Wall clock time and date at job start Tue Mar 31 2020 16:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35986 * 117.00452 * 2 1 4 4 C 1.38968 * 119.90021 * 359.97438 * 3 2 1 5 5 C 1.38043 * 120.33446 * 180.02562 * 4 3 2 6 6 C 1.38665 * 120.15412 * 359.97438 * 5 4 3 7 7 O 1.35736 * 120.09732 * 179.97438 * 6 5 4 8 8 C 1.40102 * 119.80712 * 359.97438 * 6 5 4 9 9 C 1.47505 * 120.16956 * 179.97438 * 8 6 5 10 10 O 1.21614 * 119.99601 * 0.02562 * 9 8 6 11 11 N 1.34772 * 120.00556 * 179.97438 * 9 8 6 12 12 C 1.39380 * 120.00379 * 180.02562 * 11 9 8 13 13 C 1.36146 * 126.26155 * 0.03200 * 12 11 9 14 14 C 1.39733 * 107.86077 * 179.97438 * 13 12 11 15 15 C 1.50701 * 125.78346 * 179.97438 * 14 13 12 16 16 N 1.30835 * 108.43980 * 359.97438 * 14 13 12 17 17 N 1.35805 * 126.26438 * 179.97438 * 12 11 9 18 18 C 1.46502 * 126.09707 * 0.06035 * 17 12 11 19 19 C 1.50694 * 109.47161 * 269.98317 * 18 17 12 20 20 H 1.08000 * 120.00069 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00182 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99730 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47270 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46996 * 119.99884 * 23 21 19 26 26 H 1.48502 * 109.47046 * 239.99398 * 23 21 19 27 27 C 1.38233 * 119.91022 * 180.23501 * 3 2 1 28 28 H 1.09003 * 109.47026 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46901 * 299.99773 * 1 2 3 30 30 H 1.09006 * 109.46982 * 59.99915 * 1 2 3 31 31 H 1.07995 * 119.83548 * 0.02562 * 4 3 2 32 32 H 1.08010 * 119.92068 * 179.97438 * 5 4 3 33 33 H 0.96697 * 113.99508 * 270.02383 * 7 6 5 34 34 H 0.97003 * 120.00012 * 0.02562 * 11 9 8 35 35 H 1.07995 * 126.07235 * 0.02562 * 13 12 11 36 36 H 1.09001 * 109.47010 * 270.02898 * 15 14 13 37 37 H 1.08998 * 109.46435 * 30.02479 * 15 14 13 38 38 H 1.08994 * 109.47526 * 150.02387 * 15 14 13 39 39 H 1.09006 * 109.46515 * 29.97671 * 18 17 12 40 40 H 1.08998 * 109.47494 * 149.97644 * 18 17 12 41 41 H 0.97002 * 119.99592 * 179.97438 * 22 21 19 42 42 H 1.07998 * 120.07660 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2876 2.3758 -0.0005 5 6 1.9051 3.6104 -0.0011 6 6 3.2890 3.6971 -0.0005 7 8 3.8949 4.9117 -0.0016 8 6 4.0601 2.5274 0.0011 9 6 5.5328 2.6103 0.0011 10 8 6.0806 3.6960 0.0001 11 7 6.2713 1.4829 0.0032 12 6 7.6629 1.5612 0.0037 13 6 8.4051 2.7026 0.0029 14 6 9.7537 2.3367 0.0045 15 6 10.9242 3.2859 0.0037 16 7 9.8282 1.0305 0.0067 17 7 8.5265 0.5132 0.0062 18 6 8.1617 -0.9057 0.0076 19 6 8.0352 -1.3905 1.4289 20 1 8.2095 -0.7099 2.2491 21 6 7.6970 -2.7029 1.6821 22 7 7.4843 -3.5316 0.6833 23 14 7.5395 -3.3036 3.4439 24 1 7.8268 -2.1840 4.3762 25 1 6.1593 -3.7999 3.6761 26 1 8.5076 -4.4046 3.6799 27 6 3.4270 1.2817 -0.0049 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2094 2.3144 -0.0005 32 1 1.3088 4.5110 -0.0019 33 1 4.0705 5.2628 -0.8853 34 1 5.8343 0.6168 0.0043 35 1 8.0201 3.7115 0.0022 36 1 11.2068 3.5134 -1.0241 37 1 10.6456 4.2066 0.5162 38 1 11.7668 2.8243 0.5185 39 1 7.2097 -1.0366 -0.5070 40 1 8.9337 -1.4799 -0.5048 41 1 7.2467 -4.4551 0.8615 42 1 4.0149 0.3757 -0.0083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000539845423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:13 Heat of formation + Delta-G solvation = -3.941191 kcal Electronic energy + Delta-G solvation = -27938.748125 eV Core-core repulsion = 23886.746445 eV Total energy + Delta-G solvation = -4052.001680 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.06302 -40.39991 -39.23328 -38.06089 -36.03564 -34.66924 -33.73535 -32.12446 -31.65171 -29.71006 -29.06675 -28.08496 -27.32594 -25.99813 -24.26356 -23.00864 -22.58939 -21.25722 -19.84975 -19.43890 -18.42016 -18.12679 -16.96292 -16.78979 -16.55499 -16.06370 -15.96781 -15.59517 -15.06450 -14.93409 -14.58999 -14.34868 -14.14925 -13.92843 -13.64002 -13.09465 -12.83859 -12.75297 -12.73389 -12.57196 -12.46809 -12.02217 -11.76395 -11.64973 -11.54307 -11.14902 -11.03398 -10.89979 -10.79545 -10.35947 -10.31323 -9.85751 -9.76570 -9.47230 -9.39330 -8.70202 -8.32457 -7.87536 -7.40871 -6.31242 -4.39393 0.50190 1.03133 2.42277 2.76255 3.00178 3.05498 3.17494 3.25924 3.32572 3.46721 3.74191 3.80434 4.07217 4.27037 4.41090 4.44171 4.75171 4.86105 4.86876 5.02255 5.05360 5.12709 5.20838 5.38892 5.51885 5.65065 5.66935 5.92664 6.01606 6.05542 6.16298 6.20289 6.21408 6.32127 6.44478 6.70086 6.86135 7.04869 7.06485 7.53874 7.60150 7.60515 7.65030 7.82073 7.93280 8.31118 8.64440 8.73683 9.28327 10.75940 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.008152 B = 0.004687 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3433.841963 B = 5972.340227 C = 8858.412447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.114 3.886 4 C -0.166 4.166 5 C -0.116 4.116 6 C 0.134 3.866 7 O -0.474 6.474 8 C -0.118 4.118 9 C 0.564 3.436 10 O -0.493 6.493 11 N -0.635 5.635 12 C 0.301 3.699 13 C -0.292 4.292 14 C 0.050 3.950 15 C -0.062 4.062 16 N -0.283 5.283 17 N -0.346 5.346 18 C 0.256 3.744 19 C -0.540 4.540 20 H 0.066 0.934 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.905 3.095 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.102 4.102 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.392 0.608 34 H 0.415 0.585 35 H 0.162 0.838 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.043 0.957 40 H 0.057 0.943 41 H 0.268 0.732 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.024 11.724 -4.519 19.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.069 3.931 4 C -0.185 4.185 5 C -0.135 4.135 6 C 0.087 3.913 7 O -0.285 6.285 8 C -0.122 4.122 9 C 0.351 3.649 10 O -0.367 6.367 11 N -0.282 5.282 12 C 0.079 3.921 13 C -0.323 4.323 14 C -0.115 4.115 15 C -0.121 4.121 16 N -0.109 5.109 17 N -0.132 5.132 18 C 0.139 3.861 19 C -0.578 4.578 20 H 0.084 0.916 21 C -0.136 4.136 22 N -0.527 5.527 23 Si 0.731 3.269 24 H -0.195 1.195 25 H -0.206 1.206 26 H -0.205 1.205 27 C -0.121 4.121 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.250 0.750 34 H 0.253 0.747 35 H 0.180 0.820 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.931 10.901 -3.963 18.128 hybrid contribution -1.282 -0.399 0.503 1.434 sum -15.213 10.502 -3.460 18.807 Atomic orbital electron populations 1.23103 0.78222 1.04333 1.01240 1.86178 1.21449 1.26102 1.88644 1.18782 0.91870 0.84637 0.97838 1.21305 1.00429 0.91668 1.05141 1.21188 0.93414 0.98035 1.00855 1.18268 0.89609 0.84503 0.98898 1.84814 1.80119 1.30192 1.33325 1.20008 0.92660 0.93306 1.06212 1.17785 0.86043 0.83620 0.77405 1.90745 1.71916 1.27093 1.46933 1.42655 1.03295 1.10585 1.71697 1.17990 0.81202 0.89949 1.02949 1.21273 0.91230 0.98260 1.21574 1.22015 0.95208 0.92320 1.01981 1.20018 0.93848 0.96196 1.02005 1.77329 0.98334 1.09665 1.25535 1.49499 1.01538 1.06954 1.55206 1.19627 0.96936 0.70632 0.98941 1.21390 1.48970 0.96081 0.91372 0.91619 1.24929 0.94471 0.96086 0.98160 1.69928 1.46264 1.05545 1.31002 0.86318 0.77885 0.78924 0.83727 1.19529 1.20598 1.20530 1.20605 0.92177 0.97531 1.01804 0.87956 0.92541 0.92584 0.84558 0.84295 0.75048 0.74712 0.82030 0.91398 0.91123 0.91522 0.93891 0.92486 0.92233 0.83843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.54 10.49 -19.70 -0.21 -3.74 16 3 C 0.11 1.32 6.68 -39.31 -0.26 1.06 16 4 C -0.17 -1.53 9.02 -39.38 -0.36 -1.89 16 5 C -0.12 -1.11 9.97 -39.50 -0.39 -1.51 16 6 C 0.13 1.65 6.72 -38.72 -0.26 1.39 16 7 O -0.47 -5.86 11.57 -40.84 -0.47 -6.34 16 8 C -0.12 -1.67 5.88 -104.86 -0.62 -2.28 16 9 C 0.56 9.73 7.73 -12.49 -0.10 9.63 16 10 O -0.49 -9.31 12.28 -16.65 -0.20 -9.51 16 11 N -0.63 -11.84 5.36 -12.30 -0.07 -11.91 16 12 C 0.30 6.57 7.68 -152.75 -1.17 5.40 16 13 C -0.29 -6.13 9.58 -39.78 -0.38 -6.51 16 14 C 0.05 1.02 7.20 -82.46 -0.59 0.43 16 15 C -0.06 -0.94 10.44 36.01 0.38 -0.57 16 16 N -0.28 -6.73 12.56 33.64 0.42 -6.31 16 17 N -0.35 -8.31 3.62 -61.45 -0.22 -8.53 16 18 C 0.26 6.53 6.02 -5.20 -0.03 6.50 16 19 C -0.54 -14.76 9.39 -34.44 -0.32 -15.09 16 20 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 21 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 22 N -0.89 -24.56 13.29 55.43 0.74 -23.83 16 23 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 C -0.10 -1.34 9.47 -39.02 -0.37 -1.71 16 28 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.31 7.65 -51.93 -0.40 -0.08 16 30 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 31 H 0.14 0.85 6.27 -52.49 -0.33 0.52 16 32 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.39 3.26 9.06 45.56 0.41 3.67 16 34 H 0.41 7.27 6.02 -40.82 -0.25 7.03 16 35 H 0.16 3.29 5.82 -52.49 -0.31 2.98 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.04 1.06 7.52 -51.93 -0.39 0.67 16 40 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.14 1.91 6.40 -52.49 -0.34 1.58 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -33.99 362.37 -7.23 -41.23 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -4.07 Total: 9.72 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -3.59 Total: -2.27 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.87 Total: -50.58 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.88 Total: -19.59 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.99 -7.23 -41.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539845423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.285 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds