Wall clock time and date at job start Tue Mar 31 2020 16:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47261 * 2 1 4 4 C 1.52998 * 109.46891 * 240.00185 * 2 1 3 5 5 O 1.45203 * 109.47000 * 120.00234 * 2 1 3 6 6 C 1.34701 * 117.00017 * 60.00114 * 5 2 1 7 7 O 1.21464 * 120.00419 * 359.97438 * 6 5 2 8 8 C 1.47813 * 120.00011 * 179.97438 * 6 5 2 9 9 C 1.40014 * 120.46270 * 179.97438 * 8 6 5 10 10 C 1.38326 * 118.36806 * 179.97438 * 9 8 6 11 11 C 1.39465 * 119.19235 * 0.02562 * 10 9 8 12 12 C 1.48086 * 119.57556 * 179.97438 * 11 10 9 13 13 O 1.21563 * 120.00416 * 353.08910 * 12 11 10 14 14 N 1.34778 * 120.00054 * 173.08832 * 12 11 10 15 15 C 1.36603 * 120.00030 * 181.81403 * 14 12 11 16 16 H 1.07997 * 120.00066 * 31.98023 * 15 14 12 17 17 C 1.39241 * 119.99655 * 211.97536 * 15 14 12 18 18 N 1.31234 * 119.99999 * 21.88111 * 17 15 14 19 19 Si 1.86800 * 119.99935 * 201.87792 * 17 15 14 20 20 H 1.48500 * 109.47159 * 59.99849 * 19 17 15 21 21 H 1.48499 * 109.47240 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47340 * 300.00336 * 19 17 15 23 23 C 1.46503 * 120.00007 * 1.80996 * 14 12 11 24 24 C 1.47201 * 109.46921 * 82.29184 * 23 14 12 25 25 N 7.62682 * 101.54941 * 98.59210 * 2 1 3 26 26 N 1.32833 * 120.84887 * 0.02562 * 11 10 9 27 27 C 1.31382 * 121.79189 * 359.97438 * 26 11 10 28 28 H 1.09004 * 109.47141 * 300.00098 * 1 2 3 29 29 H 1.09005 * 109.46977 * 59.99448 * 1 2 3 30 30 H 1.08995 * 109.47222 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47424 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47477 * 300.00185 * 3 2 1 33 33 H 1.09004 * 109.47122 * 59.99891 * 3 2 1 34 34 H 1.09000 * 109.47368 * 299.99812 * 4 2 1 35 35 H 1.08997 * 109.47575 * 60.00203 * 4 2 1 36 36 H 1.09005 * 109.46568 * 180.02562 * 4 2 1 37 37 H 1.08002 * 120.81564 * 359.96274 * 9 8 6 38 38 H 1.07997 * 120.41001 * 179.73223 * 10 9 8 39 39 H 0.97002 * 119.99675 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47273 * 202.29380 * 23 14 12 41 41 H 1.08997 * 109.46961 * 322.29520 * 23 14 12 42 42 H 1.08005 * 119.63654 * 180.02562 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6520 -1.9730 1.3383 7 8 0.9510 -2.5099 0.5044 8 6 2.1080 -2.7335 2.5209 9 6 1.7372 -4.0731 2.6897 10 6 2.1888 -4.7436 3.8121 11 6 2.9916 -4.0682 4.7310 12 6 3.4793 -4.7777 5.9358 13 8 3.0798 -5.8985 6.1846 14 7 4.3662 -4.1808 6.7566 15 6 4.8443 -4.8493 7.8477 16 1 4.9636 -5.9222 7.8142 17 6 5.1779 -4.1475 9.0031 18 7 4.6592 -2.9623 9.2237 19 14 6.3636 -4.8929 10.2392 20 1 7.6712 -5.1437 9.5816 21 1 6.5515 -3.9533 11.3736 22 1 5.8102 -6.1747 10.7452 23 6 4.8175 -2.8151 6.4785 24 6 3.8253 -1.8564 6.9916 25 7 3.0570 -1.1164 7.3885 26 7 3.3235 -2.7963 4.5398 27 6 2.9148 -2.1250 3.4870 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2490 37 1 1.1137 -4.5705 1.9615 38 1 1.9192 -5.7763 3.9774 39 1 4.8919 -2.4732 10.0284 40 1 5.7762 -2.6426 6.9677 41 1 4.9293 -2.6814 5.4026 42 1 3.2060 -1.0919 3.3662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592593989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:01 Heat of formation + Delta-G solvation = -47.764469 kcal Electronic energy + Delta-G solvation = -28101.718157 eV Core-core repulsion = 24047.816157 eV Total energy + Delta-G solvation = -4053.902000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.18610 -41.42545 -39.81993 -38.01943 -37.56258 -36.05605 -35.15351 -34.26850 -33.40456 -32.58709 -29.13210 -28.34683 -28.26681 -27.85810 -25.99773 -24.68767 -23.38676 -21.76062 -20.82442 -19.69979 -19.09596 -18.51866 -18.16319 -17.86226 -17.28433 -17.08471 -16.72263 -16.02000 -15.97489 -15.80598 -15.53020 -15.29489 -14.95598 -14.87484 -14.56535 -14.50953 -14.10967 -13.80162 -13.56605 -13.35832 -13.32633 -13.12202 -13.05724 -12.92107 -12.84906 -12.81807 -12.50161 -12.44445 -12.28677 -12.17735 -12.08211 -11.40061 -11.25055 -11.14306 -11.09108 -10.91955 -10.37757 -10.22046 -9.86701 -8.47841 -6.10888 -0.91272 0.10753 1.13823 1.47549 1.49685 1.50875 1.59686 1.89300 2.09825 2.32820 2.43328 2.74341 2.77411 3.02619 3.27968 3.48710 3.69382 3.75409 3.77721 3.81525 3.81786 3.86123 3.97547 4.03288 4.56559 4.64015 4.65787 4.71645 4.74811 4.79795 4.81783 4.86362 4.91029 4.93908 4.99962 5.15920 5.28848 5.30382 5.39654 5.39923 5.46189 6.00366 6.27757 6.57618 6.68843 6.99763 7.17109 7.21934 7.80697 8.53735 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022699 B = 0.002936 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.239238 B = 9535.358220 C =10320.720380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.107 3.893 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.347 6.347 6 C 0.526 3.474 7 O -0.512 6.512 8 C -0.179 4.179 9 C 0.000 4.000 10 C -0.134 4.134 11 C 0.121 3.879 12 C 0.474 3.526 13 O -0.606 6.606 14 N -0.413 5.413 15 C -0.349 4.349 16 H 0.090 0.910 17 C 0.012 3.988 18 N -0.871 5.871 19 Si 0.994 3.006 20 H -0.252 1.252 21 H -0.280 1.280 22 H -0.276 1.276 23 C 0.217 3.783 24 C 0.277 3.723 25 N -0.514 5.514 26 N -0.484 5.484 27 C 0.161 3.839 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.174 0.826 38 H 0.157 0.843 39 H 0.278 0.722 40 H 0.106 0.894 41 H 0.154 0.846 42 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.590 7.964 -19.996 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.072 3.928 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.264 6.264 6 C 0.371 3.629 7 O -0.402 6.402 8 C -0.183 4.183 9 C -0.025 4.025 10 C -0.155 4.155 11 C -0.015 4.015 12 C 0.264 3.736 13 O -0.491 6.491 14 N -0.129 5.129 15 C -0.477 4.477 16 H 0.108 0.892 17 C -0.194 4.194 18 N -0.506 5.506 19 Si 0.817 3.183 20 H -0.176 1.176 21 H -0.205 1.205 22 H -0.202 1.202 23 C 0.091 3.909 24 C -0.040 4.040 25 N -0.195 5.195 26 N -0.196 5.196 27 C 0.001 3.999 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.192 0.808 38 H 0.174 0.826 39 H 0.088 0.912 40 H 0.124 0.876 41 H 0.171 0.829 42 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.564 8.941 -18.746 20.828 hybrid contribution -0.101 -1.110 0.357 1.170 sum -1.665 7.831 -18.389 20.057 Atomic orbital electron populations 1.22487 0.93937 1.03683 1.03825 1.22576 0.94686 0.93368 0.82178 1.21894 1.02640 0.90762 1.04197 1.22468 1.02000 1.02068 0.97155 1.86592 1.69586 1.23798 1.46466 1.20659 0.76867 0.80835 0.84521 1.90741 1.35844 1.70531 1.43101 1.20369 1.05498 0.95636 0.96755 1.21849 0.93548 0.91669 0.95482 1.22067 0.97456 1.02641 0.93313 1.21611 0.94928 0.90722 0.94240 1.18357 0.81720 0.87565 0.86000 1.90606 1.60694 1.21271 1.76564 1.43588 1.34764 1.12362 1.22228 1.19693 1.42419 0.94013 0.91532 0.89205 1.26306 0.98023 0.96335 0.98770 1.69894 1.38161 1.14737 1.27804 0.84984 0.78877 0.77712 0.76759 1.17602 1.20521 1.20184 1.19455 0.92072 0.76720 1.02629 1.29263 0.93222 0.92498 0.89001 1.80909 1.11770 1.13608 1.13212 1.68184 1.22660 1.07255 1.21550 1.23627 0.89348 1.00534 0.86417 0.92122 0.88806 0.91871 0.90941 0.88056 0.91507 0.91854 0.88905 0.91528 0.80819 0.82584 0.91162 0.87624 0.82925 0.78868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 8.37 71.98 0.60 -2.37 16 2 C 0.11 1.75 1.13 -10.80 -0.01 1.74 16 3 C -0.14 -1.55 8.85 71.98 0.64 -0.91 16 4 C -0.18 -2.72 8.37 71.98 0.60 -2.12 16 5 O -0.35 -7.34 9.16 -56.10 -0.51 -7.85 16 6 C 0.53 12.59 7.21 70.36 0.51 13.10 16 7 O -0.51 -13.28 11.95 19.95 0.24 -13.04 16 8 C -0.18 -4.52 5.90 -19.93 -0.12 -4.64 16 9 C 0.00 0.00 9.71 22.72 0.22 0.22 16 10 C -0.13 -4.17 9.62 22.59 0.22 -3.96 16 11 C 0.12 4.58 6.60 41.90 0.28 4.85 16 12 C 0.47 22.60 7.52 86.86 0.65 23.26 16 13 O -0.61 -32.62 16.14 -3.91 -0.06 -32.68 16 14 N -0.41 -19.93 2.55 -648.49 -1.65 -21.58 16 15 C -0.35 -18.04 8.97 84.19 0.75 -17.29 16 16 H 0.09 4.85 7.67 -2.91 -0.02 4.82 16 17 C 0.01 0.58 4.78 85.02 0.41 0.99 16 18 N -0.87 -44.70 10.25 21.71 0.22 -44.48 16 19 Si 0.99 38.85 29.61 68.60 2.03 40.88 16 20 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 21 H -0.28 -10.73 7.11 99.48 0.71 -10.03 16 22 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 23 C 0.22 8.89 4.78 84.57 0.40 9.30 16 24 C 0.28 12.66 11.66 89.42 1.04 13.70 16 25 N -0.51 -25.28 18.55 20.03 0.37 -24.91 16 26 N -0.48 -16.26 4.85 -183.90 -0.89 -17.16 16 27 C 0.16 4.30 10.78 85.14 0.92 5.22 16 28 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.06 1.32 5.88 -2.39 -0.01 1.30 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.79 8.14 -2.38 -0.02 0.78 16 34 H 0.06 1.25 5.88 -2.39 -0.01 1.23 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.17 3.53 7.73 -2.91 -0.02 3.51 16 38 H 0.16 4.79 7.64 -2.91 -0.02 4.77 16 39 H 0.28 13.72 8.30 -92.71 -0.77 12.95 16 40 H 0.11 4.19 7.33 -2.39 -0.02 4.18 16 41 H 0.15 5.24 5.39 -2.39 -0.01 5.23 16 42 H 0.19 4.16 7.62 -2.91 -0.02 4.13 16 Total: -1.00 -68.21 359.07 7.93 -60.29 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 1.07 Total: 19.45 kcal Atomic # 6 Polarization: 33.98 SS G_CDS: 7.11 Total: 41.09 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -1.95 Total: -108.12 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -0.34 Total: -53.58 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Total: -68.21 7.93 -60.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592593989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.521 kcal (2) G-P(sol) polarization free energy of solvation -68.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds