Wall clock time and date at job start Tue Mar 31 2020 16:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.33227 * 126.02481 * 2 1 4 4 C 1.31536 * 109.76969 * 180.13367 * 3 2 1 5 5 O 1.35206 * 125.49419 * 179.82528 * 4 3 2 6 6 N 1.34956 * 109.01301 * 359.56637 * 4 3 2 7 7 H 0.96998 * 126.54242 * 180.24454 * 6 4 3 8 8 C 1.36745 * 126.02196 * 179.65280 * 2 1 3 9 9 C 1.46350 * 126.82357 * 0.03450 * 8 2 1 10 10 O 1.21746 * 119.99977 * 359.97438 * 9 8 2 11 11 N 1.34779 * 119.99676 * 179.97438 * 9 8 2 12 12 C 1.39835 * 119.99696 * 174.72327 * 11 9 8 13 13 C 1.38950 * 120.04438 * 146.36278 * 12 11 9 14 14 C 1.38116 * 120.03639 * 179.69987 * 13 12 11 15 15 C 1.38214 * 120.12883 * 0.60160 * 14 13 12 16 16 C 1.38768 * 120.08531 * 359.67670 * 15 14 13 17 17 O 1.35899 * 120.01900 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99754 * 0.02721 * 17 16 15 19 19 C 1.53003 * 109.46956 * 180.02562 * 18 17 16 20 20 C 1.50703 * 109.47078 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99822 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00179 * 179.97438 * 20 19 18 23 23 N 1.31522 * 119.99722 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00235 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46985 * 90.00299 * 24 22 20 26 26 H 1.48500 * 109.47410 * 210.00361 * 24 22 20 27 27 H 1.48506 * 109.47074 * 330.00404 * 24 22 20 28 28 C 1.38613 * 119.96485 * 0.02562 * 16 15 14 29 29 H 1.08988 * 109.47553 * 270.34881 * 1 2 3 30 30 H 1.08999 * 109.46924 * 30.35182 * 1 2 3 31 31 H 1.09004 * 109.47158 * 150.34292 * 1 2 3 32 32 H 0.96693 * 113.99900 * 269.70162 * 5 4 3 33 33 H 0.96994 * 120.00525 * 354.72751 * 11 9 8 34 34 H 1.07999 * 119.98171 * 359.97438 * 13 12 11 35 35 H 1.08004 * 119.93697 * 180.30501 * 14 13 12 36 36 H 1.07998 * 119.95452 * 179.70552 * 15 14 13 37 37 H 1.08998 * 109.46731 * 299.99237 * 18 17 16 38 38 H 1.08996 * 109.47756 * 59.99657 * 18 17 16 39 39 H 1.09002 * 109.47081 * 299.99447 * 19 18 17 40 40 H 1.08996 * 109.47454 * 59.99122 * 19 18 17 41 41 H 0.96994 * 119.99600 * 179.97438 * 23 22 20 42 42 H 1.08003 * 120.06474 * 180.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2905 1.0775 0.0000 4 6 3.5533 0.7093 -0.0029 5 8 4.6150 1.5464 -0.0071 6 7 3.6182 -0.6387 0.0048 7 1 4.4244 -1.1780 0.0081 8 6 2.3111 -1.1060 0.0067 9 6 1.8795 -2.5043 0.0145 10 8 0.6925 -2.7750 0.0159 11 7 2.7960 -3.4925 0.0200 12 6 2.3874 -4.8245 0.1388 13 6 3.0945 -5.8296 -0.5096 14 6 2.6943 -7.1458 -0.3872 15 6 1.5831 -7.4655 0.3699 16 6 0.8697 -6.4653 1.0151 17 8 -0.2231 -6.7811 1.7587 18 6 -0.5799 -8.1629 1.8331 19 6 -1.8259 -8.3216 2.7068 20 6 -2.2025 -9.7787 2.7847 21 1 -1.6125 -10.5176 2.2629 22 6 -3.3004 -10.1685 3.5221 23 7 -4.0192 -9.2686 4.1571 24 14 -3.7677 -11.9745 3.6181 25 1 -3.0790 -12.6032 4.7739 26 1 -5.2374 -12.0971 3.7912 27 1 -3.3580 -12.6591 2.3656 28 6 1.2715 -5.1437 0.8997 29 1 -0.3634 0.0063 1.0275 30 1 -0.3633 0.8868 -0.5193 31 1 -0.3634 -0.8931 -0.5085 32 1 4.9243 1.7849 -0.8916 33 1 3.7391 -3.2797 -0.0583 34 1 3.9601 -5.5819 -1.1061 35 1 3.2481 -7.9263 -0.8879 36 1 1.2699 -8.4952 0.4599 37 1 -0.7888 -8.5386 0.8314 38 1 0.2441 -8.7281 2.2686 39 1 -1.6175 -7.9458 3.7085 40 1 -2.6497 -7.7565 2.2709 41 1 -4.7917 -9.5428 4.6756 42 1 0.7177 -4.3640 1.4015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573575585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:24 Heat of formation + Delta-G solvation = -59.062411 kcal Electronic energy + Delta-G solvation = -26616.630422 eV Core-core repulsion = 22562.238507 eV Total energy + Delta-G solvation = -4054.391915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.47792 -41.61670 -40.48058 -38.64162 -38.27589 -35.99344 -35.41273 -34.33552 -32.60811 -32.09486 -30.99820 -30.32190 -28.15101 -26.99906 -24.91663 -23.79220 -23.60567 -22.86442 -21.75888 -21.21290 -20.53585 -19.63054 -18.98682 -18.38138 -17.55219 -17.26291 -17.15368 -16.94582 -16.78530 -16.57445 -16.42075 -15.96091 -15.58493 -15.03221 -14.51169 -14.44413 -14.31577 -14.30218 -14.26749 -13.67748 -13.44478 -13.36646 -13.23938 -13.08755 -12.75778 -12.67268 -12.55783 -12.23759 -11.82392 -11.62395 -11.53068 -11.40554 -11.30910 -11.26245 -11.03720 -10.62294 -9.69833 -9.41798 -9.03853 -8.26304 -6.40529 -0.20110 0.35646 0.47586 1.23039 1.40930 1.43838 1.47222 1.54968 1.72918 2.00651 2.28844 2.51837 2.74244 2.81140 3.07904 3.54967 3.79551 3.90385 3.97578 4.15380 4.19425 4.22649 4.27487 4.32596 4.41344 4.56069 4.64816 4.74257 4.77036 4.88341 4.92140 5.20563 5.22493 5.31255 5.37886 5.40291 5.45815 5.50374 5.67935 5.76380 5.86826 6.06582 6.16340 6.55615 6.60421 6.63016 6.74547 6.86916 7.29655 8.87025 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.020691 B = 0.002057 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.906367 B =13605.590044 C =14696.889150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.109 3.891 3 N -0.522 5.522 4 C 0.435 3.565 5 O -0.439 6.439 6 N -0.535 5.535 7 H 0.441 0.559 8 C -0.092 4.092 9 C 0.595 3.405 10 O -0.531 6.531 11 N -0.652 5.652 12 C 0.179 3.821 13 C -0.171 4.171 14 C -0.052 4.052 15 C -0.232 4.232 16 C 0.125 3.875 17 O -0.345 6.345 18 C 0.085 3.915 19 C 0.026 3.974 20 C -0.544 4.544 21 H 0.074 0.926 22 C -0.002 4.002 23 N -0.932 5.932 24 Si 0.979 3.021 25 H -0.269 1.269 26 H -0.282 1.282 27 H -0.257 1.257 28 C -0.183 4.183 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.435 0.565 33 H 0.427 0.573 34 H 0.170 0.830 35 H 0.167 0.833 36 H 0.133 0.867 37 H 0.062 0.938 38 H 0.065 0.935 39 H -0.003 1.003 40 H -0.005 1.005 41 H 0.267 0.733 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.002 16.637 -14.665 33.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.026 4.026 3 N -0.254 5.254 4 C 0.133 3.867 5 O -0.244 6.244 6 N -0.156 5.156 7 H 0.285 0.715 8 C -0.207 4.207 9 C 0.384 3.616 10 O -0.407 6.407 11 N -0.299 5.299 12 C 0.084 3.916 13 C -0.191 4.191 14 C -0.070 4.070 15 C -0.251 4.251 16 C 0.079 3.921 17 O -0.259 6.259 18 C 0.011 3.989 19 C -0.011 4.011 20 C -0.582 4.582 21 H 0.092 0.908 22 C -0.200 4.200 23 N -0.572 5.572 24 Si 0.802 3.198 25 H -0.195 1.195 26 H -0.208 1.208 27 H -0.181 1.181 28 C -0.205 4.205 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.298 0.702 33 H 0.266 0.734 34 H 0.187 0.813 35 H 0.184 0.816 36 H 0.151 0.849 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.015 0.985 40 H 0.013 0.987 41 H 0.075 0.925 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 23.685 17.506 -13.852 32.547 hybrid contribution 0.425 -1.474 0.082 1.536 sum 24.110 16.032 -13.769 32.061 Atomic orbital electron populations 1.20363 0.85949 1.04084 1.03562 1.21162 0.97396 0.86374 0.97665 1.70303 0.99940 1.30687 1.24432 1.20192 0.87435 0.79191 0.99882 1.84828 1.41911 1.60780 1.36916 1.43440 1.08176 1.07672 1.56340 0.71536 1.20212 0.84400 0.93430 1.22669 1.16934 0.85548 0.83185 0.75927 1.90949 1.17506 1.82940 1.49296 1.43055 1.10867 1.03303 1.72644 1.17300 0.94863 0.84005 0.95395 1.21116 1.03766 0.91394 1.02805 1.21145 0.93838 0.97019 0.95017 1.21560 1.00106 0.99148 1.04294 1.19239 0.87093 0.94173 0.91605 1.86104 1.43236 1.30100 1.66463 1.22897 0.97948 0.77864 1.00222 1.18984 0.91434 0.96832 0.93838 1.21396 1.12739 0.92433 1.31632 0.90800 1.26106 0.95923 1.03419 0.94572 1.70141 1.18405 1.36096 1.32527 0.85239 0.77292 0.77987 0.79255 1.19470 1.20785 1.18118 1.20248 1.01224 0.93985 1.04996 0.90380 0.89470 0.90032 0.70205 0.73408 0.81267 0.81565 0.84914 0.91979 0.91644 0.98505 0.98668 0.92474 0.86817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.77 9.87 71.23 0.70 -1.07 16 2 C 0.11 2.40 7.14 42.00 0.30 2.70 16 3 N -0.52 -10.86 11.22 -301.65 -3.38 -14.24 16 4 C 0.44 5.88 9.43 179.99 1.70 7.58 16 5 O -0.44 -3.13 13.62 -84.87 -1.16 -4.29 16 6 N -0.54 -5.37 6.12 -300.13 -1.84 -7.21 16 7 H 0.44 0.61 8.33 -92.71 -0.77 -0.17 16 8 C -0.09 -1.71 7.07 39.80 0.28 -1.43 16 9 C 0.60 13.58 7.51 86.35 0.65 14.23 16 10 O -0.53 -17.13 12.48 -4.50 -0.06 -17.18 16 11 N -0.65 -11.02 5.33 -307.37 -1.64 -12.66 16 12 C 0.18 4.22 6.28 38.16 0.24 4.46 16 13 C -0.17 -2.99 9.96 22.41 0.22 -2.76 16 14 C -0.05 -1.04 10.03 22.23 0.22 -0.82 16 15 C -0.23 -6.78 9.04 22.39 0.20 -6.58 16 16 C 0.13 4.62 6.68 22.49 0.15 4.77 16 17 O -0.34 -15.67 10.13 -92.41 -0.94 -16.60 16 18 C 0.08 3.83 4.68 71.98 0.34 4.17 16 19 C 0.03 1.49 5.34 29.85 0.16 1.65 16 20 C -0.54 -31.18 9.11 25.60 0.23 -30.95 16 21 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 22 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 23 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 24 Si 0.98 43.96 29.54 68.60 2.03 45.99 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 27 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 28 C -0.18 -6.22 8.59 22.49 0.19 -6.02 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.98 6.46 -2.39 -0.02 1.97 16 32 H 0.43 -1.88 9.06 -74.06 -0.67 -2.55 16 33 H 0.43 2.89 8.07 -92.71 -0.75 2.15 16 34 H 0.17 1.38 8.06 -2.91 -0.02 1.36 16 35 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.13 3.79 6.29 -2.91 -0.02 3.78 16 37 H 0.06 2.62 7.66 -2.39 -0.02 2.60 16 38 H 0.07 2.71 7.66 -2.39 -0.02 2.69 16 39 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 41 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.11 4.41 6.41 -2.91 -0.02 4.39 16 Total: -1.00 -85.17 363.93 -1.72 -86.89 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -1.08 Total: 6.71 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: 6.05 Total: -9.73 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -6.58 Total: -91.79 kcal Atomic # 8 Polarization: -35.92 SS G_CDS: -2.15 Total: -38.07 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -85.17 -1.72 -86.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573575585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.831 kcal (2) G-P(sol) polarization free energy of solvation -85.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds