Wall clock time and date at job start Tue Mar 31 2020 16:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47064 * 2 1 4 4 C 1.52999 * 109.46994 * 240.00255 * 2 1 3 5 5 O 1.45198 * 109.47442 * 119.99797 * 2 1 3 6 6 C 1.34683 * 116.99963 * 60.00463 * 5 2 1 7 7 O 1.21425 * 119.99861 * 359.97438 * 6 5 2 8 8 C 1.48154 * 119.99896 * 180.27815 * 6 5 2 9 9 C 1.39413 * 119.56635 * 179.72200 * 8 6 5 10 10 C 1.38375 * 119.19589 * 179.97438 * 9 8 6 11 11 C 1.39978 * 118.35584 * 0.02562 * 10 9 8 12 12 C 1.47820 * 120.46564 * 179.97438 * 11 10 9 13 13 O 1.21586 * 120.00333 * 48.17417 * 12 11 10 14 14 N 1.34778 * 119.99913 * 228.17957 * 12 11 10 15 15 C 1.36690 * 119.99853 * 183.15241 * 14 12 11 16 16 H 1.08003 * 120.00352 * 352.70479 * 15 14 12 17 17 C 1.39183 * 119.99848 * 172.70461 * 15 14 12 18 18 N 1.31278 * 119.99647 * 333.34577 * 17 15 14 19 19 Si 1.86794 * 120.00070 * 153.35168 * 17 15 14 20 20 H 1.48502 * 109.47179 * 59.99708 * 19 17 15 21 21 H 1.48497 * 109.47239 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47106 * 299.99754 * 19 17 15 23 23 C 1.46503 * 119.99674 * 3.15473 * 14 12 11 24 24 C 1.47195 * 109.47015 * 266.15191 * 23 14 12 25 25 N 7.81141 * 111.72072 * 98.16889 * 2 1 3 26 26 C 1.39855 * 119.07096 * 359.97438 * 11 10 9 27 27 N 1.31366 * 120.70965 * 359.74800 * 26 11 10 28 28 H 1.09006 * 109.46898 * 299.99558 * 1 2 3 29 29 H 1.08994 * 109.47370 * 60.00248 * 1 2 3 30 30 H 1.09001 * 109.46784 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46972 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46550 * 300.00174 * 3 2 1 33 33 H 1.09002 * 109.46857 * 59.99935 * 3 2 1 34 34 H 1.09004 * 109.46850 * 299.99738 * 4 2 1 35 35 H 1.08994 * 109.47473 * 59.99559 * 4 2 1 36 36 H 1.08999 * 109.47128 * 180.02562 * 4 2 1 37 37 H 1.08006 * 120.39854 * 359.95283 * 9 8 6 38 38 H 1.08001 * 120.82102 * 180.02562 * 10 9 8 39 39 H 0.97004 * 119.99647 * 179.97438 * 18 17 15 40 40 H 1.09000 * 109.47525 * 26.16070 * 23 14 12 41 41 H 1.09002 * 109.46663 * 146.16138 * 23 14 12 42 42 H 1.07996 * 119.65040 * 179.97438 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6844 1.1855 6 6 1.6523 -1.9727 1.3384 7 8 0.9515 -2.5095 0.5046 8 6 2.1039 -2.7329 2.5271 9 6 1.7193 -4.0643 2.6792 10 6 2.1459 -4.7672 3.7921 11 6 2.9520 -4.1069 4.7268 12 6 3.4335 -4.8130 5.9328 13 8 3.9377 -5.9148 5.8316 14 7 3.3135 -4.2357 7.1447 15 6 3.8165 -4.8598 8.2519 16 1 4.2039 -5.8651 8.1760 17 6 3.8296 -4.1997 9.4772 18 7 3.8723 -2.8881 9.5157 19 14 3.7863 -5.1799 11.0667 20 1 4.9698 -6.0749 11.1287 21 1 3.8093 -4.2488 12.2233 22 1 2.5461 -5.9954 11.1118 23 6 2.6438 -2.9392 7.2753 24 6 3.6457 -1.8621 7.2239 25 7 4.4209 -1.0311 7.1832 26 6 3.2953 -2.7696 4.5036 27 7 2.8742 -2.1389 3.4310 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7216 -1.2491 37 1 1.0956 -4.5411 1.9374 38 1 1.8640 -5.7998 3.9360 39 1 3.8810 -2.4281 10.3697 40 1 1.9328 -2.8136 6.4587 41 1 2.1146 -2.8980 8.2274 42 1 3.9164 -2.2510 5.2189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593065273.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:58 Heat of formation + Delta-G solvation = -47.105805 kcal Electronic energy + Delta-G solvation = -28035.352837 eV Core-core repulsion = 23981.479399 eV Total energy + Delta-G solvation = -4053.873438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.25519 -41.48167 -40.04288 -38.05840 -37.80468 -36.25324 -35.13800 -34.11437 -33.69723 -32.62283 -29.37465 -28.35471 -28.29630 -27.83738 -26.10524 -24.83838 -23.49047 -21.59248 -20.88364 -20.00894 -19.16138 -18.69326 -18.22967 -17.95515 -17.31493 -17.18422 -16.79253 -16.36174 -16.09675 -15.71314 -15.48736 -15.28649 -14.92623 -14.80973 -14.65292 -14.55535 -14.28219 -14.00271 -13.66808 -13.46625 -13.36937 -13.14187 -13.11745 -12.93009 -12.91972 -12.86880 -12.49914 -12.36117 -12.31087 -12.25575 -12.12492 -11.41011 -11.35816 -11.21204 -11.19676 -11.03338 -10.56393 -10.33237 -10.15917 -8.55494 -5.99685 -0.89718 -0.00033 1.05805 1.41212 1.44369 1.49419 1.58345 1.76148 1.90391 2.16526 2.29661 2.56182 2.77230 2.86505 3.02023 3.39653 3.55636 3.65679 3.68164 3.73177 3.80143 3.80618 3.95675 4.03355 4.30936 4.46904 4.54596 4.63191 4.66940 4.74162 4.77765 4.82664 4.88009 4.89338 4.93424 5.11777 5.24962 5.27326 5.28140 5.40334 5.40613 5.83085 6.24748 6.34639 6.72947 6.91928 6.96652 7.16779 7.71868 8.47172 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022660 B = 0.002909 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.362719 B = 9623.306587 C =10431.815992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.099 3.901 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.340 6.340 6 C 0.532 3.468 7 O -0.497 6.497 8 C 0.076 3.924 9 C -0.086 4.086 10 C -0.031 4.031 11 C -0.126 4.126 12 C 0.475 3.525 13 O -0.604 6.604 14 N -0.428 5.428 15 C -0.351 4.351 16 H 0.095 0.905 17 C 0.015 3.985 18 N -0.874 5.874 19 Si 0.991 3.009 20 H -0.279 1.279 21 H -0.277 1.277 22 H -0.260 1.260 23 C 0.219 3.781 24 C 0.258 3.742 25 N -0.492 5.492 26 C 0.107 3.893 27 N -0.445 5.445 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.185 0.815 38 H 0.175 0.825 39 H 0.283 0.717 40 H 0.119 0.881 41 H 0.131 0.869 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.885 5.065 -15.211 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.064 3.936 3 C -0.194 4.194 4 C -0.236 4.236 5 O -0.257 6.257 6 C 0.376 3.624 7 O -0.385 6.385 8 C -0.061 4.061 9 C -0.106 4.106 10 C -0.058 4.058 11 C -0.131 4.131 12 C 0.265 3.735 13 O -0.491 6.491 14 N -0.145 5.145 15 C -0.477 4.477 16 H 0.113 0.887 17 C -0.190 4.190 18 N -0.510 5.510 19 Si 0.814 3.186 20 H -0.204 1.204 21 H -0.202 1.202 22 H -0.184 1.184 23 C 0.092 3.908 24 C -0.059 4.059 25 N -0.173 5.173 26 C -0.054 4.054 27 N -0.156 5.156 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.203 0.797 38 H 0.192 0.808 39 H 0.093 0.907 40 H 0.136 0.864 41 H 0.149 0.851 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.485 6.696 -15.579 19.430 hybrid contribution 0.105 -1.381 1.334 1.923 sum -9.380 5.314 -14.245 17.865 Atomic orbital electron populations 1.22464 0.93131 1.03971 1.03998 1.22682 0.95308 0.93340 0.82265 1.21882 1.02170 0.91156 1.04235 1.22469 1.01623 1.02290 0.97255 1.86751 1.69057 1.23767 1.46078 1.20585 0.76817 0.80965 0.84071 1.90739 1.35251 1.70445 1.42115 1.20533 0.98855 0.92720 0.93983 1.22264 0.98240 0.92109 0.98006 1.21926 0.91935 1.01422 0.90478 1.21331 0.99290 0.95179 0.97349 1.18078 0.85339 0.87326 0.82733 1.90638 1.50508 1.22247 1.85667 1.43702 1.48320 1.16284 1.06186 1.19702 1.42310 1.00156 0.85580 0.88699 1.25982 0.94747 0.96162 1.02101 1.69828 1.44050 1.08351 1.28803 0.85024 0.79368 0.78000 0.76206 1.20419 1.20224 1.18408 1.19158 0.89117 0.76536 1.05960 1.29296 0.94325 0.93284 0.88999 1.80994 1.09660 1.13196 1.13496 1.23064 0.97240 0.90846 0.94261 1.67619 1.08426 1.38204 1.01369 0.92036 0.88482 0.91435 0.91832 0.87562 0.91664 0.91485 0.88431 0.92266 0.79742 0.80791 0.90651 0.86366 0.85138 0.83429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 8.37 71.98 0.60 -2.48 16 2 C 0.10 1.95 1.13 -10.79 -0.01 1.94 16 3 C -0.14 -2.08 8.85 71.98 0.64 -1.44 16 4 C -0.18 -3.17 8.37 71.98 0.60 -2.57 16 5 O -0.34 -9.23 9.70 -55.93 -0.54 -9.77 16 6 C 0.53 14.65 7.26 70.46 0.51 15.16 16 7 O -0.50 -13.23 11.85 20.08 0.24 -12.99 16 8 C 0.08 2.20 6.75 41.92 0.28 2.48 16 9 C -0.09 -2.09 9.62 22.59 0.22 -1.87 16 10 C -0.03 -0.86 9.87 22.72 0.22 -0.63 16 11 C -0.13 -4.44 4.76 -19.93 -0.09 -4.53 16 12 C 0.48 20.96 7.20 86.78 0.62 21.58 16 13 O -0.60 -30.82 16.61 -3.99 -0.07 -30.88 16 14 N -0.43 -19.26 2.58 -648.76 -1.68 -20.93 16 15 C -0.35 -17.36 9.41 84.16 0.79 -16.57 16 16 H 0.10 5.05 7.30 -2.91 -0.02 5.03 16 17 C 0.02 0.69 4.88 85.00 0.41 1.11 16 18 N -0.87 -41.00 9.02 21.70 0.20 -40.80 16 19 Si 0.99 37.52 29.63 68.60 2.03 39.55 16 20 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 21 H -0.28 -10.19 7.11 99.48 0.71 -9.48 16 22 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 23 C 0.22 8.40 4.76 84.57 0.40 8.81 16 24 C 0.26 11.12 10.20 89.43 0.91 12.03 16 25 N -0.49 -22.99 18.31 20.02 0.37 -22.63 16 26 C 0.11 3.84 8.90 85.15 0.76 4.60 16 27 N -0.45 -15.06 10.10 -183.88 -1.86 -16.92 16 28 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.40 5.88 -2.39 -0.01 1.39 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.42 5.88 -2.39 -0.01 1.41 16 35 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.19 3.32 7.63 -2.91 -0.02 3.29 16 38 H 0.17 4.06 8.06 -2.91 -0.02 4.03 16 39 H 0.28 12.72 8.31 -92.71 -0.77 11.95 16 40 H 0.12 3.68 6.12 -2.39 -0.01 3.67 16 41 H 0.13 4.96 6.55 -2.39 -0.02 4.94 16 42 H 0.15 5.90 4.57 -2.91 -0.01 5.89 16 Total: -1.00 -63.81 356.73 6.64 -57.17 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 1.08 Total: 20.59 kcal Atomic # 6 Polarization: 30.73 SS G_CDS: 6.88 Total: 37.61 kcal Atomic # 7 Polarization: -98.31 SS G_CDS: -2.97 Total: -101.28 kcal Atomic # 8 Polarization: -53.27 SS G_CDS: -0.37 Total: -53.64 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.55 kcal Total: -63.81 6.64 -57.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593065273.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.061 kcal (2) G-P(sol) polarization free energy of solvation -63.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds