Wall clock time and date at job start Tue Mar 31 2020 16:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00415 * 2 1 4 4 N 1.46499 * 109.47082 * 125.00071 * 3 2 1 5 5 C 1.46504 * 119.99777 * 270.00226 * 4 3 2 6 6 C 1.50698 * 109.46973 * 270.00000 * 5 4 3 7 7 H 1.08001 * 120.00373 * 359.97438 * 6 5 4 8 8 C 1.37884 * 120.00153 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99755 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00248 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47040 * 59.99627 * 10 8 6 12 12 H 1.48495 * 109.47257 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47152 * 299.99794 * 10 8 6 14 14 C 1.34768 * 120.00104 * 90.00249 * 4 3 2 15 15 O 1.21597 * 120.00157 * 179.97438 * 14 4 3 16 16 N 1.34779 * 120.00280 * 359.97438 * 14 4 3 17 17 C 1.40133 * 120.00512 * 184.59428 * 16 14 4 18 18 C 1.38853 * 119.97892 * 144.90409 * 17 16 14 19 19 C 1.38256 * 120.18585 * 180.02562 * 18 17 16 20 20 C 1.38397 * 119.96627 * 359.97438 * 19 18 17 21 21 C 1.39402 * 119.98383 * 0.03724 * 20 19 18 22 22 C 1.38466 * 120.04767 * 359.96634 * 21 20 19 23 23 N 1.40220 * 119.27537 * 179.97438 * 21 20 19 24 24 C 1.35075 * 118.99815 * 15.76692 * 23 21 20 25 25 O 1.21303 * 120.13012 * 181.40049 * 24 23 21 26 26 C 1.50744 * 119.74688 * 1.17711 * 24 23 21 27 27 O 1.36088 * 120.58500 * 180.09773 * 20 19 18 28 28 H 1.07996 * 120.00246 * 179.97438 * 1 2 3 29 29 H 1.08007 * 119.99432 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99305 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.46652 * 5.00384 * 3 2 1 32 32 H 1.08991 * 109.47224 * 245.00260 * 3 2 1 33 33 H 1.09000 * 109.47562 * 30.00108 * 5 4 3 34 34 H 1.09007 * 109.46843 * 150.00331 * 5 4 3 35 35 H 0.96993 * 119.99823 * 179.97438 * 9 8 6 36 36 H 0.97006 * 119.99096 * 4.58618 * 16 14 4 37 37 H 1.08004 * 119.90577 * 359.97438 * 18 17 16 38 38 H 1.08004 * 120.01762 * 179.97438 * 19 18 17 39 39 H 1.07996 * 120.11985 * 180.02562 * 22 21 20 40 40 H 0.97002 * 120.49446 * 195.48709 * 23 21 20 41 41 H 1.09000 * 109.54411 * 208.92582 * 26 24 23 42 42 H 1.08994 * 109.22172 * 89.06146 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5590 1.8648 2.4249 6 6 2.8444 3.3435 2.4804 7 1 3.3042 3.8368 1.6369 8 6 2.5195 4.0665 3.6087 9 7 1.9601 3.4657 4.6361 10 14 2.8740 5.8992 3.6778 11 1 2.1383 6.5871 2.5866 12 1 2.4331 6.4395 4.9888 13 1 4.3320 6.1279 3.5127 14 6 4.2497 0.8660 0.9824 15 8 5.0220 0.8886 1.9213 16 7 4.6497 0.3752 -0.2074 17 6 5.9223 -0.1970 -0.3373 18 6 6.1127 -1.2803 -1.1848 19 6 7.3663 -1.8485 -1.3159 20 6 8.4353 -1.3368 -0.6013 21 6 8.2473 -0.2494 0.2505 22 6 6.9918 0.3196 0.3818 23 7 9.3407 0.2568 0.9678 24 6 10.5898 -0.0927 0.5905 25 8 11.5494 0.3128 1.2119 26 6 10.7864 -0.9927 -0.6026 27 8 9.6750 -1.8850 -0.7222 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5399 0.9354 0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6214 1.4026 -0.9313 33 1 1.4889 1.6966 2.5460 34 1 3.0991 1.3601 3.2260 35 1 1.7319 3.9742 5.4299 36 1 4.0566 0.4179 -0.9738 37 1 5.2790 -1.6807 -1.7426 38 1 7.5112 -2.6914 -1.9755 39 1 6.8450 1.1622 1.0410 40 1 9.2023 0.8522 1.7209 41 1 11.7027 -1.5695 -0.4772 42 1 10.8616 -0.3834 -1.5032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590103966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:49 Heat of formation + Delta-G solvation = -30.877795 kcal Electronic energy + Delta-G solvation = -27830.555461 eV Core-core repulsion = 23777.385722 eV Total energy + Delta-G solvation = -4053.169739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.54216 -40.17474 -38.81006 -37.62565 -35.88871 -35.43593 -34.00977 -33.17559 -32.17007 -30.09349 -29.69657 -27.95686 -27.16033 -25.57675 -23.82759 -23.26869 -22.59668 -20.36421 -19.92630 -19.41668 -18.96627 -18.31313 -17.40536 -17.20790 -16.61146 -16.34485 -16.05467 -15.28236 -15.18271 -14.98835 -14.65147 -14.63877 -14.44533 -14.11084 -13.73806 -13.59025 -13.28923 -13.14414 -12.85950 -12.75299 -12.32500 -11.88654 -11.58347 -11.51972 -11.36434 -11.17627 -11.05715 -10.97109 -10.64165 -10.32477 -10.23931 -9.79957 -9.69430 -9.39152 -9.30117 -8.48608 -8.44709 -7.93979 -7.61940 -6.09418 -4.14725 0.93096 1.21622 2.12728 2.32019 2.60408 3.02835 3.19323 3.27967 3.33286 3.35991 3.48099 3.82429 3.85820 4.28922 4.43986 4.59379 4.67530 4.83117 5.06448 5.08164 5.13492 5.23857 5.25183 5.29401 5.41485 5.63774 5.67480 5.89006 6.00381 6.05862 6.19475 6.27862 6.39229 6.65789 6.66923 6.70988 6.84624 6.89332 7.19229 7.28077 7.41067 7.55965 7.61566 7.87433 8.16270 8.44090 8.85103 9.09817 9.50688 10.98438 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.011600 B = 0.003406 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.283905 B = 8217.785370 C =10268.409136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.173 4.173 3 C 0.137 3.863 4 N -0.600 5.600 5 C 0.262 3.738 6 C -0.530 4.530 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.698 3.302 15 O -0.567 6.567 16 N -0.695 5.695 17 C 0.193 3.807 18 C -0.146 4.146 19 C -0.086 4.086 20 C 0.046 3.954 21 C 0.111 3.889 22 C -0.124 4.124 23 N -0.655 5.655 24 C 0.490 3.510 25 O -0.518 6.518 26 C 0.052 3.948 27 O -0.303 6.303 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.404 0.596 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.157 0.843 40 H 0.420 0.580 41 H 0.143 0.857 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.418 -10.691 -16.706 20.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.193 4.193 3 C 0.012 3.988 4 N -0.334 5.334 5 C 0.143 3.857 6 C -0.569 4.569 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.400 3.600 15 O -0.443 6.443 16 N -0.345 5.345 17 C 0.096 3.904 18 C -0.168 4.168 19 C -0.106 4.106 20 C 0.000 4.000 21 C 0.015 3.985 22 C -0.147 4.147 23 N -0.302 5.302 24 C 0.277 3.723 25 O -0.393 6.393 26 C -0.026 4.026 27 O -0.218 6.218 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.242 0.758 37 H 0.153 0.847 38 H 0.158 0.842 39 H 0.175 0.825 40 H 0.260 0.740 41 H 0.160 0.840 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.469 -10.641 -15.542 20.263 hybrid contribution -0.364 1.549 0.217 1.606 sum 7.105 -9.092 -15.325 19.183 Atomic orbital electron populations 1.23841 0.95825 1.01875 0.99957 1.23432 0.96509 0.98897 1.00429 1.20549 0.93213 0.95824 0.89172 1.47603 1.08691 1.62792 1.14302 1.19252 0.95338 0.93570 0.77544 1.21399 1.40866 0.93340 1.01306 0.92506 1.24917 0.94994 0.98726 0.95297 1.69916 1.41787 1.36320 1.05162 0.86568 0.78815 0.84878 0.77201 1.20256 1.21149 1.20221 1.15949 0.83328 0.78612 0.82076 1.90891 1.52669 1.61404 1.39339 1.43007 1.15309 1.63692 1.12454 1.17234 0.84114 0.92343 0.96758 1.20689 0.97422 0.95614 1.03032 1.20165 0.90298 1.01217 0.98876 1.18486 0.86010 0.95841 0.99705 1.17847 0.88401 0.96078 0.96145 1.20919 0.88753 1.02167 1.02891 1.43768 1.04574 1.48739 1.33110 1.21562 0.82570 0.81306 0.86868 1.90811 1.39189 1.54810 1.54533 1.23129 0.90608 0.92946 0.95959 1.86251 1.11608 1.34158 1.89794 0.88685 0.88206 0.87699 0.88938 0.91485 0.94684 0.93694 0.92588 0.75828 0.84678 0.84172 0.82548 0.74048 0.83955 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 14.32 29.01 0.42 -1.65 16 2 C -0.17 -2.20 9.85 -36.03 -0.35 -2.55 16 3 C 0.14 1.98 5.65 -5.19 -0.03 1.95 16 4 N -0.60 -11.80 2.44 -182.18 -0.44 -12.24 16 5 C 0.26 6.54 5.16 -5.19 -0.03 6.51 16 6 C -0.53 -14.44 9.39 -34.44 -0.32 -14.76 16 7 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 10 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.70 13.62 8.12 -86.92 -0.71 12.92 16 15 O -0.57 -13.40 13.36 5.28 0.07 -13.33 16 16 N -0.69 -9.86 5.22 -14.18 -0.07 -9.94 16 17 C 0.19 2.61 6.30 -83.61 -0.53 2.09 16 18 C -0.15 -1.49 9.96 -39.35 -0.39 -1.88 16 19 C -0.09 -0.85 9.99 -39.52 -0.39 -1.25 16 20 C 0.05 0.55 6.44 -39.09 -0.25 0.30 16 21 C 0.11 1.49 6.54 -83.50 -0.55 0.94 16 22 C -0.12 -1.86 8.59 -39.27 -0.34 -2.20 16 23 N -0.65 -8.55 5.47 -9.68 -0.05 -8.60 16 24 C 0.49 6.18 7.94 -10.83 -0.09 6.09 16 25 O -0.52 -8.04 17.95 5.54 0.10 -7.94 16 26 C 0.05 0.47 7.16 36.03 0.26 0.73 16 27 O -0.30 -3.30 10.46 -20.02 -0.21 -3.51 16 28 H 0.09 0.96 8.06 -52.49 -0.42 0.53 16 29 H 0.10 1.15 7.84 -52.48 -0.41 0.74 16 30 H 0.10 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.09 1.42 7.72 -51.92 -0.40 1.02 16 32 H 0.07 0.76 6.30 -51.93 -0.33 0.44 16 33 H 0.04 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.40 4.40 6.52 -40.82 -0.27 4.14 16 37 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 38 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 39 H 0.16 2.77 6.22 -52.49 -0.33 2.44 16 40 H 0.42 5.39 8.89 -40.82 -0.36 5.03 16 41 H 0.14 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -34.22 363.54 -7.80 -42.01 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -4.98 Total: 8.02 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: -3.40 Total: 8.88 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.17 Total: -55.97 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.04 Total: -24.78 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.22 -7.80 -42.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590103966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.136 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds