Wall clock time and date at job start Tue Mar 31 2020 16:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35986 * 117.00452 * 2 1 4 4 C 1.38968 * 119.90021 * 359.97438 * 3 2 1 5 5 C 1.38043 * 120.33446 * 180.02562 * 4 3 2 6 6 C 1.38665 * 120.15412 * 359.97438 * 5 4 3 7 7 O 1.35736 * 120.09732 * 179.97438 * 6 5 4 8 8 C 1.40102 * 119.80712 * 359.97438 * 6 5 4 9 9 C 1.47505 * 120.16956 * 179.97438 * 8 6 5 10 10 O 1.21614 * 119.99601 * 0.02562 * 9 8 6 11 11 N 1.34772 * 120.00556 * 179.97438 * 9 8 6 12 12 C 1.39380 * 120.00379 * 180.02562 * 11 9 8 13 13 C 1.36146 * 126.26155 * 0.03200 * 12 11 9 14 14 C 1.39733 * 107.86077 * 179.97438 * 13 12 11 15 15 C 1.50701 * 125.78346 * 179.97438 * 14 13 12 16 16 N 1.30835 * 108.43980 * 359.97438 * 14 13 12 17 17 N 1.35805 * 126.26438 * 179.97438 * 12 11 9 18 18 C 1.46502 * 126.09707 * 0.06035 * 17 12 11 19 19 C 1.50694 * 109.47161 * 269.98317 * 18 17 12 20 20 H 1.08000 * 120.00069 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00182 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99730 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47270 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.46996 * 119.99884 * 23 21 19 26 26 H 1.48502 * 109.47046 * 239.99398 * 23 21 19 27 27 C 1.38233 * 119.91022 * 180.23501 * 3 2 1 28 28 H 1.09003 * 109.47026 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46901 * 299.99773 * 1 2 3 30 30 H 1.09006 * 109.46982 * 59.99915 * 1 2 3 31 31 H 1.07995 * 119.83548 * 0.02562 * 4 3 2 32 32 H 1.08010 * 119.92068 * 179.97438 * 5 4 3 33 33 H 0.96697 * 113.99508 * 270.02383 * 7 6 5 34 34 H 0.97003 * 120.00012 * 0.02562 * 11 9 8 35 35 H 1.07995 * 126.07235 * 0.02562 * 13 12 11 36 36 H 1.09001 * 109.47010 * 270.02898 * 15 14 13 37 37 H 1.08998 * 109.46435 * 30.02479 * 15 14 13 38 38 H 1.08994 * 109.47526 * 150.02387 * 15 14 13 39 39 H 1.09006 * 109.46515 * 29.97671 * 18 17 12 40 40 H 1.08998 * 109.47494 * 149.97644 * 18 17 12 41 41 H 0.97002 * 119.99592 * 179.97438 * 22 21 19 42 42 H 1.07998 * 120.07660 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 1.2876 2.3758 -0.0005 5 6 1.9051 3.6104 -0.0011 6 6 3.2890 3.6971 -0.0005 7 8 3.8949 4.9117 -0.0016 8 6 4.0601 2.5274 0.0011 9 6 5.5328 2.6103 0.0011 10 8 6.0806 3.6960 0.0001 11 7 6.2713 1.4829 0.0032 12 6 7.6629 1.5612 0.0037 13 6 8.4051 2.7026 0.0029 14 6 9.7537 2.3367 0.0045 15 6 10.9242 3.2859 0.0037 16 7 9.8282 1.0305 0.0067 17 7 8.5265 0.5132 0.0062 18 6 8.1617 -0.9057 0.0076 19 6 8.0352 -1.3905 1.4289 20 1 8.2095 -0.7099 2.2491 21 6 7.6970 -2.7029 1.6821 22 7 7.4843 -3.5316 0.6833 23 14 7.5395 -3.3036 3.4439 24 1 7.8268 -2.1840 4.3762 25 1 6.1593 -3.7999 3.6761 26 1 8.5076 -4.4046 3.6799 27 6 3.4270 1.2817 -0.0049 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2094 2.3144 -0.0005 32 1 1.3088 4.5110 -0.0019 33 1 4.0705 5.2628 -0.8853 34 1 5.8343 0.6168 0.0043 35 1 8.0201 3.7115 0.0022 36 1 11.2068 3.5134 -1.0241 37 1 10.6456 4.2066 0.5162 38 1 11.7668 2.8243 0.5185 39 1 7.2097 -1.0366 -0.5070 40 1 8.9337 -1.4799 -0.5048 41 1 7.2467 -4.4551 0.8615 42 1 4.0149 0.3757 -0.0083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000539845423.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:10 Heat of formation + Delta-G solvation = -27.016375 kcal Electronic energy + Delta-G solvation = -27939.748740 eV Core-core repulsion = 23886.746445 eV Total energy + Delta-G solvation = -4053.002295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -42.51000 -41.55542 -40.38064 -39.10351 -36.95947 -36.22907 -35.61002 -33.86762 -32.70901 -30.80838 -30.49780 -29.63522 -27.97486 -27.81581 -25.41447 -24.72148 -23.72218 -22.49644 -21.35066 -20.87374 -19.48678 -19.09164 -18.89241 -18.24994 -17.83470 -17.13736 -16.92061 -16.66963 -16.55817 -16.31620 -16.12667 -15.62471 -15.46060 -15.10964 -14.79284 -14.52375 -14.42479 -14.05398 -13.90545 -13.60023 -13.44433 -13.40339 -13.29108 -13.12978 -12.92165 -12.73584 -12.37200 -12.34183 -11.98035 -11.85065 -11.81921 -11.70429 -11.37811 -10.90660 -10.78728 -10.29748 -9.65148 -9.20739 -9.06423 -8.39191 -6.56647 -0.48396 0.17644 0.90021 1.26977 1.32679 1.35184 1.47859 1.69030 2.02826 2.11319 2.27796 2.33090 2.57491 2.90943 3.20553 3.34986 3.63515 3.80900 3.96611 4.13264 4.20968 4.25149 4.40770 4.44662 4.54543 4.63900 4.72784 4.78421 4.80629 4.82450 4.83620 4.90515 4.95373 5.11713 5.15246 5.20072 5.25466 5.39799 5.48561 5.73816 5.94952 6.07463 6.22253 6.32650 6.53895 6.83117 6.87007 6.98932 7.15433 8.67672 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.008152 B = 0.004687 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3433.841963 B = 5972.340227 C = 8858.412447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.337 6.337 3 C 0.107 3.893 4 C -0.145 4.145 5 C -0.104 4.104 6 C 0.130 3.870 7 O -0.489 6.489 8 C -0.140 4.140 9 C 0.564 3.436 10 O -0.513 6.513 11 N -0.637 5.637 12 C 0.297 3.703 13 C -0.301 4.301 14 C 0.059 3.941 15 C -0.060 4.060 16 N -0.327 5.327 17 N -0.369 5.369 18 C 0.273 3.727 19 C -0.557 4.557 20 H 0.046 0.954 21 C 0.028 3.972 22 N -0.913 5.913 23 Si 0.968 3.032 24 H -0.278 1.278 25 H -0.265 1.265 26 H -0.272 1.272 27 C -0.119 4.119 28 H 0.113 0.887 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.176 0.824 32 H 0.175 0.825 33 H 0.408 0.592 34 H 0.417 0.583 35 H 0.171 0.829 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.030 0.970 41 H 0.275 0.725 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.545 13.050 -3.952 22.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.251 6.251 3 C 0.062 3.938 4 C -0.164 4.164 5 C -0.122 4.122 6 C 0.083 3.917 7 O -0.302 6.302 8 C -0.144 4.144 9 C 0.354 3.646 10 O -0.388 6.388 11 N -0.285 5.285 12 C 0.075 3.925 13 C -0.333 4.333 14 C -0.106 4.106 15 C -0.118 4.118 16 N -0.152 5.152 17 N -0.155 5.155 18 C 0.154 3.846 19 C -0.595 4.595 20 H 0.064 0.936 21 C -0.173 4.173 22 N -0.550 5.550 23 Si 0.792 3.208 24 H -0.202 1.202 25 H -0.189 1.189 26 H -0.197 1.197 27 C -0.139 4.139 28 H 0.131 0.869 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.193 0.807 32 H 0.192 0.808 33 H 0.267 0.733 34 H 0.255 0.745 35 H 0.188 0.812 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.048 0.952 41 H 0.084 0.916 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.477 12.234 -3.420 20.805 hybrid contribution -0.612 -0.735 0.273 0.995 sum -17.090 11.499 -3.147 20.837 Atomic orbital electron populations 1.23453 0.75790 1.05806 1.02961 1.86151 1.24061 1.26268 1.88606 1.18873 0.91362 0.85796 0.97768 1.21720 1.02170 0.90347 1.02152 1.21517 0.92126 0.99549 0.98993 1.18506 0.90698 0.83752 0.98759 1.84761 1.80425 1.30091 1.34891 1.19818 0.90484 0.94696 1.09402 1.18382 0.87366 0.82752 0.76119 1.90699 1.72686 1.27492 1.47952 1.42844 1.02210 1.11442 1.72045 1.18405 0.82475 0.89699 1.01962 1.21494 0.91549 0.98247 1.22031 1.22902 0.96766 0.91958 0.98991 1.20234 0.91902 0.95719 1.03979 1.77278 0.98582 1.11369 1.27992 1.49312 1.02342 1.06631 1.57260 1.19213 0.95868 0.71709 0.97824 1.21429 1.50038 0.96457 0.91576 0.93612 1.25678 0.93668 0.95884 1.02115 1.69996 1.46178 1.06032 1.32831 0.85360 0.78672 0.78122 0.78669 1.20244 1.18931 1.19681 1.20527 0.93415 0.96686 1.03255 0.86905 0.90928 0.90559 0.80663 0.80807 0.73276 0.74501 0.81209 0.89039 0.88769 0.90857 0.93830 0.95200 0.91570 0.85394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -7.23 10.49 -93.39 -0.98 -8.21 16 3 C 0.11 2.34 6.68 22.44 0.15 2.49 16 4 C -0.15 -2.15 9.02 22.40 0.20 -1.95 16 5 C -0.10 -1.62 9.97 22.33 0.22 -1.40 16 6 C 0.13 3.02 6.72 22.82 0.15 3.17 16 7 O -0.49 -11.48 11.57 -69.64 -0.81 -12.28 16 8 C -0.14 -4.01 5.88 -20.02 -0.12 -4.13 16 9 C 0.56 20.15 7.73 86.69 0.67 20.82 16 10 O -0.51 -19.74 12.28 16.88 0.21 -19.53 16 11 N -0.64 -25.12 5.36 -311.07 -1.67 -26.79 16 12 C 0.30 13.52 7.68 131.19 1.01 14.52 16 13 C -0.30 -12.92 9.58 22.14 0.21 -12.71 16 14 C 0.06 2.46 7.20 43.07 0.31 2.77 16 15 C -0.06 -1.73 10.44 71.24 0.74 -0.99 16 16 N -0.33 -16.10 12.56 -47.47 -0.60 -16.70 16 17 N -0.37 -18.66 3.62 -348.32 -1.26 -19.92 16 18 C 0.27 14.70 6.02 85.63 0.52 15.21 16 19 C -0.56 -31.73 9.39 25.60 0.24 -31.49 16 20 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 21 C 0.03 1.55 5.46 84.65 0.46 2.02 16 22 N -0.91 -51.24 13.29 21.45 0.28 -50.96 16 23 Si 0.97 43.55 29.54 68.60 2.03 45.57 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 25 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 C -0.12 -3.22 9.47 22.63 0.21 -3.01 16 28 H 0.11 0.93 8.14 -2.39 -0.02 0.92 16 29 H 0.07 0.54 7.65 -2.39 -0.02 0.52 16 30 H 0.08 0.50 7.65 -2.38 -0.02 0.48 16 31 H 0.18 1.21 6.27 -2.91 -0.02 1.20 16 32 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 33 H 0.41 6.31 9.06 -74.06 -0.67 5.64 16 34 H 0.42 15.79 6.02 -92.71 -0.56 15.23 16 35 H 0.17 6.96 5.82 -2.91 -0.02 6.94 16 36 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.04 2.29 7.52 -2.38 -0.02 2.27 16 40 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 42 H 0.13 3.72 6.40 -2.91 -0.02 3.70 16 Total: -1.00 -76.10 362.37 3.17 -72.93 By element: Atomic # 1 Polarization: 29.44 SS G_CDS: -0.13 Total: 29.30 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 6.10 Total: 6.59 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -3.24 Total: -114.37 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -1.58 Total: -40.03 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -76.10 3.17 -72.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539845423.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.914 kcal (2) G-P(sol) polarization free energy of solvation -76.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds