Wall clock time and date at job start Tue Mar 31 2020 16:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47261 * 2 1 4 4 C 1.52998 * 109.46891 * 240.00185 * 2 1 3 5 5 O 1.45203 * 109.47000 * 120.00234 * 2 1 3 6 6 C 1.34701 * 117.00017 * 60.00114 * 5 2 1 7 7 O 1.21464 * 120.00419 * 359.97438 * 6 5 2 8 8 C 1.47813 * 120.00011 * 179.97438 * 6 5 2 9 9 C 1.40014 * 120.46270 * 179.97438 * 8 6 5 10 10 C 1.38326 * 118.36806 * 179.97438 * 9 8 6 11 11 C 1.39465 * 119.19235 * 0.02562 * 10 9 8 12 12 C 1.48086 * 119.57556 * 179.97438 * 11 10 9 13 13 O 1.21563 * 120.00416 * 353.08910 * 12 11 10 14 14 N 1.34778 * 120.00054 * 173.08832 * 12 11 10 15 15 C 1.36603 * 120.00030 * 181.81403 * 14 12 11 16 16 H 1.07997 * 120.00066 * 31.98023 * 15 14 12 17 17 C 1.39241 * 119.99655 * 211.97536 * 15 14 12 18 18 N 1.31234 * 119.99999 * 21.88111 * 17 15 14 19 19 Si 1.86800 * 119.99935 * 201.87792 * 17 15 14 20 20 H 1.48500 * 109.47159 * 59.99849 * 19 17 15 21 21 H 1.48499 * 109.47240 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47340 * 300.00336 * 19 17 15 23 23 C 1.46503 * 120.00007 * 1.80996 * 14 12 11 24 24 C 1.47201 * 109.46921 * 82.29184 * 23 14 12 25 25 N 7.62682 * 101.54941 * 98.59210 * 2 1 3 26 26 N 1.32833 * 120.84887 * 0.02562 * 11 10 9 27 27 C 1.31382 * 121.79189 * 359.97438 * 26 11 10 28 28 H 1.09004 * 109.47141 * 300.00098 * 1 2 3 29 29 H 1.09005 * 109.46977 * 59.99448 * 1 2 3 30 30 H 1.08995 * 109.47222 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47424 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47477 * 300.00185 * 3 2 1 33 33 H 1.09004 * 109.47122 * 59.99891 * 3 2 1 34 34 H 1.09000 * 109.47368 * 299.99812 * 4 2 1 35 35 H 1.08997 * 109.47575 * 60.00203 * 4 2 1 36 36 H 1.09005 * 109.46568 * 180.02562 * 4 2 1 37 37 H 1.08002 * 120.81564 * 359.96274 * 9 8 6 38 38 H 1.07997 * 120.41001 * 179.73223 * 10 9 8 39 39 H 0.97002 * 119.99675 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47273 * 202.29380 * 23 14 12 41 41 H 1.08997 * 109.46961 * 322.29520 * 23 14 12 42 42 H 1.08005 * 119.63654 * 180.02562 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6520 -1.9730 1.3383 7 8 0.9510 -2.5099 0.5044 8 6 2.1080 -2.7335 2.5209 9 6 1.7372 -4.0731 2.6897 10 6 2.1888 -4.7436 3.8121 11 6 2.9916 -4.0682 4.7310 12 6 3.4793 -4.7777 5.9358 13 8 3.0798 -5.8985 6.1846 14 7 4.3662 -4.1808 6.7566 15 6 4.8443 -4.8493 7.8477 16 1 4.9636 -5.9222 7.8142 17 6 5.1779 -4.1475 9.0031 18 7 4.6592 -2.9623 9.2237 19 14 6.3636 -4.8929 10.2392 20 1 7.6712 -5.1437 9.5816 21 1 6.5515 -3.9533 11.3736 22 1 5.8102 -6.1747 10.7452 23 6 4.8175 -2.8151 6.4785 24 6 3.8253 -1.8564 6.9916 25 7 3.0570 -1.1164 7.3885 26 7 3.3235 -2.7963 4.5398 27 6 2.9148 -2.1250 3.4870 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 1.1137 -4.5705 1.9615 38 1 1.9192 -5.7763 3.9774 39 1 4.8919 -2.4732 10.0284 40 1 5.7762 -2.6426 6.9677 41 1 4.9293 -2.6814 5.4026 42 1 3.2060 -1.0919 3.3662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592593989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:03 Heat of formation + Delta-G solvation = -31.171047 kcal Electronic energy + Delta-G solvation = -28100.998612 eV Core-core repulsion = 24047.816157 eV Total energy + Delta-G solvation = -4053.182455 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.06733 -40.10136 -38.23327 -37.01687 -35.73684 -34.31445 -34.20751 -32.78039 -31.82428 -31.25397 -27.65548 -27.63803 -27.41111 -26.32234 -24.48155 -23.42828 -22.23325 -20.25939 -19.83556 -17.91414 -17.88962 -17.07166 -16.89631 -16.33255 -16.11445 -16.06646 -15.05734 -14.93599 -14.59259 -14.37318 -14.30956 -14.00080 -13.83511 -13.44525 -13.38889 -12.96682 -12.75008 -12.61430 -12.43114 -12.21986 -12.14402 -12.13526 -12.02811 -11.70026 -11.54073 -11.47025 -11.25245 -11.17455 -10.62836 -10.59852 -10.58152 -10.48552 -10.24986 -9.82199 -9.40583 -9.22605 -9.03174 -8.64565 -8.05423 -6.68264 -4.18831 0.36535 1.34526 2.36427 2.46711 3.05470 3.13422 3.15739 3.43348 3.73749 4.01814 4.13003 4.27658 4.33405 4.44835 4.51106 4.56287 4.65750 4.70334 4.80949 4.85395 5.04214 5.22584 5.27241 5.27868 5.42263 5.44451 5.46813 5.53695 5.58128 5.60538 5.75612 5.86418 6.00279 6.03049 6.05565 6.10958 6.35142 6.36789 6.41186 6.73728 7.26528 7.67954 7.77589 7.92351 8.14718 8.82075 8.95857 9.00128 9.61310 10.34011 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022699 B = 0.002936 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.239238 B = 9535.358220 C =10320.720380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.118 3.882 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.345 6.345 6 C 0.523 3.477 7 O -0.506 6.506 8 C -0.195 4.195 9 C -0.015 4.015 10 C -0.140 4.140 11 C 0.145 3.855 12 C 0.476 3.524 13 O -0.569 6.569 14 N -0.397 5.397 15 C -0.314 4.314 16 H 0.109 0.891 17 C 0.041 3.959 18 N -0.838 5.838 19 Si 0.930 3.070 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.269 1.269 23 C 0.211 3.789 24 C 0.264 3.736 25 N -0.479 5.479 26 N -0.474 5.474 27 C 0.159 3.841 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.280 0.720 40 H 0.101 0.899 41 H 0.124 0.876 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.650 6.529 -17.486 18.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.082 3.918 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.262 6.262 6 C 0.368 3.632 7 O -0.396 6.396 8 C -0.199 4.199 9 C -0.040 4.040 10 C -0.161 4.161 11 C 0.007 3.993 12 C 0.266 3.734 13 O -0.452 6.452 14 N -0.113 5.113 15 C -0.442 4.442 16 H 0.127 0.873 17 C -0.169 4.169 18 N -0.472 5.472 19 Si 0.755 3.245 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.193 1.193 23 C 0.085 3.915 24 C -0.054 4.054 25 N -0.159 5.159 26 N -0.187 5.187 27 C -0.001 4.001 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.165 0.835 38 H 0.172 0.828 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.141 0.859 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.636 7.484 -16.214 17.933 hybrid contribution 0.109 -0.728 -0.090 0.742 sum -1.527 6.756 -16.304 17.714 Atomic orbital electron populations 1.22502 0.94023 1.04816 1.02763 1.22190 0.94440 0.92278 0.82870 1.21857 1.02380 0.92474 1.03126 1.22495 1.01802 1.03165 0.96546 1.86598 1.69747 1.24718 1.45170 1.20878 0.76990 0.80275 0.85049 1.90720 1.35682 1.70167 1.43009 1.20151 1.07211 0.95609 0.96928 1.21612 0.94383 0.91768 0.96241 1.22025 0.98375 1.02448 0.93295 1.22131 0.92811 0.89835 0.94477 1.17695 0.82650 0.87953 0.85130 1.90657 1.59704 1.19581 1.75292 1.43465 1.34149 1.11429 1.22265 1.19732 1.40046 0.94377 0.90040 0.87311 1.25612 0.97363 0.96142 0.97756 1.69813 1.36745 1.13453 1.27213 0.85928 0.80392 0.79135 0.79012 1.19212 1.20746 1.19345 1.19235 0.92764 0.78577 1.00952 1.28843 0.93630 0.92990 0.89956 1.80925 1.10643 1.12349 1.12003 1.68377 1.22023 1.07902 1.20353 1.23266 0.89677 0.99746 0.87382 0.91872 0.91086 0.89755 0.91295 0.90376 0.91295 0.89761 0.91101 0.91874 0.83459 0.82824 0.90953 0.88104 0.85868 0.81408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 8.37 37.16 0.31 -1.43 16 2 C 0.12 1.14 1.13 -90.62 -0.10 1.04 16 3 C -0.14 -1.03 8.85 37.16 0.33 -0.70 16 4 C -0.18 -1.65 8.37 37.16 0.31 -1.34 16 5 O -0.34 -4.13 9.16 -40.49 -0.37 -4.50 16 6 C 0.52 6.96 7.21 34.65 0.25 7.21 16 7 O -0.51 -7.19 11.95 -19.24 -0.23 -7.42 16 8 C -0.19 -2.72 5.90 -104.73 -0.62 -3.34 16 9 C -0.01 -0.20 9.71 -38.88 -0.38 -0.58 16 10 C -0.14 -2.27 9.62 -39.09 -0.38 -2.65 16 11 C 0.14 2.76 6.60 -82.94 -0.55 2.21 16 12 C 0.48 11.09 7.52 -12.22 -0.09 11.00 16 13 O -0.57 -14.78 16.14 5.31 0.09 -14.70 16 14 N -0.40 -9.33 2.55 -118.94 -0.30 -9.63 16 15 C -0.31 -7.84 8.97 -15.05 -0.13 -7.97 16 16 H 0.11 2.78 7.67 -52.49 -0.40 2.38 16 17 C 0.04 0.98 4.78 -17.43 -0.08 0.90 16 18 N -0.84 -21.07 10.25 55.51 0.57 -20.51 16 19 Si 0.93 18.62 29.61 -169.99 -5.03 13.58 16 20 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 C 0.21 4.30 4.78 -6.83 -0.03 4.27 16 24 C 0.26 5.99 11.66 -20.69 -0.24 5.74 16 25 N -0.48 -11.70 18.55 42.24 0.78 -10.92 16 26 N -0.47 -8.25 4.85 -9.48 -0.05 -8.29 16 27 C 0.16 2.32 10.78 -17.16 -0.18 2.13 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.96 5.88 -51.93 -0.31 0.66 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.93 5.88 -51.93 -0.31 0.62 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.15 1.74 7.73 -52.49 -0.41 1.34 16 38 H 0.15 2.40 7.64 -52.49 -0.40 2.00 16 39 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 40 H 0.10 1.98 7.33 -51.93 -0.38 1.60 16 41 H 0.12 2.16 5.39 -51.93 -0.28 1.88 16 42 H 0.17 2.06 7.62 -52.48 -0.40 1.66 16 LS Contribution 359.07 15.07 5.41 5.41 Total: -1.00 -30.67 359.07 -5.70 -36.37 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.97 Total: 4.11 kcal Atomic # 6 Polarization: 18.08 SS G_CDS: -1.59 Total: 16.49 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 1.00 Total: -49.35 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.52 Total: -26.61 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.67 -5.70 -36.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592593989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.196 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds