Wall clock time and date at job start Tue Mar 31 2020 16:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 119.99374 * 2 1 4 4 N 1.46903 * 109.47222 * 125.00195 * 3 2 1 5 5 C 1.46902 * 110.99612 * 288.21922 * 4 3 2 6 6 C 1.50706 * 109.47407 * 160.67220 * 5 4 3 7 7 H 1.07996 * 119.99549 * 1.27754 * 6 5 4 8 8 C 1.37873 * 119.99896 * 181.28473 * 6 5 4 9 9 N 1.31512 * 120.00576 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99761 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47246 * 59.99549 * 10 8 6 12 12 H 1.48497 * 109.47175 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47172 * 300.00005 * 10 8 6 14 14 C 1.46891 * 111.00746 * 164.26037 * 4 3 2 15 15 C 1.50703 * 109.47295 * 293.95687 * 14 4 3 16 16 C 1.38757 * 120.01699 * 94.99343 * 15 14 4 17 17 C 1.38642 * 118.02173 * 179.97438 * 16 15 14 18 18 C 1.39272 * 117.91844 * 0.02562 * 17 16 15 19 19 O 1.35690 * 120.13818 * 179.97438 * 18 17 16 20 20 C 1.42898 * 116.99720 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.46873 * 179.97438 * 20 19 18 22 22 F 1.39907 * 109.46835 * 60.00128 * 21 20 19 23 23 F 1.39900 * 109.47391 * 179.97438 * 21 20 19 24 24 F 1.39900 * 109.47499 * 300.00166 * 21 20 19 25 25 N 1.32339 * 119.71874 * 359.97438 * 18 17 16 26 26 N 1.28346 * 122.10748 * 359.97438 * 25 18 17 27 27 H 1.08000 * 120.00289 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.00156 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.00039 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47683 * 4.99418 * 3 2 1 31 31 H 1.09001 * 109.46782 * 244.99362 * 3 2 1 32 32 H 1.09006 * 109.46873 * 280.66948 * 5 4 3 33 33 H 1.08997 * 109.47666 * 40.66660 * 5 4 3 34 34 H 0.96996 * 120.00643 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.47496 * 173.95150 * 14 4 3 36 36 H 1.09001 * 109.47223 * 53.95051 * 14 4 3 37 37 H 1.07997 * 120.98942 * 359.97438 * 16 15 14 38 38 H 1.08002 * 121.04119 * 179.72563 * 17 16 15 39 39 H 1.09004 * 109.47323 * 299.99849 * 20 19 18 40 40 H 1.08996 * 109.47465 * 60.00289 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9962 1.3321 1.1345 5 6 2.2752 1.4841 2.4053 6 6 3.1608 1.0416 3.5415 7 1 4.1666 0.7028 3.3417 8 6 2.6870 1.0692 4.8360 9 7 1.4623 1.4821 5.0794 10 14 3.7846 0.5200 6.2442 11 1 4.9983 1.3744 6.2881 12 1 3.0447 0.6438 7.5258 13 1 4.1831 -0.8957 6.0382 14 6 3.9980 2.3933 0.9674 15 6 4.8782 2.0720 -0.2129 16 6 4.5885 2.6057 -1.4605 17 6 5.4261 2.2833 -2.5173 18 6 6.5063 1.4427 -2.2602 19 8 7.3544 1.0975 -3.2616 20 6 8.4401 0.2324 -2.9229 21 6 9.2806 -0.0438 -4.1712 22 9 9.7837 1.1624 -4.6707 23 9 10.3439 -0.8903 -3.8396 24 9 8.4832 -0.6552 -5.1446 25 7 6.7021 0.9820 -1.0352 26 7 5.9242 1.2845 -0.0602 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3584 2.1316 0.0895 31 1 2.6212 1.4026 -0.9314 32 1 2.0008 2.5298 2.5446 33 1 1.3739 0.8714 2.3873 34 1 1.1291 1.5019 5.9901 35 1 4.6084 2.4619 1.8678 36 1 3.4944 3.3448 0.7965 37 1 3.7361 3.2531 -1.6041 38 1 5.2437 2.6680 -3.5099 39 1 9.0612 0.7086 -2.1642 40 1 8.0481 -0.7075 -2.5342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593990891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:15 Heat of formation + Delta-G solvation = -98.648066 kcal Electronic energy + Delta-G solvation = -27687.239678 eV Core-core repulsion = 23089.274459 eV Total energy + Delta-G solvation = -4597.965218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.51831 -48.06697 -47.97790 -41.39868 -39.07927 -37.22630 -33.60409 -33.27681 -32.78606 -31.62094 -30.19872 -27.52816 -26.77688 -25.13469 -24.17168 -23.36359 -22.69928 -20.66733 -19.68191 -19.24124 -19.06138 -18.52418 -18.19924 -17.15112 -16.65435 -16.39581 -15.97449 -15.27328 -14.94790 -14.89020 -14.60598 -14.43171 -14.40462 -14.25349 -14.21143 -14.14700 -14.13947 -13.93701 -13.79506 -13.29791 -12.80245 -12.20969 -12.17911 -12.02658 -11.78377 -11.56250 -11.23142 -10.98543 -10.68958 -10.63484 -10.53342 -10.34979 -9.97157 -9.63571 -9.34270 -9.15605 -8.87236 -8.41407 -7.43278 -6.01772 -4.02860 0.66685 0.89200 1.73724 2.55648 2.71337 3.28855 3.36663 3.40069 3.43254 3.45208 3.56347 3.80663 3.97007 4.25076 4.44370 4.50679 4.58632 4.69098 4.76861 4.93032 4.98705 5.33935 5.34210 5.41343 5.56980 5.60870 5.80561 5.83576 6.00966 6.10339 6.30489 6.36947 6.54398 7.01801 7.11882 7.14475 7.26660 7.80087 7.99784 8.09886 8.47342 8.66321 9.05734 9.61659 11.08686 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.014491 B = 0.002636 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.752829 B =10621.516440 C =11675.002977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.124 4.124 3 C 0.073 3.927 4 N -0.523 5.523 5 C 0.195 3.805 6 C -0.506 4.506 7 H 0.067 0.933 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.113 3.887 15 C 0.072 3.928 16 C -0.081 4.081 17 C -0.129 4.129 18 C 0.246 3.754 19 O -0.291 6.291 20 C 0.023 3.977 21 C 0.465 3.535 22 F -0.175 7.175 23 F -0.170 7.170 24 F -0.174 7.174 25 N -0.299 5.299 26 N -0.177 5.177 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.033 0.967 31 H 0.063 0.937 32 H -0.006 1.006 33 H 0.039 0.961 34 H 0.261 0.739 35 H 0.109 0.891 36 H 0.046 0.954 37 H 0.157 0.843 38 H 0.156 0.844 39 H 0.117 0.883 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.526 1.455 -19.559 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.142 4.142 3 C -0.055 4.055 4 N -0.248 5.248 5 C 0.071 3.929 6 C -0.545 4.545 7 H 0.085 0.915 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.201 1.201 14 C -0.016 4.016 15 C -0.075 4.075 16 C -0.110 4.110 17 C -0.158 4.158 18 C 0.061 3.939 19 O -0.196 6.196 20 C -0.054 4.054 21 C 0.410 3.590 22 F -0.157 7.157 23 F -0.151 7.151 24 F -0.156 7.156 25 N -0.153 5.153 26 N -0.020 5.020 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.011 0.989 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.127 0.873 36 H 0.064 0.936 37 H 0.175 0.825 38 H 0.173 0.827 39 H 0.135 0.865 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.642 0.162 -18.727 21.541 hybrid contribution -0.584 1.084 -0.256 1.257 sum 10.059 1.246 -18.983 21.519 Atomic orbital electron populations 1.23701 0.95914 1.01284 1.03071 1.22796 0.95362 0.98596 0.97457 1.21296 0.94543 0.94748 0.94892 1.62112 1.14831 1.44423 1.03457 1.19797 0.94077 0.95576 0.83456 1.21157 1.00131 1.42905 0.90317 0.91528 1.24963 0.95133 0.95512 0.98882 1.69941 1.15773 1.47694 1.20603 0.86570 0.80425 0.79438 0.81057 1.20193 1.21507 1.20149 1.20848 0.93237 0.92825 0.94724 1.23069 0.94873 0.93569 0.96010 1.22331 0.98790 0.98076 0.91839 1.21436 0.93487 0.98906 1.01971 1.21291 0.90027 0.93871 0.88668 1.86130 1.37359 1.63668 1.32429 1.23701 0.89338 0.98811 0.93599 1.20061 0.79097 0.74638 0.85169 1.93233 1.88217 1.45185 1.89027 1.93238 1.57861 1.71546 1.92456 1.93236 1.73328 1.83373 1.65650 1.73127 1.24206 1.21471 0.96525 1.72865 1.01074 1.07931 1.20144 0.89055 0.88850 0.87381 0.94926 0.91873 0.98867 0.94281 0.92914 0.87278 0.93606 0.82521 0.82658 0.86523 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.09 14.32 29.01 0.42 -2.67 16 2 C -0.12 -2.07 8.74 -36.03 -0.32 -2.39 16 3 C 0.07 1.21 5.26 -4.98 -0.03 1.19 16 4 N -0.52 -10.46 4.37 -238.97 -1.04 -11.50 16 5 C 0.20 4.80 4.59 -4.97 -0.02 4.77 16 6 C -0.51 -13.82 8.56 -34.44 -0.29 -14.11 16 7 H 0.07 1.83 7.73 -52.49 -0.41 1.43 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 10 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.11 1.96 5.13 -4.98 -0.03 1.93 16 15 C 0.07 1.09 5.77 -82.41 -0.48 0.62 16 16 C -0.08 -0.91 8.17 -39.24 -0.32 -1.23 16 17 C -0.13 -1.34 10.16 -39.05 -0.40 -1.74 16 18 C 0.25 3.07 7.57 -16.95 -0.13 2.94 16 19 O -0.29 -3.18 10.02 -18.77 -0.19 -3.37 16 20 C 0.02 0.21 5.29 37.16 0.20 0.40 16 21 C 0.46 4.10 3.32 37.16 0.12 4.23 16 22 F -0.18 -1.70 17.26 2.25 0.04 -1.66 16 23 F -0.17 -1.48 17.32 2.25 0.04 -1.44 16 24 F -0.17 -1.72 17.26 2.25 0.04 -1.68 16 25 N -0.30 -4.48 10.41 30.50 0.32 -4.16 16 26 N -0.18 -3.02 11.42 33.61 0.38 -2.63 16 27 H 0.09 1.33 7.84 -52.49 -0.41 0.92 16 28 H 0.09 1.29 8.06 -52.49 -0.42 0.86 16 29 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.03 0.53 7.71 -51.93 -0.40 0.13 16 31 H 0.06 0.90 5.58 -51.93 -0.29 0.61 16 32 H -0.01 -0.17 8.01 -51.93 -0.42 -0.58 16 33 H 0.04 1.04 7.12 -51.93 -0.37 0.67 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.11 2.13 7.36 -51.93 -0.38 1.75 16 36 H 0.05 0.70 8.03 -51.93 -0.42 0.28 16 37 H 0.16 1.29 8.02 -52.49 -0.42 0.87 16 38 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.12 0.93 8.11 -51.93 -0.42 0.51 16 40 H 0.12 0.98 8.11 -51.93 -0.42 0.56 16 LS Contribution 360.62 15.07 5.43 5.43 Total: -1.00 -30.88 360.62 -5.39 -36.27 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -4.76 Total: -1.75 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -1.37 Total: -4.59 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.39 Total: -43.73 kcal Atomic # 8 Polarization: -3.18 SS G_CDS: -0.19 Total: -3.37 kcal Atomic # 9 Polarization: -4.90 SS G_CDS: 0.12 Total: -4.78 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.88 -5.39 -36.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593990891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.381 kcal (2) G-P(sol) polarization free energy of solvation -30.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds