Wall clock time and date at job start Tue Mar 31 2020 16:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 119.99374 * 2 1 4 4 N 1.46903 * 109.47222 * 125.00195 * 3 2 1 5 5 C 1.46902 * 110.99612 * 288.21922 * 4 3 2 6 6 C 1.50706 * 109.47407 * 160.67220 * 5 4 3 7 7 H 1.07996 * 119.99549 * 1.27754 * 6 5 4 8 8 C 1.37873 * 119.99896 * 181.28473 * 6 5 4 9 9 N 1.31512 * 120.00576 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99761 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47246 * 59.99549 * 10 8 6 12 12 H 1.48497 * 109.47175 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47172 * 300.00005 * 10 8 6 14 14 C 1.46891 * 111.00746 * 164.26037 * 4 3 2 15 15 C 1.50703 * 109.47295 * 293.95687 * 14 4 3 16 16 C 1.38757 * 120.01699 * 94.99343 * 15 14 4 17 17 C 1.38642 * 118.02173 * 179.97438 * 16 15 14 18 18 C 1.39272 * 117.91844 * 0.02562 * 17 16 15 19 19 O 1.35690 * 120.13818 * 179.97438 * 18 17 16 20 20 C 1.42898 * 116.99720 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.46873 * 179.97438 * 20 19 18 22 22 F 1.39907 * 109.46835 * 60.00128 * 21 20 19 23 23 F 1.39900 * 109.47391 * 179.97438 * 21 20 19 24 24 F 1.39900 * 109.47499 * 300.00166 * 21 20 19 25 25 N 1.32339 * 119.71874 * 359.97438 * 18 17 16 26 26 N 1.28346 * 122.10748 * 359.97438 * 25 18 17 27 27 H 1.08000 * 120.00289 * 0.02562 * 1 2 3 28 28 H 1.08001 * 120.00156 * 179.97438 * 1 2 3 29 29 H 1.07995 * 120.00039 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47683 * 4.99418 * 3 2 1 31 31 H 1.09001 * 109.46782 * 244.99362 * 3 2 1 32 32 H 1.09006 * 109.46873 * 280.66948 * 5 4 3 33 33 H 1.08997 * 109.47666 * 40.66660 * 5 4 3 34 34 H 0.96996 * 120.00643 * 180.02562 * 9 8 6 35 35 H 1.08996 * 109.47496 * 173.95150 * 14 4 3 36 36 H 1.09001 * 109.47223 * 53.95051 * 14 4 3 37 37 H 1.07997 * 120.98942 * 359.97438 * 16 15 14 38 38 H 1.08002 * 121.04119 * 179.72563 * 17 16 15 39 39 H 1.09004 * 109.47323 * 299.99849 * 20 19 18 40 40 H 1.08996 * 109.47465 * 60.00289 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9962 1.3321 1.1345 5 6 2.2752 1.4841 2.4053 6 6 3.1608 1.0416 3.5415 7 1 4.1666 0.7028 3.3417 8 6 2.6870 1.0692 4.8360 9 7 1.4623 1.4821 5.0794 10 14 3.7846 0.5200 6.2442 11 1 4.9983 1.3744 6.2881 12 1 3.0447 0.6438 7.5258 13 1 4.1831 -0.8957 6.0382 14 6 3.9980 2.3933 0.9674 15 6 4.8782 2.0720 -0.2129 16 6 4.5885 2.6057 -1.4605 17 6 5.4261 2.2833 -2.5173 18 6 6.5063 1.4427 -2.2602 19 8 7.3544 1.0975 -3.2616 20 6 8.4401 0.2324 -2.9229 21 6 9.2806 -0.0438 -4.1712 22 9 9.7837 1.1624 -4.6707 23 9 10.3439 -0.8903 -3.8396 24 9 8.4832 -0.6552 -5.1446 25 7 6.7021 0.9820 -1.0352 26 7 5.9242 1.2845 -0.0602 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3584 2.1316 0.0895 31 1 2.6212 1.4026 -0.9314 32 1 2.0008 2.5298 2.5446 33 1 1.3739 0.8714 2.3873 34 1 1.1291 1.5019 5.9901 35 1 4.6084 2.4619 1.8678 36 1 3.4944 3.3448 0.7965 37 1 3.7361 3.2531 -1.6041 38 1 5.2437 2.6680 -3.5099 39 1 9.0612 0.7086 -2.1642 40 1 8.0481 -0.7075 -2.5342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593990891.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:14 Heat of formation + Delta-G solvation = -119.984359 kcal Electronic energy + Delta-G solvation = -27688.164889 eV Core-core repulsion = 23089.274459 eV Total energy + Delta-G solvation = -4598.890430 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.25596 -48.79564 -48.73210 -42.39960 -40.02725 -38.65923 -34.95323 -34.72991 -34.11257 -32.93994 -31.05934 -29.34440 -28.03915 -26.19255 -25.59499 -24.18309 -24.10094 -22.21109 -20.66804 -20.38937 -19.80208 -19.36639 -18.99661 -18.49531 -18.02400 -17.52938 -17.21139 -16.78210 -16.14075 -15.92161 -15.68834 -15.59514 -15.27296 -15.17327 -15.15246 -15.02790 -14.97064 -14.88801 -14.88468 -14.67063 -14.07071 -14.02326 -13.39025 -13.05447 -12.94953 -12.90647 -12.82108 -12.56200 -12.48107 -12.21177 -12.01661 -11.74292 -11.36918 -11.22364 -10.64395 -10.56391 -10.27560 -10.12400 -9.01494 -8.14826 -6.22794 -0.24889 -0.11228 0.94423 1.42957 1.44706 1.45651 1.53625 1.78313 2.38747 2.45533 2.56256 2.83839 2.85805 3.12535 3.17593 3.28245 3.45582 3.68642 3.88532 3.89570 3.99598 4.03202 4.14254 4.29703 4.35503 4.54682 4.56131 4.75032 4.79427 4.91582 5.05981 5.09015 5.22325 5.33372 5.63389 5.69780 5.76809 5.88803 6.14588 6.34730 6.63765 6.92575 7.46076 7.62141 8.94810 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.014491 B = 0.002636 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.752829 B =10621.516440 C =11675.002977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.150 4.150 3 C 0.077 3.923 4 N -0.538 5.538 5 C 0.214 3.786 6 C -0.518 4.518 7 H 0.056 0.944 8 C 0.007 3.993 9 N -0.932 5.932 10 Si 0.958 3.042 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.274 1.274 14 C 0.117 3.883 15 C 0.060 3.940 16 C -0.071 4.071 17 C -0.112 4.112 18 C 0.245 3.755 19 O -0.289 6.289 20 C 0.020 3.980 21 C 0.473 3.527 22 F -0.179 7.179 23 F -0.168 7.168 24 F -0.180 7.180 25 N -0.321 5.321 26 N -0.223 5.223 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.039 0.961 31 H 0.090 0.910 32 H -0.027 1.027 33 H 0.014 0.986 34 H 0.263 0.737 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.194 0.806 38 H 0.196 0.804 39 H 0.125 0.875 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.721 2.003 -21.364 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.168 4.168 3 C -0.050 4.050 4 N -0.262 5.262 5 C 0.088 3.912 6 C -0.557 4.557 7 H 0.074 0.926 8 C -0.191 4.191 9 N -0.572 5.572 10 Si 0.783 3.217 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.200 1.200 14 C -0.012 4.012 15 C -0.088 4.088 16 C -0.099 4.099 17 C -0.141 4.141 18 C 0.059 3.941 19 O -0.194 6.194 20 C -0.057 4.057 21 C 0.419 3.581 22 F -0.160 7.160 23 F -0.149 7.149 24 F -0.161 7.161 25 N -0.175 5.175 26 N -0.065 5.065 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.116 0.884 30 H 0.058 0.942 31 H 0.108 0.892 32 H -0.009 1.009 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.211 0.789 38 H 0.214 0.786 39 H 0.143 0.857 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.864 0.704 -20.556 23.261 hybrid contribution -0.612 0.900 0.179 1.103 sum 10.252 1.605 -20.377 22.867 Atomic orbital electron populations 1.23916 0.95528 1.02423 1.00820 1.22842 0.96044 0.98402 0.99561 1.21344 0.94362 0.94868 0.94469 1.61913 1.15521 1.46051 1.02756 1.19351 0.93018 0.93432 0.85350 1.21446 1.00036 1.42542 0.91654 0.92564 1.25737 0.96382 0.95612 1.01337 1.70044 1.17236 1.48807 1.21158 0.85609 0.78901 0.78970 0.78176 1.19419 1.20826 1.19973 1.20703 0.92614 0.93125 0.94759 1.22784 0.94648 0.94714 0.96698 1.22601 0.99720 0.97530 0.90077 1.21886 0.91716 0.97117 1.03402 1.21579 0.90622 0.93666 0.88189 1.86131 1.37576 1.63857 1.31884 1.23829 0.89059 0.98931 0.93860 1.19943 0.78945 0.74399 0.84828 1.93227 1.88274 1.45455 1.89086 1.93243 1.57783 1.71493 1.92416 1.93226 1.73500 1.83473 1.65909 1.72998 1.24518 1.22641 0.97382 1.72740 1.02427 1.09592 1.21755 0.88171 0.87454 0.88429 0.94246 0.89183 1.00889 0.96769 0.92807 0.90620 0.91333 0.78919 0.78636 0.85658 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.55 14.32 67.78 0.97 -4.57 16 2 C -0.15 -4.93 8.74 25.64 0.22 -4.71 16 3 C 0.08 2.46 5.26 85.55 0.45 2.91 16 4 N -0.54 -21.67 4.37 -909.96 -3.97 -25.64 16 5 C 0.21 10.82 4.59 85.56 0.39 11.21 16 6 C -0.52 -29.06 8.56 25.60 0.22 -28.84 16 7 H 0.06 3.20 7.73 -2.91 -0.02 3.18 16 8 C 0.01 0.42 5.46 84.65 0.46 0.88 16 9 N -0.93 -55.06 13.29 21.45 0.28 -54.78 16 10 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 14 C 0.12 4.07 5.13 85.56 0.44 4.51 16 15 C 0.06 1.76 5.77 42.69 0.25 2.01 16 16 C -0.07 -1.37 8.17 22.49 0.18 -1.18 16 17 C -0.11 -1.93 10.16 22.62 0.23 -1.70 16 18 C 0.25 5.59 7.57 84.87 0.64 6.24 16 19 O -0.29 -5.71 10.02 -90.08 -0.90 -6.61 16 20 C 0.02 0.34 5.29 71.98 0.38 0.72 16 21 C 0.47 7.69 3.32 71.98 0.24 7.93 16 22 F -0.18 -3.19 17.26 44.97 0.78 -2.42 16 23 F -0.17 -2.73 17.32 44.97 0.78 -1.95 16 24 F -0.18 -3.28 17.26 44.97 0.78 -2.51 16 25 N -0.32 -9.43 10.41 -170.22 -1.77 -11.20 16 26 N -0.22 -7.61 11.42 -47.59 -0.54 -8.16 16 27 H 0.10 2.74 7.84 -2.91 -0.02 2.72 16 28 H 0.11 2.80 8.06 -2.91 -0.02 2.77 16 29 H 0.10 3.37 8.06 -2.91 -0.02 3.35 16 30 H 0.04 1.21 7.71 -2.39 -0.02 1.19 16 31 H 0.09 2.35 5.58 -2.39 -0.01 2.34 16 32 H -0.03 -1.42 8.01 -2.38 -0.02 -1.44 16 33 H 0.01 0.78 7.12 -2.39 -0.02 0.76 16 34 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 35 H 0.08 3.09 7.36 -2.39 -0.02 3.08 16 36 H 0.07 2.02 8.03 -2.39 -0.02 2.00 16 37 H 0.19 2.25 8.02 -2.91 -0.02 2.22 16 38 H 0.20 1.77 8.06 -2.91 -0.02 1.75 16 39 H 0.13 1.88 8.11 -2.39 -0.02 1.86 16 40 H 0.12 1.93 8.11 -2.39 -0.02 1.91 16 Total: -1.00 -68.57 360.62 3.60 -64.97 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 1.07 Total: 6.13 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 5.08 Total: -4.61 kcal Atomic # 7 Polarization: -93.77 SS G_CDS: -6.00 Total: -99.78 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.90 Total: -6.61 kcal Atomic # 9 Polarization: -9.20 SS G_CDS: 2.33 Total: -6.87 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -68.57 3.60 -64.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593990891.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.015 kcal (2) G-P(sol) polarization free energy of solvation -68.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds