Wall clock time and date at job start Tue Mar 31 2020 16:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46569 * 2 1 4 4 N 1.46502 * 109.47305 * 119.99383 * 2 1 3 5 5 C 1.46495 * 120.00310 * 295.25685 * 4 2 1 6 6 C 1.50698 * 109.46975 * 269.99616 * 5 4 2 7 7 H 1.07997 * 120.00131 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99752 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00494 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99850 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47231 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47102 * 120.00098 * 10 8 6 13 13 H 1.48501 * 109.47446 * 239.99954 * 10 8 6 14 14 C 1.34779 * 119.99326 * 115.25199 * 4 2 1 15 15 O 1.21588 * 119.99588 * 187.63091 * 14 4 2 16 16 N 1.34768 * 120.00344 * 7.62852 * 14 4 2 17 17 C 1.39439 * 120.00250 * 189.57960 * 16 14 4 18 18 C 1.38971 * 119.85396 * 336.03017 * 17 16 14 19 19 C 1.38265 * 120.40131 * 180.02562 * 18 17 16 20 20 C 1.38793 * 119.82993 * 0.02562 * 19 18 17 21 21 C 1.41101 * 119.92941 * 359.97438 * 20 19 18 22 22 C 1.38312 * 119.89628 * 0.02562 * 21 20 19 23 23 C 1.47858 * 105.84969 * 180.02562 * 21 20 19 24 24 O 1.21444 * 125.74266 * 180.02562 * 23 21 20 25 25 N 1.34532 * 108.51652 * 359.96600 * 23 21 20 26 26 C 1.34502 * 111.09801 * 0.03477 * 25 23 21 27 27 O 1.21490 * 125.67286 * 179.97438 * 26 25 23 28 28 H 1.09004 * 109.47224 * 299.99744 * 1 2 3 29 29 H 1.09000 * 109.47447 * 60.00456 * 1 2 3 30 30 H 1.09008 * 109.46681 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47400 * 239.99942 * 2 1 3 32 32 H 1.09000 * 109.46897 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47280 * 299.99562 * 3 2 1 34 34 H 1.09003 * 109.47562 * 60.00530 * 3 2 1 35 35 H 1.08996 * 109.47148 * 29.99965 * 5 4 2 36 36 H 1.09005 * 109.47117 * 149.99728 * 5 4 2 37 37 H 0.96996 * 120.00495 * 179.97438 * 9 8 6 38 38 H 0.97004 * 120.00554 * 9.58640 * 16 14 4 39 39 H 1.08000 * 119.79683 * 0.04116 * 18 17 16 40 40 H 1.08003 * 120.07994 * 179.72363 * 19 18 17 41 41 H 1.07989 * 120.17356 * 180.02562 * 22 21 20 42 42 H 0.97000 * 124.44781 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7522 -0.1322 2.5243 6 6 2.8725 0.7983 2.9117 7 1 3.6998 0.9582 2.2361 8 6 2.8413 1.4455 4.1287 9 7 1.8338 1.2512 4.9512 10 14 4.2296 2.5995 4.6087 11 1 5.2345 2.6462 3.5163 12 1 3.6843 3.9617 4.8376 13 1 4.8735 2.1085 5.8535 14 6 2.7125 -1.8394 1.0748 15 8 2.9978 -2.4848 2.0650 16 7 3.0902 -2.2730 -0.1440 17 6 3.6289 -3.5504 -0.2936 18 6 4.2342 -4.1771 0.7890 19 6 4.7724 -5.4434 0.6532 20 6 4.7086 -6.0930 -0.5717 21 6 4.0947 -5.4598 -1.6732 22 6 3.5586 -4.1930 -1.5293 23 6 4.1993 -6.4145 -2.7974 24 8 3.7842 -6.2319 -3.9240 25 7 4.8326 -7.5189 -2.3627 26 6 5.1642 -7.4072 -1.0639 27 8 5.7426 -8.2486 -0.4056 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 0.8122 0.4191 2.5049 36 1 1.6840 -0.9413 3.2515 37 1 1.8120 1.7062 5.8076 38 1 2.9876 -1.6964 -0.9173 39 1 4.2843 -3.6720 1.7423 40 1 5.2456 -5.9238 1.4969 41 1 3.0874 -3.7044 -2.3692 42 1 5.0247 -8.2939 -2.9134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542191884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:46 Heat of formation + Delta-G solvation = -32.250060 kcal Electronic energy + Delta-G solvation = -27901.088164 eV Core-core repulsion = 23847.858919 eV Total energy + Delta-G solvation = -4053.229245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.36854 -40.56263 -38.82242 -38.36688 -36.45595 -35.83558 -34.55594 -32.88363 -31.36787 -31.11670 -29.99319 -27.39784 -26.79979 -25.24880 -24.25438 -23.24929 -22.26376 -21.59828 -20.64790 -19.20949 -18.58960 -17.95899 -17.77847 -16.67295 -16.60752 -16.56652 -15.78919 -15.37773 -15.06588 -14.93462 -14.65317 -14.29751 -14.21445 -14.14954 -13.87517 -13.57398 -13.23845 -13.06359 -12.65796 -12.39008 -12.07397 -11.92504 -11.75554 -11.33992 -11.13739 -10.98346 -10.84997 -10.74680 -10.66289 -10.65490 -10.59308 -10.52018 -10.12057 -9.69460 -9.42045 -9.22003 -8.52506 -8.37420 -7.80857 -6.13714 -4.18262 -0.08306 0.84863 1.88215 2.35292 2.73525 2.77991 3.23147 3.31385 3.33048 3.36227 3.59768 3.69793 4.06087 4.12510 4.37359 4.44925 4.87230 4.98337 5.03147 5.20628 5.26376 5.36024 5.40236 5.50100 5.64639 5.71726 5.84729 5.89540 5.95666 6.03803 6.11032 6.22558 6.24390 6.33945 6.44438 6.62478 6.81410 6.84424 6.94833 7.21863 7.35456 7.46214 7.51695 7.82956 8.11524 8.31975 8.78589 8.94988 9.46780 10.94161 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.002930 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.041713 B = 9554.529339 C =10590.663855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.136 3.864 3 C -0.157 4.157 4 N -0.596 5.596 5 C 0.258 3.742 6 C -0.526 4.526 7 H 0.059 0.941 8 C 0.063 3.937 9 N -0.892 5.892 10 Si 0.895 3.105 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.700 3.300 15 O -0.561 6.561 16 N -0.687 5.687 17 C 0.212 3.788 18 C -0.128 4.128 19 C -0.013 4.013 20 C -0.186 4.186 21 C -0.122 4.122 22 C -0.088 4.088 23 C 0.583 3.417 24 O -0.470 6.470 25 N -0.683 5.683 26 C 0.582 3.418 27 O -0.472 6.472 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.047 0.953 37 H 0.263 0.737 38 H 0.408 0.592 39 H 0.188 0.812 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.517 -8.745 -14.977 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.031 3.969 3 C -0.215 4.215 4 N -0.330 5.330 5 C 0.139 3.861 6 C -0.565 4.565 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.531 5.531 10 Si 0.723 3.277 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.403 3.597 15 O -0.438 6.438 16 N -0.334 5.334 17 C 0.112 3.888 18 C -0.148 4.148 19 C -0.032 4.032 20 C -0.191 4.191 21 C -0.126 4.126 22 C -0.110 4.110 23 C 0.372 3.628 24 O -0.342 6.342 25 N -0.349 5.349 26 C 0.372 3.628 27 O -0.344 6.344 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.246 0.754 39 H 0.205 0.795 40 H 0.161 0.839 41 H 0.159 0.841 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 1.594 -9.254 -14.186 17.012 hybrid contribution 0.739 0.606 -0.469 1.065 sum 2.333 -8.648 -14.655 17.176 Atomic orbital electron populations 1.22168 0.95141 1.01980 1.02721 1.20966 0.94500 0.94398 0.87050 1.22145 1.01619 0.95113 1.02609 1.47795 1.53941 1.21645 1.09649 1.19281 0.96619 0.94227 0.75964 1.21464 1.06880 1.25758 1.02362 0.92268 1.24910 0.95998 0.96966 0.96101 1.69927 1.30486 1.43038 1.09661 0.86488 0.82154 0.80396 0.78636 1.19844 1.21010 1.20882 1.15911 0.79561 0.82231 0.82017 1.90725 1.60347 1.56611 1.36165 1.43048 1.64423 1.14557 1.11342 1.17756 0.92288 0.85125 0.93644 1.22533 0.95323 0.95024 1.01945 1.20769 0.94346 0.93124 0.94996 1.20321 1.07051 0.95605 0.96123 1.19991 1.02925 0.95561 0.94138 1.20251 1.00762 0.92856 0.97119 1.18313 0.75683 0.81675 0.87151 1.90835 1.44854 1.77843 1.20648 1.44437 1.56205 1.20440 1.13822 1.18317 0.76837 0.86822 0.80832 1.90844 1.37334 1.45932 1.60286 0.91122 0.92012 0.92834 0.91780 0.92424 0.93033 0.89776 0.94411 0.93518 0.92691 0.75350 0.79547 0.83893 0.84059 0.73169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.25 37.16 0.34 -1.71 16 2 C 0.14 1.88 3.21 -67.93 -0.22 1.66 16 3 C -0.16 -2.25 8.36 37.16 0.31 -1.94 16 4 N -0.60 -10.97 2.38 -173.18 -0.41 -11.38 16 5 C 0.26 6.02 4.52 -5.20 -0.02 6.00 16 6 C -0.53 -13.39 7.84 -34.44 -0.27 -13.66 16 7 H 0.06 1.51 7.54 -52.49 -0.40 1.11 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -24.87 13.29 55.43 0.74 -24.14 16 10 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.70 12.75 8.16 -86.92 -0.71 12.04 16 15 O -0.56 -12.15 12.63 5.29 0.07 -12.08 16 16 N -0.69 -9.19 5.17 -14.18 -0.07 -9.27 16 17 C 0.21 2.70 6.49 -83.67 -0.54 2.16 16 18 C -0.13 -1.75 8.87 -39.30 -0.35 -2.10 16 19 C -0.01 -0.15 10.08 -39.37 -0.40 -0.55 16 20 C -0.19 -2.15 6.40 -104.81 -0.67 -2.82 16 21 C -0.12 -1.36 6.40 -104.85 -0.67 -2.03 16 22 C -0.09 -0.94 9.98 -39.10 -0.39 -1.33 16 23 C 0.58 6.33 8.46 -12.43 -0.11 6.23 16 24 O -0.47 -6.07 18.04 5.41 0.10 -5.97 16 25 N -0.68 -6.27 5.76 -13.31 -0.08 -6.35 16 26 C 0.58 6.59 8.44 -12.58 -0.11 6.49 16 27 O -0.47 -6.47 18.04 5.37 0.10 -6.37 16 28 H 0.07 1.04 6.86 -51.93 -0.36 0.68 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.06 0.69 5.57 -51.93 -0.29 0.40 16 32 H 0.06 0.87 7.99 -51.93 -0.42 0.46 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.46 6.95 -51.93 -0.36 1.10 16 35 H 0.04 0.90 6.68 -51.93 -0.35 0.55 16 36 H 0.05 1.26 7.33 -51.93 -0.38 0.88 16 37 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.41 4.23 6.34 -40.82 -0.26 3.97 16 39 H 0.19 3.07 5.19 -52.70 -0.27 2.80 16 40 H 0.14 1.47 8.06 -52.48 -0.42 1.04 16 41 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.43 2.77 8.96 -40.82 -0.37 2.40 16 LS Contribution 356.36 15.07 5.37 5.37 Total: -1.00 -31.44 356.36 -7.80 -39.24 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.69 Total: 5.39 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: -3.90 Total: 10.00 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.17 Total: -51.13 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: 0.26 Total: -24.43 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.44 -7.80 -39.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542191884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.991 kcal (2) G-P(sol) polarization free energy of solvation -31.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds