Wall clock time and date at job start Tue Mar 31 2020 16:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47064 * 2 1 4 4 C 1.52999 * 109.46994 * 240.00255 * 2 1 3 5 5 O 1.45198 * 109.47442 * 119.99797 * 2 1 3 6 6 C 1.34683 * 116.99963 * 60.00463 * 5 2 1 7 7 O 1.21425 * 119.99861 * 359.97438 * 6 5 2 8 8 C 1.48154 * 119.99896 * 180.27815 * 6 5 2 9 9 C 1.39413 * 119.56635 * 179.72200 * 8 6 5 10 10 C 1.38375 * 119.19589 * 179.97438 * 9 8 6 11 11 C 1.39978 * 118.35584 * 0.02562 * 10 9 8 12 12 C 1.47820 * 120.46564 * 179.97438 * 11 10 9 13 13 O 1.21586 * 120.00333 * 48.17417 * 12 11 10 14 14 N 1.34778 * 119.99913 * 228.17957 * 12 11 10 15 15 C 1.36690 * 119.99853 * 183.15241 * 14 12 11 16 16 H 1.08003 * 120.00352 * 352.70479 * 15 14 12 17 17 C 1.39183 * 119.99848 * 172.70461 * 15 14 12 18 18 N 1.31278 * 119.99647 * 333.34577 * 17 15 14 19 19 Si 1.86794 * 120.00070 * 153.35168 * 17 15 14 20 20 H 1.48502 * 109.47179 * 59.99708 * 19 17 15 21 21 H 1.48497 * 109.47239 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47106 * 299.99754 * 19 17 15 23 23 C 1.46503 * 119.99674 * 3.15473 * 14 12 11 24 24 C 1.47195 * 109.47015 * 266.15191 * 23 14 12 25 25 N 7.81141 * 111.72072 * 98.16889 * 2 1 3 26 26 C 1.39855 * 119.07096 * 359.97438 * 11 10 9 27 27 N 1.31366 * 120.70965 * 359.74800 * 26 11 10 28 28 H 1.09006 * 109.46898 * 299.99558 * 1 2 3 29 29 H 1.08994 * 109.47370 * 60.00248 * 1 2 3 30 30 H 1.09001 * 109.46784 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46972 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46550 * 300.00174 * 3 2 1 33 33 H 1.09002 * 109.46857 * 59.99935 * 3 2 1 34 34 H 1.09004 * 109.46850 * 299.99738 * 4 2 1 35 35 H 1.08994 * 109.47473 * 59.99559 * 4 2 1 36 36 H 1.08999 * 109.47128 * 180.02562 * 4 2 1 37 37 H 1.08006 * 120.39854 * 359.95283 * 9 8 6 38 38 H 1.08001 * 120.82102 * 180.02562 * 10 9 8 39 39 H 0.97004 * 119.99647 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.47525 * 26.16070 * 23 14 12 41 41 H 1.09002 * 109.46663 * 146.16138 * 23 14 12 42 42 H 1.07996 * 119.65040 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6844 1.1855 6 6 1.6523 -1.9727 1.3384 7 8 0.9515 -2.5095 0.5046 8 6 2.1039 -2.7329 2.5271 9 6 1.7193 -4.0643 2.6792 10 6 2.1459 -4.7672 3.7921 11 6 2.9520 -4.1069 4.7268 12 6 3.4335 -4.8130 5.9328 13 8 3.9377 -5.9148 5.8316 14 7 3.3135 -4.2357 7.1447 15 6 3.8165 -4.8598 8.2519 16 1 4.2039 -5.8651 8.1760 17 6 3.8296 -4.1997 9.4772 18 7 3.8723 -2.8881 9.5157 19 14 3.7863 -5.1799 11.0667 20 1 4.9698 -6.0749 11.1287 21 1 3.8093 -4.2488 12.2233 22 1 2.5461 -5.9954 11.1118 23 6 2.6438 -2.9392 7.2753 24 6 3.6457 -1.8621 7.2239 25 7 4.4209 -1.0311 7.1832 26 6 3.2953 -2.7696 4.5036 27 7 2.8742 -2.1389 3.4310 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2491 37 1 1.0956 -4.5411 1.9374 38 1 1.8640 -5.7998 3.9360 39 1 3.8810 -2.4281 10.3697 40 1 1.9328 -2.8136 6.4587 41 1 2.1146 -2.8980 8.2274 42 1 3.9164 -2.2510 5.2189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593065273.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:59 Heat of formation + Delta-G solvation = -30.963716 kcal Electronic energy + Delta-G solvation = -28034.652863 eV Core-core repulsion = 23981.479399 eV Total energy + Delta-G solvation = -4053.173465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08140 -40.16328 -38.51696 -37.01551 -36.05950 -34.50429 -34.20607 -32.52627 -32.30856 -31.22667 -27.72782 -27.59488 -27.58568 -26.36314 -24.58631 -23.54531 -22.30561 -20.13864 -19.79850 -18.27501 -18.00310 -17.21568 -16.87552 -16.49647 -16.12105 -16.08512 -15.23802 -15.07848 -14.61262 -14.45583 -14.40777 -13.84555 -13.80640 -13.48092 -13.25520 -13.22970 -12.93345 -12.65371 -12.39560 -12.37990 -12.12942 -12.08918 -12.07469 -11.75628 -11.64374 -11.47485 -11.37544 -11.26381 -10.72208 -10.58251 -10.52616 -10.51711 -10.29556 -9.89463 -9.70376 -9.46396 -9.15877 -8.77437 -8.39175 -6.80206 -4.15125 0.37641 1.25897 2.29652 2.46455 2.98634 3.10623 3.12739 3.36272 3.53923 3.82038 3.87711 3.93098 4.11713 4.45505 4.51386 4.57100 4.64619 4.69103 4.73607 4.90829 4.98276 5.07483 5.16570 5.28244 5.32569 5.37529 5.50499 5.51170 5.61772 5.62691 5.69593 5.81224 5.83468 5.98863 6.04366 6.07708 6.16106 6.30423 6.35578 6.53168 7.22035 7.53630 7.58906 7.91635 8.02214 8.61633 8.73295 8.90998 9.45176 10.23790 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022660 B = 0.002909 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.362719 B = 9623.306587 C =10431.815992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.113 3.887 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.324 6.324 6 C 0.532 3.468 7 O -0.500 6.500 8 C 0.077 3.923 9 C -0.106 4.106 10 C -0.049 4.049 11 C -0.111 4.111 12 C 0.473 3.527 13 O -0.566 6.566 14 N -0.418 5.418 15 C -0.318 4.318 16 H 0.119 0.881 17 C 0.038 3.962 18 N -0.857 5.857 19 Si 0.931 3.069 20 H -0.270 1.270 21 H -0.282 1.282 22 H -0.268 1.268 23 C 0.214 3.786 24 C 0.245 3.755 25 N -0.458 5.458 26 C 0.108 3.892 27 N -0.430 5.430 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.281 0.719 40 H 0.085 0.915 41 H 0.129 0.871 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.058 4.710 -13.568 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.076 3.924 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.240 6.240 6 C 0.376 3.624 7 O -0.388 6.388 8 C -0.060 4.060 9 C -0.126 4.126 10 C -0.075 4.075 11 C -0.117 4.117 12 C 0.262 3.738 13 O -0.449 6.449 14 N -0.136 5.136 15 C -0.444 4.444 16 H 0.136 0.864 17 C -0.169 4.169 18 N -0.493 5.493 19 Si 0.757 3.243 20 H -0.195 1.195 21 H -0.208 1.208 22 H -0.193 1.193 23 C 0.087 3.913 24 C -0.073 4.073 25 N -0.139 5.139 26 C -0.054 4.054 27 N -0.141 5.141 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.170 0.830 38 H 0.171 0.829 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.146 0.854 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.644 6.308 -13.927 17.093 hybrid contribution -0.434 -1.324 1.036 1.736 sum -8.078 4.984 -12.891 16.009 Atomic orbital electron populations 1.22495 0.93987 1.04726 1.02790 1.22255 0.94469 0.92528 0.83098 1.21836 1.02455 0.92416 1.03003 1.22497 1.01878 1.03070 0.96580 1.86764 1.68807 1.24040 1.44341 1.20744 0.76698 0.80603 0.84345 1.90731 1.35411 1.70356 1.42343 1.20122 0.99833 0.91764 0.94239 1.21985 0.99242 0.93143 0.98261 1.21683 0.93627 1.00712 0.91491 1.21665 0.96978 0.95098 0.97918 1.17557 0.86512 0.87842 0.81909 1.90677 1.49015 1.20470 1.84785 1.43611 1.48098 1.15469 1.06381 1.19811 1.40033 1.00473 0.84101 0.86352 1.25375 0.95773 0.95480 1.00241 1.69769 1.43783 1.07550 1.28246 0.85896 0.79633 0.79356 0.79447 1.19460 1.20779 1.19344 1.18969 0.89502 0.78357 1.04461 1.28918 0.94660 0.93564 0.90139 1.81011 1.08735 1.11983 1.12127 1.23440 0.96940 0.90972 0.94039 1.67642 1.07546 1.37745 1.01174 0.91831 0.91061 0.89807 0.91319 0.90432 0.91269 0.89815 0.91049 0.91882 0.83032 0.82916 0.90783 0.89740 0.85372 0.81510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.37 37.16 0.31 -1.48 16 2 C 0.11 1.22 1.13 -90.62 -0.10 1.12 16 3 C -0.14 -1.21 8.85 37.16 0.33 -0.88 16 4 C -0.18 -1.82 8.37 37.16 0.31 -1.51 16 5 O -0.32 -4.60 9.70 -40.45 -0.39 -4.99 16 6 C 0.53 7.80 7.26 34.80 0.25 8.05 16 7 O -0.50 -7.21 11.85 -19.21 -0.23 -7.43 16 8 C 0.08 1.19 6.75 -82.94 -0.56 0.63 16 9 C -0.11 -1.44 9.62 -39.09 -0.38 -1.82 16 10 C -0.05 -0.72 9.87 -38.88 -0.38 -1.11 16 11 C -0.11 -1.99 4.76 -104.72 -0.50 -2.49 16 12 C 0.47 10.30 7.20 -12.34 -0.09 10.21 16 13 O -0.57 -14.12 16.61 5.29 0.09 -14.03 16 14 N -0.42 -9.25 2.58 -119.03 -0.31 -9.56 16 15 C -0.32 -7.66 9.41 -15.04 -0.14 -7.80 16 16 H 0.12 3.01 7.30 -52.48 -0.38 2.63 16 17 C 0.04 0.86 4.88 -17.44 -0.09 0.78 16 18 N -0.86 -19.98 9.02 55.51 0.50 -19.48 16 19 Si 0.93 18.24 29.63 -169.99 -5.04 13.20 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 23 C 0.21 4.11 4.76 -6.83 -0.03 4.08 16 24 C 0.24 5.20 10.20 -20.72 -0.21 4.99 16 25 N -0.46 -10.49 18.31 42.20 0.77 -9.72 16 26 C 0.11 1.94 8.90 -17.15 -0.15 1.79 16 27 N -0.43 -7.45 10.10 -9.47 -0.10 -7.55 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.96 5.88 -51.93 -0.31 0.65 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.97 5.88 -51.93 -0.31 0.66 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.15 1.69 7.63 -52.48 -0.40 1.29 16 38 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 39 H 0.28 6.33 8.31 -40.82 -0.34 5.99 16 40 H 0.08 1.35 6.12 -51.93 -0.32 1.03 16 41 H 0.13 2.44 6.55 -51.93 -0.34 2.10 16 42 H 0.17 3.27 4.57 -52.49 -0.24 3.03 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -28.92 356.73 -5.56 -34.48 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -4.81 Total: 5.15 kcal Atomic # 6 Polarization: 15.98 SS G_CDS: -1.43 Total: 14.55 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.87 Total: -46.31 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.53 Total: -26.45 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.04 Total: 13.20 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.92 -5.56 -34.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593065273.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.512 kcal (2) G-P(sol) polarization free energy of solvation -28.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds