.027 0.973 41 H 0.052 0.948 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.182 20.721 -0.519 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C -0.340 4.340 4 C 0.078 3.922 5 N -0.281 5.281 6 C 0.309 3.691 7 O -0.400 6.400 8 C -0.026 4.026 9 O -0.222 6.222 10 C 0.032 3.968 11 C -0.219 4.219 12 C -0.107 4.107 13 C -0.157 4.157 14 C -0.130 4.130 15 C 0.008 3.992 16 O -0.318 6.318 17 N -0.150 5.150 18 C 0.152 3.848 19 C -0.595 4.595 20 H 0.065 0.935 21 C -0.172 4.172 22 N -0.550 5.550 23 Si 0.792 3.208 24 H -0.204 1.204 25 H -0.192 1.192 26 H -0.195 1.195 27 N -0.153 5.153 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.182 0.818 32 H 0.265 0.735 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.171 0.829 36 H 0.174 0.826 37 H 0.174 0.826 38 H 0.170 0.830 39 H 0.258 0.742 40 H 0.046 0.954 41 H 0.070 0.930 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.607 19.667 -1.187 20.235 hybrid contribution 0.687 -0.231 1.225 1.423 sum 5.294 19.437 0.037 20.145 Atomic orbital electron populations 1.20231 0.83907 1.04069 1.03752 1.22874 0.98769 0.89980 0.98992 1.21484 0.89286 1.00796 1.22462 1.18185 0.89239 0.82875 1.01863 1.42615 1.08006 1.05240 1.72231 1.20692 0.91694 0.81046 0.75693 1.90670 1.28153 1.73846 1.47313 1.22465 0.93150 0.79584 1.07378 1.86151 1.32744 1.14136 1.89164 1.19816 0.88273 0.88685 0.99982 1.21553 0.90571 1.02490 1.07285 1.21402 1.00199 0.92567 0.96513 1.21383 0.96004 0.96844 1.01452 1.21529 0.92163 0.99876 0.99439 1.18168 0.85240 0.88523 1.07305 1.84849 1.22757 1.89205 1.34944 1.49196 1.06393 1.02701 1.56697 1.19274 0.78568 0.89058 0.97875 1.21403 1.13667 1.32821 0.91598 0.93453 1.25651 0.95360 0.94252 1.01973 1.69982 1.19485 1.32651 1.32925 0.85404 0.77900 0.78583 0.78884 1.20437 1.19238 1.19520 1.77317 0.86405 1.23457 1.28095 0.89631 0.88724 0.90504 0.81794 0.73504 0.85259 0.85319 0.82936 0.82594 0.82552 0.83038 0.74159 0.95443 0.92985 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.75 10.44 71.24 0.74 -1.00 16 2 C 0.06 2.39 7.21 43.08 0.31 2.70 16 3 C -0.31 -12.85 9.58 22.14 0.21 -12.64 16 4 C 0.30 12.76 7.66 131.32 1.01 13.76 16 5 N -0.63 -21.21 5.42 -308.55 -1.67 -22.88 16 6 C 0.52 16.21 7.87 87.66 0.69 16.90 16 7 O -0.53 -20.37 13.63 15.97 0.22 -20.15 16 8 C 0.05 1.11 5.22 71.24 0.37 1.48 16 9 O -0.31 -8.27 9.45 -67.13 -0.63 -8.90 16 10 C 0.08 1.75 6.70 22.57 0.15 1.90 16 11 C -0.20 -3.26 9.04 22.35 0.20 -3.06 16 12 C -0.09 -1.12 10.04 22.27 0.22 -0.90 16 13 C -0.14 -1.69 10.04 22.28 0.22 -1.47 16 14 C -0.11 -1.75 9.98 22.35 0.22 -1.53 16 15 C 0.05 1.15 6.72 22.57 0.15 1.30 16 16 O -0.51 -11.68 13.29 -79.63 -1.06 -12.74 16 17 N -0.36 -17.34 3.60 -348.72 -1.26 -18.59 16 18 C 0.27 13.64 6.01 85.63 0.51 14.16 16 19 C -0.56 -29.77 9.39 25.60 0.24 -29.53 16 20 H 0.05 2.66 7.81 -2.91 -0.02 2.63 16 21 C 0.03 1.53 5.46 84.65 0.46 1.99 16 22 N -0.91 -48.69 13.29 21.45 0.28 -48.41 16 23 Si 0.97 41.07 29.54 68.60 2.03 43.10 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 25 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 27 N -0.33 -15.55 12.56 -47.45 -0.60 -16.14 16 28 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.16 6.73 5.83 -2.91 -0.02 6.71 16 32 H 0.43 12.48 7.96 -92.71 -0.74 11.74 16 33 H 0.13 1.94 7.67 -2.39 -0.02 1.93 16 34 H 0.13 1.98 7.66 -2.39 -0.02 1.96 16 35 H 0.15 1.79 6.30 -2.91 -0.02 1.77 16 36 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 38 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.40 5.93 9.06 -74.06 -0.67 5.26 16 40 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 2.48 7.50 -2.38 -0.02 2.46 16 42 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 Total: -1.00 -76.07 368.30 2.72 -73.35 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -0.32 Total: 27.30 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 5.73 Total: 4.07 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -3.24 Total: -106.02 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -1.48 Total: -41.79 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.10 kcal Total: -76.07 2.72 -73.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532527136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.534 kcal (2) G-P(sol) polarization free energy of solvation -76.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds