Wall clock time and date at job start Tue Mar 31 2020 16:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.47332 * 2 1 4 4 N 1.30014 * 127.39842 * 270.02226 * 3 2 1 5 5 O 1.20859 * 113.52924 * 179.97438 * 4 3 2 6 6 C 1.34447 * 113.06900 * 359.97438 * 5 4 3 7 7 N 1.32338 * 134.98258 * 179.97438 * 6 5 4 8 8 C 1.31471 * 121.77767 * 179.73165 * 7 6 5 9 9 C 1.40019 * 121.52061 * 0.59855 * 8 7 6 10 10 C 1.47705 * 120.49873 * 179.69133 * 9 8 7 11 11 O 1.21570 * 120.00473 * 25.35696 * 10 9 8 12 12 N 1.34777 * 119.99929 * 205.35206 * 10 9 8 13 13 C 1.47423 * 125.64729 * 356.34865 * 12 10 9 14 14 C 1.54906 * 104.83301 * 155.91282 * 13 12 10 15 15 C 1.55156 * 101.58296 * 37.00871 * 14 13 12 16 16 O 1.42902 * 110.72095 * 83.04160 * 15 14 13 17 17 C 1.50699 * 110.71796 * 206.13788 * 15 14 13 18 18 H 1.08001 * 120.00282 * 355.17796 * 17 15 14 19 19 C 1.37877 * 119.99766 * 174.90728 * 17 15 14 20 20 N 1.31518 * 119.99942 * 354.46467 * 19 17 15 21 21 Si 1.86800 * 120.00234 * 174.47076 * 19 17 15 22 22 H 1.48505 * 109.47279 * 94.99070 * 21 19 17 23 23 H 1.48501 * 109.47092 * 214.99223 * 21 19 17 24 24 H 1.48498 * 109.47115 * 334.99111 * 21 19 17 25 25 C 1.47319 * 125.61733 * 176.57614 * 12 10 9 26 26 C 1.39900 * 118.99702 * 359.42217 * 9 8 7 27 27 C 1.38662 * 117.70985 * 0.27403 * 26 9 8 28 28 H 1.09006 * 109.46748 * 60.00706 * 1 2 3 29 29 H 1.08996 * 109.47657 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47529 * 300.00665 * 1 2 3 31 31 H 1.09001 * 109.47248 * 239.99586 * 2 1 3 32 32 H 1.09010 * 109.46512 * 119.99724 * 2 1 3 33 33 H 1.08004 * 119.24046 * 180.29378 * 8 7 6 34 34 H 1.09000 * 110.36968 * 37.06881 * 13 12 10 35 35 H 1.09008 * 110.36554 * 274.75132 * 13 12 10 36 36 H 1.09004 * 111.00461 * 278.93349 * 14 13 12 37 37 H 1.09000 * 111.04228 * 155.10206 * 14 13 12 38 38 H 0.96698 * 113.99686 * 182.44018 * 16 15 14 39 39 H 0.97003 * 119.99906 * 180.02562 * 20 19 17 40 40 H 1.08998 * 110.06324 * 61.67832 * 25 12 10 41 41 H 1.08998 * 109.84781 * 300.41807 * 25 12 10 42 42 H 1.07994 * 121.14953 * 180.29950 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2952 2.1653 -1.0329 5 8 2.6860 3.2717 -0.7432 6 6 2.7572 3.4745 0.5840 7 7 3.1150 4.4867 1.3578 8 6 3.0790 4.4021 2.6693 9 6 2.6708 3.2293 3.3162 10 6 2.6453 3.1568 4.7913 11 8 2.5213 4.1724 5.4478 12 7 2.7596 1.9646 5.4094 13 6 2.8388 0.6537 4.7397 14 6 3.5589 -0.2677 5.7556 15 6 2.9780 0.2391 7.1021 16 8 1.7102 -0.3655 7.3653 17 6 3.9389 -0.0284 8.2317 18 1 4.8476 -0.5824 8.0480 19 6 3.6607 0.4389 9.4987 20 7 2.6142 1.2096 9.7002 21 14 4.7703 -0.0223 10.9290 22 1 5.7776 1.0485 11.1394 23 1 3.9527 -0.1813 12.1584 24 1 5.4626 -1.3006 10.6261 25 6 2.8211 1.7561 6.8665 26 6 2.2820 2.1292 2.5444 27 6 2.3284 2.2607 1.1648 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8901 33 1 3.3757 5.2552 3.2614 34 1 3.4193 0.7317 3.8205 35 1 1.8389 0.2753 4.5269 36 1 4.6387 -0.1234 5.7169 37 1 3.3005 -1.3132 5.5874 38 1 1.2870 -0.0542 8.1772 39 1 2.4187 1.5387 10.5915 40 1 1.9026 2.1108 7.3341 41 1 3.6789 2.2863 7.2803 42 1 1.9565 1.2092 3.0070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:27 Heat of formation + Delta-G solvation = -2.743311 kcal Electronic energy + Delta-G solvation = -28475.738947 eV Core-core repulsion = 24423.789211 eV Total energy + Delta-G solvation = -4051.949736 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.90738 -41.74710 -40.23369 -38.88060 -36.70051 -36.21515 -34.23316 -33.98049 -32.57159 -32.18758 -31.62517 -29.62524 -27.54724 -26.83543 -25.45089 -24.92959 -24.19966 -22.11523 -21.59129 -21.19246 -19.61359 -19.07122 -18.97714 -18.60089 -17.99219 -17.37893 -17.19871 -16.62827 -16.44678 -16.02966 -15.47070 -15.08164 -14.97700 -14.92167 -14.76784 -14.62971 -14.57953 -14.41742 -13.82540 -13.71579 -13.47531 -13.28867 -12.98413 -12.84315 -12.55009 -12.45833 -12.34276 -12.28146 -12.19978 -11.99605 -11.95782 -11.37023 -11.10965 -10.81161 -10.66812 -10.57124 -10.37959 -10.25573 -9.65629 -8.25429 -6.40763 -0.73058 -0.69274 0.89435 1.01271 1.41673 1.45972 1.51075 1.54672 1.87158 2.33168 2.39527 2.63085 2.79102 3.01385 3.12700 3.36403 3.42440 3.52008 3.75026 3.88676 4.06636 4.17543 4.19826 4.27662 4.32972 4.35246 4.38726 4.50836 4.56849 4.71973 4.86831 4.93150 5.03714 5.05111 5.09386 5.11888 5.20637 5.34975 5.39319 5.52365 5.75416 6.06320 6.17844 6.50240 6.66969 6.95400 6.97420 7.27790 7.34617 8.79528 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.019166 B = 0.003158 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.575322 B = 8864.185748 C = 9743.585222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.050 4.050 3 C 0.094 3.906 4 N -0.334 5.334 5 O 0.065 5.935 6 C 0.215 3.785 7 N -0.478 5.478 8 C 0.219 3.781 9 C -0.196 4.196 10 C 0.571 3.429 11 O -0.579 6.579 12 N -0.605 5.605 13 C 0.090 3.910 14 C -0.112 4.112 15 C 0.233 3.767 16 O -0.583 6.583 17 C -0.558 4.558 18 H 0.067 0.933 19 C 0.029 3.971 20 N -0.912 5.912 21 Si 0.957 3.043 22 H -0.282 1.282 23 H -0.283 1.283 24 H -0.266 1.266 25 C 0.125 3.875 26 C 0.044 3.956 27 C -0.227 4.227 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.196 0.804 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.374 0.626 39 H 0.269 0.731 40 H 0.039 0.961 41 H 0.037 0.963 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.999 -4.207 -17.401 18.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.077 4.077 4 N -0.044 5.044 5 O 0.013 5.987 6 C 0.033 3.967 7 N -0.195 5.195 8 C 0.054 3.946 9 C -0.202 4.202 10 C 0.360 3.640 11 O -0.461 6.461 12 N -0.336 5.336 13 C -0.031 4.031 14 C -0.150 4.150 15 C 0.193 3.807 16 O -0.390 6.390 17 C -0.596 4.596 18 H 0.085 0.915 19 C -0.172 4.172 20 N -0.551 5.551 21 Si 0.783 3.217 22 H -0.208 1.208 23 H -0.208 1.208 24 H -0.190 1.190 25 C 0.002 3.998 26 C 0.016 3.984 27 C -0.232 4.232 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.213 0.787 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.116 0.884 38 H 0.223 0.777 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -1.788 -3.186 -19.334 19.676 hybrid contribution 0.139 0.143 2.932 2.939 sum -1.649 -3.043 -16.402 16.763 Atomic orbital electron populations 1.21767 0.92763 1.04092 1.02025 1.20371 0.97117 0.84599 1.06701 1.24931 0.97917 0.99472 0.85340 1.73502 1.15314 0.91824 1.23766 1.84895 1.67763 1.26736 1.19346 1.22066 0.96026 0.91969 0.86654 1.66577 1.19114 1.28822 1.04958 1.23220 0.88049 0.96451 0.86856 1.20720 1.08945 0.97276 0.93213 1.17810 0.77091 0.82312 0.86791 1.90779 1.52576 1.35293 1.67428 1.48820 1.69524 1.06360 1.08940 1.22990 1.01829 0.81543 0.96711 1.22776 0.99779 1.00107 0.92326 1.19694 0.82203 0.85762 0.93087 1.86102 1.35987 1.69493 1.47457 1.21843 1.07433 1.36250 0.94114 0.91502 1.25739 0.96568 0.93475 1.01431 1.69873 1.28576 1.33154 1.23497 0.85549 0.78691 0.78689 0.78744 1.20784 1.20843 1.18993 1.22638 0.99236 1.00591 0.77329 1.21825 0.88143 0.98697 0.89689 1.20973 1.10063 0.96340 0.95839 0.93156 0.88916 0.92617 0.87709 0.86322 0.78697 0.87700 0.88771 0.89883 0.88378 0.77729 0.92158 0.94270 0.94453 0.79408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.89 71.98 0.71 -0.78 16 2 C -0.05 -0.53 6.55 29.85 0.20 -0.33 16 3 C 0.09 1.74 6.84 45.02 0.31 2.04 16 4 N -0.33 -7.65 11.94 -43.54 -0.52 -8.17 16 5 O 0.07 1.67 11.12 67.79 0.75 2.42 16 6 C 0.21 5.56 8.75 85.35 0.75 6.31 16 7 N -0.48 -12.93 10.36 -307.28 -3.18 -16.12 16 8 C 0.22 5.73 10.73 85.18 0.91 6.64 16 9 C -0.20 -5.28 5.74 -19.94 -0.11 -5.39 16 10 C 0.57 20.27 7.67 86.75 0.67 20.93 16 11 O -0.58 -25.24 16.96 -3.93 -0.07 -25.31 16 12 N -0.61 -21.68 3.33 -814.60 -2.71 -24.40 16 13 C 0.09 2.39 5.02 86.85 0.44 2.83 16 14 C -0.11 -3.65 6.23 31.98 0.20 -3.45 16 15 C 0.23 10.17 0.86 -10.35 -0.01 10.16 16 16 O -0.58 -26.33 13.08 -148.98 -1.95 -28.28 16 17 C -0.56 -27.31 8.11 25.60 0.21 -27.11 16 18 H 0.07 3.20 7.79 -2.91 -0.02 3.17 16 19 C 0.03 1.46 5.25 84.65 0.44 1.90 16 20 N -0.91 -47.24 10.98 21.45 0.24 -47.01 16 21 Si 0.96 40.21 29.54 68.60 2.03 42.24 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 25 C 0.12 5.65 5.14 86.67 0.45 6.10 16 26 C 0.04 0.93 8.10 22.77 0.18 1.11 16 27 C -0.23 -4.91 6.55 -20.25 -0.13 -5.05 16 28 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 32 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.20 4.67 7.84 -2.91 -0.02 4.64 16 34 H 0.11 2.04 6.07 -2.39 -0.01 2.02 16 35 H 0.09 2.14 7.34 -2.38 -0.02 2.12 16 36 H 0.08 2.64 8.04 -2.38 -0.02 2.62 16 37 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 38 H 0.37 17.93 7.65 -74.06 -0.57 17.36 16 39 H 0.27 13.47 8.31 -92.71 -0.77 12.70 16 40 H 0.04 2.00 7.87 -2.39 -0.02 1.98 16 41 H 0.04 1.92 7.81 -2.39 -0.02 1.90 16 42 H 0.19 3.05 4.55 -2.91 -0.01 3.04 16 Total: -1.00 -63.61 352.17 0.30 -63.30 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.52 Total: 25.39 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 5.20 Total: 15.93 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -6.18 Total: -95.69 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -1.26 Total: -51.16 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -63.61 0.30 -63.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.559 kcal (2) G-P(sol) polarization free energy of solvation -63.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds