Wall clock time and date at job start Tue Mar 31 2020 16:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31134 * 126.54903 * 2 1 4 4 C 1.34492 * 105.61140 * 179.97438 * 3 2 1 5 5 C 1.50699 * 126.28571 * 179.97438 * 4 3 2 6 6 O 1.42897 * 109.47450 * 89.99665 * 5 4 3 7 7 C 1.35706 * 117.00298 * 179.97438 * 6 5 4 8 8 C 1.38998 * 119.91127 * 359.72459 * 7 6 5 9 9 C 1.37703 * 120.08464 * 179.71929 * 8 7 6 10 10 C 1.39732 * 119.91070 * 0.58019 * 9 8 7 11 11 C 1.47607 * 120.08584 * 179.67439 * 10 9 8 12 12 O 1.21582 * 120.00114 * 180.02562 * 11 10 9 13 13 N 1.34783 * 119.99886 * 0.02562 * 11 10 9 14 14 C 1.46498 * 120.00014 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47279 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47298 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99600 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00134 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00004 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99797 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47194 * 90.00226 * 20 18 16 22 22 H 1.48505 * 109.46630 * 209.99752 * 20 18 16 23 23 H 1.48496 * 109.47286 * 329.99567 * 20 18 16 24 24 C 1.39731 * 119.82961 * 359.69909 * 10 9 8 25 25 C 1.37706 * 119.90793 * 359.97438 * 24 10 9 26 26 N 1.29945 * 107.42860 * 359.97438 * 4 3 2 27 27 O 1.21304 * 110.24811 * 359.71096 * 26 4 3 28 28 H 1.09001 * 109.46953 * 90.00244 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99842 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00473 * 1 2 3 31 31 H 1.09001 * 109.47278 * 209.99816 * 5 4 3 32 32 H 1.08997 * 109.46942 * 329.99496 * 5 4 3 33 33 H 1.07992 * 119.95487 * 0.02562 * 8 7 6 34 34 H 1.08002 * 120.03874 * 180.27713 * 9 8 7 35 35 H 0.96995 * 119.99737 * 359.97438 * 13 11 10 36 36 H 1.09003 * 109.46973 * 299.99587 * 14 13 11 37 37 H 1.08998 * 109.47126 * 59.99412 * 14 13 11 38 38 H 1.08994 * 109.47277 * 299.99835 * 15 14 13 39 39 H 1.09005 * 109.46980 * 59.99566 * 15 14 13 40 40 H 0.97000 * 120.00093 * 180.02562 * 19 18 16 41 41 H 1.07992 * 120.04637 * 179.97438 * 24 10 9 42 42 H 1.07999 * 119.95275 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2880 1.0535 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8112 1.3887 0.0003 6 8 5.2114 1.6476 1.3474 7 6 6.3428 2.3756 1.5249 8 6 7.0570 2.8269 0.4211 9 6 8.2023 3.5708 0.5971 10 6 8.6530 3.8615 1.8874 11 6 9.8842 4.6525 2.0805 12 8 10.2752 4.9041 3.2039 13 7 10.5750 5.0958 1.0114 14 6 11.7966 5.8813 1.2030 15 6 12.3814 6.2555 -0.1603 16 6 13.6378 7.0641 0.0368 17 1 13.9846 7.2883 1.0347 18 6 14.3449 7.5168 -1.0567 19 7 15.4416 8.2220 -0.8847 20 14 13.7453 7.1285 -2.7828 21 1 12.8294 8.2033 -3.2422 22 1 14.9078 7.0420 -3.7028 23 1 13.0222 5.8315 -2.7755 24 6 7.9355 3.4010 2.9945 25 6 6.7873 2.6634 2.8101 26 7 3.4646 -0.7242 0.0015 27 8 2.3029 -1.0735 0.0072 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 5.5986 0.8367 -0.5130 32 1 4.6349 2.3332 -0.5143 33 1 6.7104 2.5981 -0.5757 34 1 8.7542 3.9249 -0.2611 35 1 10.2632 4.8947 0.1152 36 1 11.5616 6.7887 1.7594 37 1 12.5241 5.2915 1.7606 38 1 12.6165 5.3480 -0.7163 39 1 11.6540 6.8452 -0.7182 40 1 15.9389 8.5409 -1.6541 41 1 8.2808 3.6232 3.9933 42 1 6.2319 2.3075 3.6653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543154859.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:32 Heat of formation + Delta-G solvation = -5.986231 kcal Electronic energy + Delta-G solvation = -25835.893296 eV Core-core repulsion = 21783.802937 eV Total energy + Delta-G solvation = -4052.090359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.80650 -41.60960 -40.62186 -38.39758 -37.02068 -36.68925 -34.86405 -34.73482 -32.73922 -31.96855 -31.20719 -29.94485 -29.28884 -26.93576 -24.98821 -24.47572 -23.85565 -22.73813 -22.33362 -21.53179 -19.79543 -19.23324 -19.01786 -18.75392 -18.56310 -17.49789 -17.05917 -16.58284 -16.51439 -16.21814 -16.03966 -15.67321 -15.31201 -15.06385 -15.00819 -14.65718 -14.42421 -14.25466 -14.19327 -13.90036 -13.71532 -13.42467 -13.34844 -13.07621 -13.01471 -12.81170 -12.38002 -12.23204 -12.18420 -12.11041 -11.97715 -11.75832 -11.52179 -11.08230 -11.02677 -10.78588 -10.18086 -10.14821 -9.40406 -8.29628 -6.37237 -0.21339 -0.02890 0.24231 0.79774 1.39361 1.42390 1.53450 1.77979 1.78473 1.96740 2.19752 2.37341 2.64531 2.76676 2.85230 3.05456 3.56365 3.72033 3.75626 3.79542 3.93188 4.11770 4.17965 4.30900 4.34041 4.41767 4.44387 4.49674 4.59046 4.66292 4.73853 4.87847 4.89897 4.97034 5.08704 5.13573 5.14348 5.29931 5.39141 5.40373 5.50050 5.63389 6.10968 6.22138 6.56102 6.70961 6.99224 7.20591 7.27411 8.87166 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.020064 B = 0.001782 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.218609 B =15708.582880 C =16833.344302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.195 3.805 3 N -0.502 5.502 4 C 0.154 3.846 5 C 0.148 3.852 6 O -0.320 6.320 7 C 0.153 3.847 8 C -0.207 4.207 9 C -0.036 4.036 10 C -0.184 4.184 11 C 0.552 3.448 12 O -0.590 6.590 13 N -0.711 5.711 14 C 0.144 3.856 15 C -0.013 4.013 16 C -0.541 4.541 17 H 0.028 0.972 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.959 3.041 21 H -0.264 1.264 22 H -0.287 1.287 23 H -0.235 1.235 24 C -0.027 4.027 25 C -0.159 4.159 26 N -0.385 5.385 27 O 0.083 5.917 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.168 0.832 34 H 0.156 0.844 35 H 0.412 0.588 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.268 0.732 41 H 0.137 0.863 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.386 -20.690 -3.617 42.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.024 4.024 3 N -0.237 5.237 4 C -0.118 4.118 5 C 0.072 3.928 6 O -0.232 6.232 7 C 0.107 3.893 8 C -0.225 4.225 9 C -0.055 4.055 10 C -0.187 4.187 11 C 0.341 3.659 12 O -0.472 6.472 13 N -0.362 5.362 14 C 0.020 3.980 15 C -0.051 4.051 16 C -0.579 4.579 17 H 0.046 0.954 18 C -0.193 4.193 19 N -0.591 5.591 20 Si 0.781 3.219 21 H -0.189 1.189 22 H -0.213 1.213 23 H -0.157 1.157 24 C -0.046 4.046 25 C -0.178 4.178 26 N -0.093 5.093 27 O 0.021 5.979 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.186 0.814 34 H 0.174 0.826 35 H 0.250 0.750 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.155 0.845 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -35.256 -20.555 -2.784 40.905 hybrid contribution 0.548 0.306 -0.705 0.944 sum -34.708 -20.248 -3.489 40.334 Atomic orbital electron populations 1.20839 0.76101 1.07691 1.07471 1.29931 1.00551 0.79231 0.92712 1.71923 1.00138 1.30102 1.21491 1.25430 0.95303 0.88248 1.02842 1.20903 0.89417 0.99709 0.82761 1.85998 1.39922 1.68269 1.29008 1.19271 0.85038 0.90250 0.94699 1.21453 0.97771 1.03998 0.99292 1.21370 0.94737 0.93552 0.95828 1.19809 0.97312 1.05884 0.95717 1.18686 0.83961 0.79019 0.84192 1.90738 1.70968 1.60164 1.25379 1.45959 1.26401 1.54297 1.09574 1.21078 0.84486 0.93676 0.98766 1.19661 0.94993 0.96961 0.93446 1.21255 1.09051 1.34000 0.93605 0.95372 1.26092 0.94524 0.93981 1.04716 1.70078 1.18352 1.38018 1.32614 0.85539 0.78292 0.80724 0.77330 1.18917 1.21340 1.15741 1.21086 0.92083 0.92394 0.99023 1.20473 0.98168 1.03425 0.95735 1.74670 0.98775 1.15879 1.20010 1.85291 1.11011 1.36325 1.65294 0.85532 0.85794 0.86737 0.86865 0.86254 0.81433 0.82641 0.74974 0.93612 0.93653 0.94300 0.94413 0.92344 0.84541 0.83349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.10 10.51 71.24 0.75 0.85 16 2 C 0.19 1.97 8.51 88.38 0.75 2.72 16 3 N -0.50 -8.14 11.55 -303.20 -3.50 -11.65 16 4 C 0.15 2.70 7.85 138.46 1.09 3.79 16 5 C 0.15 2.02 5.36 71.24 0.38 2.40 16 6 O -0.32 -5.96 10.11 -90.27 -0.91 -6.87 16 7 C 0.15 2.84 6.70 22.64 0.15 2.99 16 8 C -0.21 -3.15 9.01 22.33 0.20 -2.94 16 9 C -0.04 -0.67 9.53 22.50 0.21 -0.45 16 10 C -0.18 -4.73 5.87 -20.08 -0.12 -4.85 16 11 C 0.55 18.74 7.76 86.72 0.67 19.42 16 12 O -0.59 -25.18 16.34 -3.97 -0.06 -25.25 16 13 N -0.71 -22.99 5.51 -466.20 -2.57 -25.56 16 14 C 0.14 5.95 5.61 86.38 0.48 6.44 16 15 C -0.01 -0.57 4.16 29.85 0.12 -0.45 16 16 C -0.54 -30.95 9.66 25.60 0.25 -30.70 16 17 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 18 C 0.00 0.23 5.47 84.65 0.46 0.69 16 19 N -0.95 -59.36 13.96 21.45 0.30 -59.06 16 20 Si 0.96 41.90 27.47 68.60 1.88 43.79 16 21 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 22 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.23 -8.99 6.54 99.48 0.65 -8.34 16 24 C -0.03 -0.65 9.58 22.50 0.22 -0.43 16 25 C -0.16 -3.23 9.97 22.33 0.22 -3.01 16 26 N -0.39 -7.21 12.16 -60.33 -0.73 -7.95 16 27 O 0.08 1.18 11.31 74.86 0.85 2.02 16 28 H 0.13 -0.66 8.14 -2.39 -0.02 -0.68 16 29 H 0.12 -0.72 8.14 -2.39 -0.02 -0.74 16 30 H 0.11 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.11 1.11 7.64 -2.39 -0.02 1.10 16 32 H 0.12 1.14 7.66 -2.39 -0.02 1.12 16 33 H 0.17 1.38 6.28 -2.91 -0.02 1.36 16 34 H 0.16 2.09 6.40 -2.91 -0.02 2.07 16 35 H 0.41 10.13 6.49 -92.71 -0.60 9.53 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.04 1.61 7.20 -2.39 -0.02 1.59 16 39 H 0.04 1.54 7.57 -2.38 -0.02 1.52 16 40 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.14 3.45 7.64 -2.91 -0.02 3.42 16 42 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -82.93 366.65 1.52 -81.42 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.42 Total: 12.64 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 5.85 Total: -3.54 kcal Atomic # 7 Polarization: -97.71 SS G_CDS: -6.50 Total: -104.21 kcal Atomic # 8 Polarization: -29.96 SS G_CDS: -0.13 Total: -30.09 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.88 Total: 43.79 kcal Total: -82.93 1.52 -81.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543154859.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.429 kcal (2) G-P(sol) polarization free energy of solvation -82.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds