Wall clock time and date at job start Tue Mar 31 2020 16:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 120.00415 * 2 1 4 4 N 1.46499 * 109.47082 * 125.00071 * 3 2 1 5 5 C 1.46504 * 119.99777 * 270.00226 * 4 3 2 6 6 C 1.50698 * 109.46973 * 270.00000 * 5 4 3 7 7 H 1.08001 * 120.00373 * 359.97438 * 6 5 4 8 8 C 1.37884 * 120.00153 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99755 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00248 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47040 * 59.99627 * 10 8 6 12 12 H 1.48495 * 109.47257 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47152 * 299.99794 * 10 8 6 14 14 C 1.34768 * 120.00104 * 90.00249 * 4 3 2 15 15 O 1.21597 * 120.00157 * 179.97438 * 14 4 3 16 16 N 1.34779 * 120.00280 * 359.97438 * 14 4 3 17 17 C 1.40133 * 120.00512 * 184.59428 * 16 14 4 18 18 C 1.38853 * 119.97892 * 144.90409 * 17 16 14 19 19 C 1.38256 * 120.18585 * 180.02562 * 18 17 16 20 20 C 1.38397 * 119.96627 * 359.97438 * 19 18 17 21 21 C 1.39402 * 119.98383 * 0.03724 * 20 19 18 22 22 C 1.38466 * 120.04767 * 359.96634 * 21 20 19 23 23 N 1.40220 * 119.27537 * 179.97438 * 21 20 19 24 24 C 1.35075 * 118.99815 * 15.76692 * 23 21 20 25 25 O 1.21303 * 120.13012 * 181.40049 * 24 23 21 26 26 C 1.50744 * 119.74688 * 1.17711 * 24 23 21 27 27 O 1.36088 * 120.58500 * 180.09773 * 20 19 18 28 28 H 1.07996 * 120.00246 * 179.97438 * 1 2 3 29 29 H 1.08007 * 119.99432 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99305 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.46652 * 5.00384 * 3 2 1 32 32 H 1.08991 * 109.47224 * 245.00260 * 3 2 1 33 33 H 1.09000 * 109.47562 * 30.00108 * 5 4 3 34 34 H 1.09007 * 109.46843 * 150.00331 * 5 4 3 35 35 H 0.96993 * 119.99823 * 179.97438 * 9 8 6 36 36 H 0.97006 * 119.99096 * 4.58618 * 16 14 4 37 37 H 1.08004 * 119.90577 * 359.97438 * 18 17 16 38 38 H 1.08004 * 120.01762 * 179.97438 * 19 18 17 39 39 H 1.07996 * 120.11985 * 180.02562 * 22 21 20 40 40 H 0.97002 * 120.49446 * 195.48709 * 23 21 20 41 41 H 1.09000 * 109.54411 * 208.92582 * 26 24 23 42 42 H 1.08994 * 109.22172 * 89.06146 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5590 1.8648 2.4249 6 6 2.8444 3.3435 2.4804 7 1 3.3042 3.8368 1.6369 8 6 2.5195 4.0665 3.6087 9 7 1.9601 3.4657 4.6361 10 14 2.8740 5.8992 3.6778 11 1 2.1383 6.5871 2.5866 12 1 2.4331 6.4395 4.9888 13 1 4.3320 6.1279 3.5127 14 6 4.2497 0.8660 0.9824 15 8 5.0220 0.8886 1.9213 16 7 4.6497 0.3752 -0.2074 17 6 5.9223 -0.1970 -0.3373 18 6 6.1127 -1.2803 -1.1848 19 6 7.3663 -1.8485 -1.3159 20 6 8.4353 -1.3368 -0.6013 21 6 8.2473 -0.2494 0.2505 22 6 6.9918 0.3196 0.3818 23 7 9.3407 0.2568 0.9678 24 6 10.5898 -0.0927 0.5905 25 8 11.5494 0.3128 1.2119 26 6 10.7864 -0.9927 -0.6026 27 8 9.6750 -1.8850 -0.7222 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5399 0.9354 0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 1.3587 2.1316 0.0896 32 1 2.6214 1.4026 -0.9313 33 1 1.4889 1.6966 2.5460 34 1 3.0991 1.3601 3.2260 35 1 1.7319 3.9742 5.4299 36 1 4.0566 0.4179 -0.9738 37 1 5.2790 -1.6807 -1.7426 38 1 7.5112 -2.6914 -1.9755 39 1 6.8450 1.1622 1.0410 40 1 9.2023 0.8522 1.7209 41 1 11.7027 -1.5695 -0.4772 42 1 10.8616 -0.3834 -1.5032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590103966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:49 Heat of formation + Delta-G solvation = -55.264598 kcal Electronic energy + Delta-G solvation = -27831.612952 eV Core-core repulsion = 23777.385722 eV Total energy + Delta-G solvation = -4054.227230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.50346 -41.51296 -39.88820 -38.65179 -37.25513 -36.54509 -35.38781 -34.77125 -33.69915 -31.11977 -30.70985 -29.46259 -28.32483 -26.92837 -25.30601 -24.30226 -23.97241 -21.59474 -20.93659 -20.63430 -19.91821 -19.43600 -18.70968 -18.45269 -18.27192 -17.54980 -17.07856 -16.73281 -16.44669 -16.12940 -15.99512 -15.76391 -15.62718 -15.25938 -14.92809 -14.81160 -14.40775 -14.24419 -14.15429 -14.05037 -13.68073 -13.31017 -13.08330 -12.88119 -12.59711 -12.53086 -12.47584 -12.24365 -12.20241 -12.10049 -11.70323 -11.35819 -11.04282 -10.74063 -10.63891 -10.31610 -9.61787 -9.40367 -8.69649 -8.21499 -6.36324 -0.02113 0.24491 1.17293 1.27552 1.36301 1.39747 1.47013 1.64603 1.84500 2.14211 2.31538 2.38111 2.74507 2.92720 3.04915 3.09260 3.66008 4.03274 4.03397 4.14895 4.17764 4.19227 4.23626 4.35358 4.41493 4.72326 4.76278 4.82632 4.92606 5.01438 5.07382 5.20502 5.31229 5.34795 5.39298 5.51130 5.70016 5.72187 5.75307 5.82006 5.93534 6.06198 6.08530 6.26913 6.60202 6.72729 7.04298 7.30776 7.62465 8.84526 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.011600 B = 0.003406 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.283905 B = 8217.785370 C =10268.409136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.185 4.185 3 C 0.133 3.867 4 N -0.607 5.607 5 C 0.282 3.718 6 C -0.542 4.542 7 H 0.054 0.946 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.963 3.037 11 H -0.259 1.259 12 H -0.280 1.280 13 H -0.281 1.281 14 C 0.694 3.306 15 O -0.619 6.619 16 N -0.671 5.671 17 C 0.167 3.833 18 C -0.120 4.120 19 C -0.073 4.073 20 C 0.048 3.952 21 C 0.097 3.903 22 C -0.147 4.147 23 N -0.663 5.663 24 C 0.485 3.515 25 O -0.556 6.556 26 C 0.057 3.943 27 O -0.302 6.302 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.026 0.974 34 H -0.002 1.002 35 H 0.267 0.733 36 H 0.422 0.578 37 H 0.176 0.824 38 H 0.180 0.820 39 H 0.117 0.883 40 H 0.413 0.587 41 H 0.171 0.829 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.298 -12.186 -20.228 24.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.204 4.204 3 C 0.011 3.989 4 N -0.340 5.340 5 C 0.160 3.840 6 C -0.581 4.581 7 H 0.072 0.928 8 C -0.188 4.188 9 N -0.567 5.567 10 Si 0.788 3.212 11 H -0.184 1.184 12 H -0.205 1.205 13 H -0.207 1.207 14 C 0.396 3.604 15 O -0.499 6.499 16 N -0.323 5.323 17 C 0.071 3.929 18 C -0.141 4.141 19 C -0.092 4.092 20 C 0.001 3.999 21 C 0.001 3.999 22 C -0.170 4.170 23 N -0.308 5.308 24 C 0.274 3.726 25 O -0.434 6.434 26 C -0.021 4.021 27 O -0.217 6.217 28 H 0.134 0.866 29 H 0.117 0.883 30 H 0.133 0.867 31 H 0.100 0.900 32 H 0.120 0.880 33 H 0.044 0.956 34 H 0.016 0.984 35 H 0.076 0.924 36 H 0.263 0.737 37 H 0.193 0.807 38 H 0.197 0.803 39 H 0.135 0.865 40 H 0.251 0.749 41 H 0.188 0.812 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.321 -12.169 -19.170 23.857 hybrid contribution -0.302 1.937 1.274 2.338 sum 7.019 -10.231 -17.896 21.776 Atomic orbital electron populations 1.24059 0.95595 1.02879 0.97932 1.23321 0.96801 0.98138 1.02170 1.20808 0.92784 0.96795 0.88543 1.47401 1.09832 1.62779 1.13953 1.18611 0.93846 0.92310 0.79196 1.21700 1.40523 0.94556 1.01336 0.92820 1.25787 0.94733 1.03402 0.94913 1.70036 1.42796 1.38087 1.05736 0.85538 0.78316 0.79478 0.77887 1.18361 1.20496 1.20678 1.16125 0.82721 0.78502 0.83016 1.90866 1.54047 1.63343 1.41643 1.42578 1.15916 1.62770 1.11040 1.17505 0.83041 0.94029 0.98348 1.21061 0.98832 0.93295 1.00961 1.20639 0.89110 1.01380 0.98109 1.18763 0.87155 0.94869 0.99065 1.17923 0.87720 0.97101 0.97111 1.20698 0.90528 1.02166 1.03630 1.43938 1.05218 1.48648 1.33030 1.22336 0.81662 0.81132 0.87453 1.90787 1.40065 1.56500 1.56010 1.23406 0.90799 0.92888 0.94982 1.86255 1.11483 1.34459 1.89481 0.86595 0.88328 0.86673 0.89999 0.87974 0.95603 0.98433 0.92446 0.73675 0.80695 0.80259 0.86532 0.74919 0.81195 0.85609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 14.32 67.78 0.97 -2.59 16 2 C -0.19 -4.38 9.85 25.64 0.25 -4.13 16 3 C 0.13 3.75 5.65 85.63 0.48 4.24 16 4 N -0.61 -24.50 2.44 -848.55 -2.07 -26.57 16 5 C 0.28 14.83 5.16 85.63 0.44 15.27 16 6 C -0.54 -30.62 9.39 25.60 0.24 -30.38 16 7 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 8 C 0.01 0.62 5.46 84.66 0.46 1.08 16 9 N -0.93 -55.57 13.29 21.45 0.28 -55.29 16 10 Si 0.96 44.60 29.54 68.60 2.03 46.62 16 11 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 13 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 14 C 0.69 28.01 8.12 179.06 1.45 29.47 16 15 O -0.62 -31.37 13.36 -4.02 -0.05 -31.42 16 16 N -0.67 -18.55 5.22 -317.05 -1.66 -20.21 16 17 C 0.17 4.35 6.30 38.11 0.24 4.59 16 18 C -0.12 -1.99 9.96 22.42 0.22 -1.77 16 19 C -0.07 -1.13 9.99 22.31 0.22 -0.91 16 20 C 0.05 1.03 6.44 22.59 0.15 1.17 16 21 C 0.10 2.61 6.54 38.13 0.25 2.86 16 22 C -0.15 -4.60 8.59 22.47 0.19 -4.41 16 23 N -0.66 -18.16 5.47 -302.74 -1.66 -19.82 16 24 C 0.49 12.21 7.94 87.62 0.70 12.91 16 25 O -0.56 -17.62 17.95 -3.10 -0.06 -17.67 16 26 C 0.06 0.88 7.16 71.25 0.51 1.39 16 27 O -0.30 -5.63 10.46 -94.54 -0.99 -6.62 16 28 H 0.12 2.00 8.06 -2.91 -0.02 1.98 16 29 H 0.10 2.12 7.84 -2.91 -0.02 2.10 16 30 H 0.12 2.51 8.06 -2.91 -0.02 2.49 16 31 H 0.08 2.48 7.72 -2.38 -0.02 2.47 16 32 H 0.10 2.10 6.30 -2.39 -0.02 2.08 16 33 H 0.03 1.39 8.07 -2.39 -0.02 1.37 16 34 H 0.00 -0.15 7.42 -2.38 -0.02 -0.17 16 35 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 36 H 0.42 8.18 6.52 -92.70 -0.60 7.57 16 37 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 39 H 0.12 4.60 6.22 -2.91 -0.02 4.58 16 40 H 0.41 11.84 8.89 -92.71 -0.82 11.01 16 41 H 0.17 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -80.54 363.54 2.27 -78.26 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -0.34 Total: 23.92 kcal Atomic # 6 Polarization: 22.00 SS G_CDS: 6.79 Total: 28.79 kcal Atomic # 7 Polarization: -116.79 SS G_CDS: -5.10 Total: -121.89 kcal Atomic # 8 Polarization: -54.61 SS G_CDS: -1.10 Total: -55.71 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -80.54 2.27 -78.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590103966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.000 kcal (2) G-P(sol) polarization free energy of solvation -80.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds