Wall clock time and date at job start Tue Mar 31 2020 16:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31134 * 126.54903 * 2 1 4 4 C 1.34492 * 105.61140 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.28571 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.47450 * 89.99665 * 5 4 3 7 7 C 1.35706 * 117.00298 * 179.97438 * 6 5 4 8 8 C 1.38998 * 119.91127 * 359.72459 * 7 6 5 9 9 C 1.37703 * 120.08464 * 179.71929 * 8 7 6 10 10 C 1.39732 * 119.91070 * 0.58019 * 9 8 7 11 11 C 1.47607 * 120.08584 * 179.67439 * 10 9 8 12 12 O 1.21582 * 120.00114 * 180.02562 * 11 10 9 13 13 N 1.34783 * 119.99886 * 0.02562 * 11 10 9 14 14 C 1.46498 * 120.00014 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47279 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47298 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99600 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00134 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00004 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99797 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47194 * 90.00226 * 20 18 16 22 22 H 1.48505 * 109.46630 * 209.99752 * 20 18 16 23 23 H 1.48496 * 109.47286 * 329.99567 * 20 18 16 24 24 C 1.39731 * 119.82961 * 359.69909 * 10 9 8 25 25 C 1.37706 * 119.90793 * 359.97438 * 24 10 9 26 26 N 1.29945 * 107.42860 * 359.97438 * 4 3 2 27 27 O 1.21304 * 110.24811 * 359.71096 * 26 4 3 28 28 H 1.09001 * 109.46953 * 90.00244 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99842 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00473 * 1 2 3 31 31 H 1.09001 * 109.47278 * 209.99816 * 5 4 3 32 32 H 1.08997 * 109.46942 * 329.99496 * 5 4 3 33 33 H 1.07992 * 119.95487 * 0.02562 * 8 7 6 34 34 H 1.08002 * 120.03874 * 180.27713 * 9 8 7 35 35 H 0.96995 * 119.99737 * 359.97438 * 13 11 10 36 36 H 1.09003 * 109.46973 * 299.99587 * 14 13 11 37 37 H 1.08998 * 109.47126 * 59.99412 * 14 13 11 38 38 H 1.08994 * 109.47277 * 299.99835 * 15 14 13 39 39 H 1.09005 * 109.46980 * 59.99566 * 15 14 13 40 40 H 0.97000 * 120.00093 * 180.02562 * 19 18 16 41 41 H 1.07992 * 120.04637 * 179.97438 * 24 10 9 42 42 H 1.07999 * 119.95275 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2880 1.0535 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8112 1.3887 0.0003 6 8 5.2114 1.6476 1.3474 7 6 6.3428 2.3756 1.5249 8 6 7.0570 2.8269 0.4211 9 6 8.2023 3.5708 0.5971 10 6 8.6530 3.8615 1.8874 11 6 9.8842 4.6525 2.0805 12 8 10.2752 4.9041 3.2039 13 7 10.5750 5.0958 1.0114 14 6 11.7966 5.8813 1.2030 15 6 12.3814 6.2555 -0.1603 16 6 13.6378 7.0641 0.0368 17 1 13.9846 7.2883 1.0347 18 6 14.3449 7.5168 -1.0567 19 7 15.4416 8.2220 -0.8847 20 14 13.7453 7.1285 -2.7828 21 1 12.8294 8.2033 -3.2422 22 1 14.9078 7.0420 -3.7028 23 1 13.0222 5.8315 -2.7755 24 6 7.9355 3.4010 2.9945 25 6 6.7873 2.6634 2.8101 26 7 3.4646 -0.7242 0.0015 27 8 2.3029 -1.0735 0.0072 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 5.5986 0.8367 -0.5130 32 1 4.6349 2.3332 -0.5143 33 1 6.7104 2.5981 -0.5757 34 1 8.7542 3.9249 -0.2611 35 1 10.2632 4.8947 0.1152 36 1 11.5616 6.7887 1.7594 37 1 12.5241 5.2915 1.7606 38 1 12.6165 5.3480 -0.7163 39 1 11.6540 6.8452 -0.7182 40 1 15.9389 8.5409 -1.6541 41 1 8.2808 3.6232 3.9933 42 1 6.2319 2.3075 3.6653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543154859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:32 Heat of formation + Delta-G solvation = 21.385840 kcal Electronic energy + Delta-G solvation = -25834.706354 eV Core-core repulsion = 21783.802937 eV Total energy + Delta-G solvation = -4050.903417 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.24027 -40.72693 -39.44113 -37.47605 -36.42596 -35.05290 -34.28543 -32.89348 -31.59364 -30.86460 -30.00157 -29.51432 -28.57643 -25.21423 -24.35247 -23.42481 -23.05942 -21.81654 -20.83400 -20.30093 -19.09581 -18.51400 -18.17652 -17.45263 -16.96602 -16.62992 -16.36930 -15.40557 -15.25419 -15.07144 -14.99541 -14.43199 -14.21221 -14.11579 -14.00469 -13.82064 -13.57548 -13.48243 -13.15682 -12.95674 -12.65385 -12.63325 -12.48500 -12.23987 -11.72926 -11.52512 -11.46271 -11.21728 -11.19915 -10.56411 -10.41500 -10.31272 -9.98455 -9.60520 -9.36291 -9.32643 -8.73481 -8.62656 -8.43351 -6.12013 -4.12221 0.49391 0.73030 1.05201 1.36215 2.19507 2.54978 2.89974 3.16489 3.23895 3.31365 3.32556 3.39799 3.54285 3.78965 4.16011 4.31868 4.36435 4.48534 4.51278 4.54414 4.61058 4.75492 4.84686 4.90424 4.97478 5.12923 5.18141 5.20812 5.32482 5.33766 5.65685 5.79896 5.93912 6.05683 6.19316 6.22947 6.33689 6.54264 6.71296 6.86469 7.11656 7.21253 7.52199 7.65111 7.86266 8.42118 8.52344 8.92441 9.47961 11.01023 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.020064 B = 0.001782 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.218609 B =15708.582880 C =16833.344302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.182 3.818 3 N -0.470 5.470 4 C 0.167 3.833 5 C 0.154 3.846 6 O -0.307 6.307 7 C 0.149 3.851 8 C -0.216 4.216 9 C -0.044 4.044 10 C -0.162 4.162 11 C 0.552 3.448 12 O -0.544 6.544 13 N -0.721 5.721 14 C 0.129 3.871 15 C -0.023 4.023 16 C -0.523 4.523 17 H 0.076 0.924 18 C 0.070 3.930 19 N -0.898 5.898 20 Si 0.882 3.118 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 C -0.020 4.020 25 C -0.155 4.155 26 N -0.359 5.359 27 O 0.088 5.912 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.101 0.899 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.394 0.606 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.022 0.978 39 H 0.018 0.982 40 H 0.265 0.735 41 H 0.146 0.854 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.893 -18.882 -0.672 37.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.038 4.038 3 N -0.204 5.204 4 C -0.105 4.105 5 C 0.077 3.923 6 O -0.219 6.219 7 C 0.103 3.897 8 C -0.234 4.234 9 C -0.063 4.063 10 C -0.165 4.165 11 C 0.339 3.661 12 O -0.423 6.423 13 N -0.371 5.371 14 C 0.008 3.992 15 C -0.060 4.060 16 C -0.562 4.562 17 H 0.094 0.906 18 C -0.132 4.132 19 N -0.536 5.536 20 Si 0.709 3.291 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 C -0.039 4.039 25 C -0.174 4.174 26 N -0.065 5.065 27 O 0.024 5.976 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.229 0.771 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.040 0.960 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.164 0.836 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -31.706 -18.720 0.173 36.821 hybrid contribution -0.407 -0.209 -1.716 1.776 sum -32.114 -18.929 -1.543 37.309 Atomic orbital electron populations 1.20463 0.79729 1.06242 1.05712 1.28933 0.99081 0.80345 0.95460 1.71908 0.99928 1.28914 1.19697 1.25122 0.94528 0.88105 1.02790 1.20610 0.89278 0.98637 0.83743 1.86016 1.40144 1.68525 1.27253 1.19145 0.85087 0.90925 0.94522 1.21139 0.98847 1.05415 0.98024 1.21159 0.94430 0.94164 0.96529 1.20065 0.98183 1.04332 0.93944 1.18125 0.83292 0.79609 0.85088 1.90764 1.69586 1.58377 1.23611 1.46258 1.27685 1.54809 1.08395 1.21549 0.83306 0.94172 1.00223 1.19804 0.97014 0.97051 0.92166 1.20915 1.06758 1.33070 0.95408 0.90564 1.24996 0.94622 0.94454 0.99172 1.69901 1.16478 1.36331 1.30889 0.86758 0.78539 0.79273 0.84540 1.20213 1.21252 1.19116 1.21118 0.91472 0.91845 0.99466 1.20385 0.98622 1.03687 0.94688 1.74695 0.97612 1.15426 1.18762 1.85329 1.11294 1.35856 1.65129 0.87728 0.88117 0.87444 0.88593 0.88117 0.84848 0.84889 0.77132 0.91736 0.91726 0.95985 0.96417 0.92540 0.83644 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.04 10.51 36.01 0.38 0.34 16 2 C 0.18 1.09 8.51 -13.05 -0.11 0.98 16 3 N -0.47 -4.19 11.55 -9.87 -0.11 -4.30 16 4 C 0.17 1.59 7.85 -156.38 -1.23 0.37 16 5 C 0.15 1.25 5.36 36.00 0.19 1.44 16 6 O -0.31 -3.21 10.11 -18.82 -0.19 -3.40 16 7 C 0.15 1.56 6.70 -39.02 -0.26 1.30 16 8 C -0.22 -2.04 9.01 -39.50 -0.36 -2.39 16 9 C -0.04 -0.47 9.53 -39.22 -0.37 -0.85 16 10 C -0.16 -2.17 5.87 -104.96 -0.62 -2.79 16 11 C 0.55 9.39 7.76 -12.43 -0.10 9.30 16 12 O -0.54 -11.20 16.34 5.29 0.09 -11.11 16 13 N -0.72 -12.08 5.51 -61.33 -0.34 -12.42 16 14 C 0.13 2.66 5.61 -4.05 -0.02 2.63 16 15 C -0.02 -0.52 4.16 -27.88 -0.12 -0.63 16 16 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 17 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 18 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 19 N -0.90 -27.28 13.96 55.43 0.77 -26.51 16 20 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 24 C -0.02 -0.25 9.58 -39.22 -0.38 -0.62 16 25 C -0.16 -1.67 9.97 -39.49 -0.39 -2.06 16 26 N -0.36 -3.56 12.16 30.90 0.38 -3.18 16 27 O 0.09 0.67 11.31 18.11 0.20 0.88 16 28 H 0.10 -0.09 8.14 -51.93 -0.42 -0.52 16 29 H 0.10 -0.13 8.14 -51.93 -0.42 -0.55 16 30 H 0.11 0.03 8.14 -51.93 -0.42 -0.40 16 31 H 0.10 0.62 7.64 -51.93 -0.40 0.23 16 32 H 0.10 0.65 7.66 -51.93 -0.40 0.25 16 33 H 0.13 0.89 6.28 -52.49 -0.33 0.56 16 34 H 0.13 1.19 6.40 -52.49 -0.34 0.85 16 35 H 0.39 5.44 6.49 -40.82 -0.27 5.17 16 36 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 39 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.15 1.75 7.64 -52.49 -0.40 1.35 16 42 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 366.65 15.07 5.53 5.53 Total: -1.00 -36.29 366.65 -7.17 -43.46 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.02 Total: 0.86 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -3.81 Total: -6.07 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.70 Total: -46.41 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: 0.10 Total: -13.63 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.29 -7.17 -43.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543154859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.842 kcal (2) G-P(sol) polarization free energy of solvation -36.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds