Wall clock time and date at job start Tue Mar 31 2020 16:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33227 * 126.02481 * 2 1 4 4 C 1.31536 * 109.76969 * 180.13367 * 3 2 1 5 5 O 1.35206 * 125.49419 * 179.82528 * 4 3 2 6 6 N 1.34956 * 109.01301 * 359.56637 * 4 3 2 7 7 H 0.96998 * 126.54242 * 180.24454 * 6 4 3 8 8 C 1.36745 * 126.02196 * 179.65280 * 2 1 3 9 9 C 1.46350 * 126.82357 * 0.03450 * 8 2 1 10 10 O 1.21746 * 119.99977 * 359.97438 * 9 8 2 11 11 N 1.34779 * 119.99676 * 179.97438 * 9 8 2 12 12 C 1.39835 * 119.99696 * 174.72327 * 11 9 8 13 13 C 1.38950 * 120.04438 * 146.36278 * 12 11 9 14 14 C 1.38116 * 120.03639 * 179.69987 * 13 12 11 15 15 C 1.38214 * 120.12883 * 0.60160 * 14 13 12 16 16 C 1.38768 * 120.08531 * 359.67670 * 15 14 13 17 17 O 1.35899 * 120.01900 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99754 * 0.02721 * 17 16 15 19 19 C 1.53003 * 109.46956 * 180.02562 * 18 17 16 20 20 C 1.50703 * 109.47078 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99822 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00179 * 179.97438 * 20 19 18 23 23 N 1.31522 * 119.99722 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00235 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46985 * 90.00299 * 24 22 20 26 26 H 1.48500 * 109.47410 * 210.00361 * 24 22 20 27 27 H 1.48506 * 109.47074 * 330.00404 * 24 22 20 28 28 C 1.38613 * 119.96485 * 0.02562 * 16 15 14 29 29 H 1.08988 * 109.47553 * 270.34881 * 1 2 3 30 30 H 1.08999 * 109.46924 * 30.35182 * 1 2 3 31 31 H 1.09004 * 109.47158 * 150.34292 * 1 2 3 32 32 H 0.96693 * 113.99900 * 269.70162 * 5 4 3 33 33 H 0.96994 * 120.00525 * 354.72751 * 11 9 8 34 34 H 1.07999 * 119.98171 * 359.97438 * 13 12 11 35 35 H 1.08004 * 119.93697 * 180.30501 * 14 13 12 36 36 H 1.07998 * 119.95452 * 179.70552 * 15 14 13 37 37 H 1.08998 * 109.46731 * 299.99237 * 18 17 16 38 38 H 1.08996 * 109.47756 * 59.99657 * 18 17 16 39 39 H 1.09002 * 109.47081 * 299.99447 * 19 18 17 40 40 H 1.08996 * 109.47454 * 59.99122 * 19 18 17 41 41 H 0.96994 * 119.99600 * 179.97438 * 23 22 20 42 42 H 1.08003 * 120.06474 * 180.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2905 1.0775 0.0000 4 6 3.5533 0.7093 -0.0029 5 8 4.6150 1.5464 -0.0071 6 7 3.6182 -0.6387 0.0048 7 1 4.4244 -1.1780 0.0081 8 6 2.3111 -1.1060 0.0067 9 6 1.8795 -2.5043 0.0145 10 8 0.6925 -2.7750 0.0159 11 7 2.7960 -3.4925 0.0200 12 6 2.3874 -4.8245 0.1388 13 6 3.0945 -5.8296 -0.5096 14 6 2.6943 -7.1458 -0.3872 15 6 1.5831 -7.4655 0.3699 16 6 0.8697 -6.4653 1.0151 17 8 -0.2231 -6.7811 1.7587 18 6 -0.5799 -8.1629 1.8331 19 6 -1.8259 -8.3216 2.7068 20 6 -2.2025 -9.7787 2.7847 21 1 -1.6125 -10.5176 2.2629 22 6 -3.3004 -10.1685 3.5221 23 7 -4.0192 -9.2686 4.1571 24 14 -3.7677 -11.9745 3.6181 25 1 -3.0790 -12.6032 4.7739 26 1 -5.2374 -12.0971 3.7912 27 1 -3.3580 -12.6591 2.3656 28 6 1.2715 -5.1437 0.8997 29 1 -0.3634 0.0063 1.0275 30 1 -0.3633 0.8868 -0.5193 31 1 -0.3634 -0.8931 -0.5085 32 1 4.9243 1.7849 -0.8916 33 1 3.7391 -3.2797 -0.0583 34 1 3.9601 -5.5819 -1.1061 35 1 3.2481 -7.9263 -0.8879 36 1 1.2699 -8.4952 0.4599 37 1 -0.7888 -8.5386 0.8314 38 1 0.2441 -8.7281 2.2686 39 1 -1.6175 -7.9458 3.7085 40 1 -2.6497 -7.7565 2.2709 41 1 -4.7917 -9.5428 4.6756 42 1 0.7177 -4.3640 1.4015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573575585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:25 Heat of formation + Delta-G solvation = -28.847467 kcal Electronic energy + Delta-G solvation = -26615.320204 eV Core-core repulsion = 22562.238507 eV Total energy + Delta-G solvation = -4053.081697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.78909 -40.59835 -39.25883 -38.00867 -37.18854 -34.97109 -33.63395 -33.33768 -31.32671 -30.86992 -29.71039 -29.12475 -27.34236 -25.08176 -23.94318 -22.90323 -22.32321 -21.63597 -20.54362 -20.30048 -19.89248 -18.53439 -18.14364 -16.87893 -16.51991 -16.16512 -16.12156 -15.65834 -15.48860 -15.29597 -15.09757 -14.69693 -14.46475 -14.18349 -13.61208 -13.43746 -13.07046 -12.95305 -12.81421 -12.77707 -12.40078 -12.31616 -11.85564 -11.74234 -11.47787 -10.94561 -10.89911 -10.75788 -10.58371 -10.56221 -10.46680 -10.08370 -9.84754 -9.64862 -9.28873 -8.92832 -8.44649 -8.33067 -7.88795 -6.08827 -4.13642 0.58071 1.36511 1.57066 1.82640 2.19309 2.57288 2.86647 3.28150 3.28649 3.34101 3.36887 3.79597 3.90377 4.20938 4.41047 4.47164 4.68082 4.92355 5.01458 5.08995 5.27405 5.30045 5.34784 5.56880 5.59777 5.63660 5.65850 5.77515 6.00373 6.03817 6.04817 6.16802 6.17891 6.26936 6.45951 6.55659 6.71494 6.88503 6.91511 7.03636 7.30703 7.51822 7.66002 7.70408 7.81476 8.05932 8.24837 8.91945 9.50495 11.02712 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.020691 B = 0.002057 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.906367 B =13605.590044 C =14696.889150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.126 3.874 3 N -0.487 5.487 4 C 0.417 3.583 5 O -0.440 6.440 6 N -0.557 5.557 7 H 0.422 0.578 8 C -0.088 4.088 9 C 0.594 3.406 10 O -0.487 6.487 11 N -0.671 5.671 12 C 0.176 3.824 13 C -0.195 4.195 14 C -0.060 4.060 15 C -0.223 4.223 16 C 0.166 3.834 17 O -0.311 6.311 18 C 0.065 3.935 19 C 0.025 3.975 20 C -0.526 4.526 21 H 0.058 0.942 22 C 0.060 3.940 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.279 1.279 26 H -0.285 1.285 27 H -0.273 1.273 28 C -0.161 4.161 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.409 0.591 33 H 0.403 0.597 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.028 0.972 40 H 0.029 0.971 41 H 0.263 0.737 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.093 17.575 -12.613 30.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.009 4.009 3 N -0.218 5.218 4 C 0.116 3.884 5 O -0.242 6.242 6 N -0.177 5.177 7 H 0.261 0.739 8 C -0.202 4.202 9 C 0.382 3.618 10 O -0.359 6.359 11 N -0.315 5.315 12 C 0.083 3.917 13 C -0.216 4.216 14 C -0.079 4.079 15 C -0.242 4.242 16 C 0.118 3.882 17 O -0.223 6.223 18 C -0.009 4.009 19 C -0.013 4.013 20 C -0.565 4.565 21 H 0.076 0.924 22 C -0.143 4.143 23 N -0.527 5.527 24 Si 0.727 3.273 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.198 1.198 28 C -0.182 4.182 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.267 0.733 33 H 0.238 0.762 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.151 0.849 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 19.660 18.427 -11.760 29.400 hybrid contribution 1.459 -1.982 -0.491 2.510 sum 21.119 16.446 -12.251 29.437 Atomic orbital electron populations 1.20433 0.85498 1.04311 1.03917 1.21052 0.97092 0.85637 0.97115 1.70348 0.98528 1.30261 1.22668 1.20200 0.87491 0.78581 1.02149 1.84849 1.43227 1.61527 1.34552 1.43686 1.08635 1.07976 1.57359 0.73909 1.20646 0.83108 0.94761 1.21678 1.16719 0.85971 0.82327 0.76811 1.90953 1.15456 1.82217 1.47307 1.43251 1.09838 1.04808 1.73645 1.17192 0.95969 0.82234 0.96334 1.20591 1.03648 0.92576 1.04740 1.20662 0.95284 0.95408 0.96566 1.21419 0.99095 0.99889 1.03836 1.18940 0.86837 0.92740 0.89675 1.86204 1.40766 1.30912 1.64469 1.23370 0.99898 0.76762 1.00903 1.19134 0.89982 0.97424 0.94720 1.20961 1.12278 0.91742 1.31481 0.92361 1.24999 0.96093 0.97913 0.95247 1.69981 1.17750 1.33313 1.31611 0.86482 0.77703 0.84670 0.78488 1.20531 1.21047 1.19775 1.20271 0.99495 0.95085 1.03339 0.89889 0.90544 0.88615 0.73317 0.76234 0.86184 0.85600 0.84912 0.92981 0.93026 0.95372 0.95280 0.92695 0.84057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.87 36.00 0.36 -0.49 16 2 C 0.13 1.37 7.14 -82.53 -0.59 0.78 16 3 N -0.49 -5.27 11.22 -10.82 -0.12 -5.40 16 4 C 0.42 3.29 9.43 -89.58 -0.84 2.44 16 5 O -0.44 -2.26 13.62 -17.31 -0.24 -2.49 16 6 N -0.56 -3.49 6.12 -10.91 -0.07 -3.56 16 7 H 0.42 1.07 8.33 -40.82 -0.34 0.73 16 8 C -0.09 -0.85 7.07 -81.98 -0.58 -1.43 16 9 C 0.59 6.83 7.51 -13.00 -0.10 6.74 16 10 O -0.49 -7.39 12.48 5.15 0.06 -7.33 16 11 N -0.67 -6.36 5.33 -11.15 -0.06 -6.42 16 12 C 0.18 2.23 6.28 -83.74 -0.53 1.71 16 13 C -0.20 -2.14 9.96 -39.36 -0.39 -2.53 16 14 C -0.06 -0.73 10.03 -39.63 -0.40 -1.12 16 15 C -0.22 -3.38 9.04 -39.39 -0.36 -3.73 16 16 C 0.17 2.96 6.68 -39.25 -0.26 2.69 16 17 O -0.31 -6.57 10.13 -19.42 -0.20 -6.77 16 18 C 0.06 1.39 4.68 37.16 0.17 1.57 16 19 C 0.02 0.65 5.34 -27.88 -0.15 0.50 16 20 C -0.53 -14.72 9.11 -34.44 -0.31 -15.03 16 21 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 22 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 24 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 28 C -0.16 -2.62 8.59 -39.24 -0.34 -2.96 16 29 H 0.08 0.81 8.14 -51.94 -0.42 0.39 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.10 1.05 6.46 -51.93 -0.34 0.71 16 32 H 0.41 -0.15 9.06 45.56 0.41 0.26 16 33 H 0.40 2.14 8.07 -40.82 -0.33 1.81 16 34 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.13 1.15 8.06 -52.48 -0.42 0.72 16 36 H 0.13 1.96 6.29 -52.49 -0.33 1.63 16 37 H 0.05 1.06 7.66 -51.93 -0.40 0.67 16 38 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.14 2.49 6.41 -52.48 -0.34 2.15 16 LS Contribution 363.93 15.07 5.48 5.48 Total: -1.00 -36.26 363.93 -7.96 -44.22 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -4.13 Total: 1.11 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -4.41 Total: -9.27 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.49 Total: -41.26 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.37 Total: -16.59 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.26 -7.96 -44.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573575585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.373 kcal (2) G-P(sol) polarization free energy of solvation -36.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds