Wall clock time and date at job start Tue Mar 31 2020 16:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 120.00292 * 2 1 4 4 N 1.46494 * 109.47440 * 124.99792 * 3 2 1 5 5 C 1.46506 * 119.99940 * 269.99930 * 4 3 2 6 6 C 1.50699 * 109.46957 * 269.99815 * 5 4 3 7 7 H 1.07999 * 119.99909 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99519 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00379 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99503 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47305 * 60.00471 * 10 8 6 12 12 H 1.48510 * 109.46793 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47214 * 299.99636 * 10 8 6 14 14 C 1.34779 * 119.99964 * 89.99655 * 4 3 2 15 15 O 1.21288 * 119.99810 * 180.02562 * 14 4 3 16 16 C 1.50694 * 120.00231 * 0.02562 * 14 4 3 17 17 C 1.52998 * 109.47337 * 174.09820 * 16 14 4 18 18 H 1.08996 * 109.47161 * 53.89992 * 17 16 14 19 19 N 1.46497 * 109.46909 * 293.90039 * 17 16 14 20 20 C 1.34956 * 126.03571 * 274.71464 * 19 17 16 21 21 C 1.35316 * 107.74339 * 179.84017 * 20 19 17 22 22 C 1.39866 * 107.92112 * 0.42149 * 21 20 19 23 23 N 1.30840 * 108.20395 * 359.74204 * 22 21 20 24 24 C 1.52998 * 109.47147 * 173.90233 * 17 16 14 25 25 F 1.39904 * 109.47277 * 176.55661 * 24 17 16 26 26 F 1.39908 * 109.46961 * 296.54894 * 24 17 16 27 27 F 1.39893 * 109.47741 * 56.54911 * 24 17 16 28 28 H 1.07998 * 120.00702 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.99857 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99406 * 179.97438 * 2 1 3 31 31 H 1.09008 * 109.46907 * 4.99196 * 3 2 1 32 32 H 1.08998 * 109.46618 * 244.99937 * 3 2 1 33 33 H 1.09003 * 109.46845 * 29.99925 * 5 4 3 34 34 H 1.09001 * 109.47127 * 149.99627 * 5 4 3 35 35 H 0.97003 * 120.00127 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.47082 * 54.09258 * 16 14 4 37 37 H 1.09006 * 109.47116 * 294.09945 * 16 14 4 38 38 H 1.07997 * 126.12763 * 359.97438 * 20 19 17 39 39 H 1.08000 * 126.04273 * 180.16231 * 21 20 19 40 40 H 1.08005 * 125.89720 * 179.71482 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5588 1.8650 2.4248 6 6 2.8443 3.3437 2.4802 7 1 3.3034 3.8370 1.6363 8 6 2.5184 4.0668 3.6080 9 7 1.9589 3.4661 4.6355 10 14 2.8716 5.8998 3.6765 11 1 2.1358 6.5869 2.5848 12 1 2.4309 6.4402 4.9876 13 1 4.3295 6.1295 3.5119 14 6 4.2497 0.8660 0.9824 15 8 5.0197 0.8878 1.9193 16 6 4.6972 0.3181 -0.3481 17 6 6.1919 -0.0035 -0.2906 18 1 6.3898 -0.6608 0.5560 19 7 6.9528 1.2384 -0.1329 20 6 7.3516 2.0571 -1.1289 21 6 8.0212 3.0914 -0.5694 22 6 8.0403 2.8932 0.8150 23 7 7.4003 1.7827 1.0778 24 6 6.6142 -0.6993 -1.5862 25 9 7.9951 -0.9228 -1.5668 26 9 5.9453 -1.9230 -1.6976 27 9 6.2882 0.1115 -2.6786 28 1 -0.5401 -0.9352 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3586 2.1316 0.0894 32 1 2.6213 1.4024 -0.9314 33 1 1.4887 1.6967 2.5458 34 1 3.0988 1.3604 3.2260 35 1 1.7300 3.9749 5.4291 36 1 4.5147 1.0592 -1.1262 37 1 4.1385 -0.5904 -0.5735 38 1 7.1673 1.9137 -2.1833 39 1 8.4661 3.9210 -1.0987 40 1 8.5038 3.5442 1.5416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597683900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:40 Heat of formation + Delta-G solvation = -71.266698 kcal Electronic energy + Delta-G solvation = -29798.356065 eV Core-core repulsion = 25201.578192 eV Total energy + Delta-G solvation = -4596.777873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.56357 -48.07097 -47.98703 -41.04416 -39.20752 -35.90175 -34.90487 -33.19812 -32.11189 -30.33480 -29.65308 -28.14607 -26.75273 -25.42340 -23.62755 -22.48378 -21.06715 -20.81401 -20.03883 -19.18321 -18.88586 -18.16098 -17.95868 -16.88357 -16.41646 -16.00475 -15.76454 -15.24194 -14.97279 -14.77989 -14.62515 -14.49853 -14.30968 -14.24918 -14.17469 -14.09545 -14.03519 -13.35088 -13.14484 -12.74673 -12.49119 -12.44785 -12.36292 -11.94216 -11.80741 -11.65989 -11.28055 -11.07137 -10.92108 -10.59605 -10.34370 -10.19250 -9.67496 -9.29519 -9.24968 -9.02663 -8.49769 -8.43154 -7.73525 -6.04466 -4.08971 1.86237 2.07400 2.37204 2.44849 3.10059 3.15069 3.29485 3.31962 3.36225 3.40707 3.54862 3.82633 3.98281 4.37464 4.44709 4.65008 4.81387 4.94563 5.09918 5.11380 5.28484 5.29908 5.34751 5.37664 5.61649 5.66508 5.88751 5.95279 6.12335 6.13993 6.72402 6.79258 6.84347 6.99910 7.02657 7.41580 7.49715 7.90532 7.91180 8.22093 8.31639 8.86412 9.01409 9.55861 11.03648 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.011451 B = 0.004902 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.712659 B = 5710.095648 C = 7445.356246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.171 4.171 3 C 0.134 3.866 4 N -0.591 5.591 5 C 0.251 3.749 6 C -0.524 4.524 7 H 0.055 0.945 8 C 0.063 3.937 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.506 3.494 15 O -0.506 6.506 16 C -0.165 4.165 17 C 0.144 3.856 18 H 0.152 0.848 19 N -0.371 5.371 20 C 0.029 3.971 21 C -0.259 4.259 22 C 0.036 3.964 23 N -0.227 5.227 24 C 0.452 3.548 25 F -0.170 7.170 26 F -0.167 7.167 27 F -0.175 7.175 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.174 0.826 39 H 0.147 0.853 40 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.992 -7.836 -16.038 18.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.190 4.190 3 C 0.010 3.990 4 N -0.323 5.323 5 C 0.132 3.868 6 C -0.563 4.563 7 H 0.073 0.927 8 C -0.139 4.139 9 N -0.533 5.533 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.290 3.710 15 O -0.381 6.381 16 C -0.206 4.206 17 C 0.038 3.962 18 H 0.170 0.830 19 N -0.155 5.155 20 C -0.114 4.114 21 C -0.288 4.288 22 C -0.152 4.152 23 N -0.045 5.045 24 C 0.396 3.604 25 F -0.152 7.152 26 F -0.148 7.148 27 F -0.157 7.157 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.122 0.878 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.123 0.877 37 H 0.134 0.866 38 H 0.191 0.809 39 H 0.165 0.835 40 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 5.881 -8.703 -14.442 17.858 hybrid contribution 0.285 1.513 -0.928 1.798 sum 6.166 -7.190 -15.370 18.054 Atomic orbital electron populations 1.23829 0.95840 1.01835 1.00203 1.23404 0.96460 0.98881 1.00251 1.20599 0.93225 0.95515 0.89618 1.48162 1.10088 1.60317 1.13710 1.19265 0.95294 0.93766 0.78448 1.21343 1.40528 0.93245 1.01215 0.92711 1.24903 0.95021 0.98683 0.95313 1.69919 1.41999 1.36248 1.05173 0.86583 0.78887 0.84992 0.77113 1.20323 1.21169 1.20135 1.19664 0.82962 0.79783 0.88584 1.90820 1.51523 1.54893 1.40839 1.22297 0.92400 1.04809 1.01104 1.21886 0.92453 0.86393 0.95478 0.83049 1.48159 1.43817 1.18116 1.05404 1.22776 1.00132 0.93095 0.95412 1.21472 1.10712 1.02316 0.94315 1.24068 0.98925 0.96111 0.96145 1.77895 1.13632 1.11419 1.01528 1.20517 0.75612 0.77898 0.86365 1.93250 1.30488 1.94741 1.96691 1.93234 1.80286 1.44881 1.96433 1.93165 1.92359 1.72429 1.57728 0.88705 0.88253 0.87804 0.89340 0.91063 0.95002 0.93834 0.92678 0.87667 0.86635 0.80872 0.83529 0.79937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 14.32 29.01 0.42 -1.79 16 2 C -0.17 -2.27 9.85 -36.03 -0.35 -2.63 16 3 C 0.13 2.08 5.67 -5.20 -0.03 2.05 16 4 N -0.59 -11.99 2.44 -176.43 -0.43 -12.42 16 5 C 0.25 6.46 5.16 -5.19 -0.03 6.44 16 6 C -0.52 -14.79 9.39 -34.44 -0.32 -15.11 16 7 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16 8 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 10 Si 0.90 21.99 29.54 -169.99 -5.02 16.96 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.51 9.88 7.50 -10.99 -0.08 9.79 16 15 O -0.51 -12.06 13.66 5.55 0.08 -11.98 16 16 C -0.16 -2.22 3.82 -27.89 -0.11 -2.33 16 17 C 0.14 1.93 2.33 -67.93 -0.16 1.77 16 18 H 0.15 2.11 7.83 -51.93 -0.41 1.71 16 19 N -0.37 -5.83 3.09 -54.87 -0.17 -6.00 16 20 C 0.03 0.39 10.29 -17.22 -0.18 0.22 16 21 C -0.26 -3.55 10.80 -40.01 -0.43 -3.98 16 22 C 0.04 0.58 12.03 -17.37 -0.21 0.37 16 23 N -0.23 -4.27 10.92 30.63 0.33 -3.94 16 24 C 0.45 4.95 2.47 37.16 0.09 5.04 16 25 F -0.17 -2.03 17.04 2.25 0.04 -1.99 16 26 F -0.17 -1.70 16.83 2.25 0.04 -1.66 16 27 F -0.18 -1.79 14.28 2.25 0.03 -1.75 16 28 H 0.09 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.10 1.22 7.84 -52.49 -0.41 0.81 16 30 H 0.10 1.26 8.00 -52.49 -0.42 0.84 16 31 H 0.09 1.46 7.72 -51.92 -0.40 1.06 16 32 H 0.07 0.91 6.28 -51.93 -0.33 0.58 16 33 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.11 1.29 6.85 -51.93 -0.36 0.93 16 37 H 0.12 1.21 7.68 -51.93 -0.40 0.81 16 38 H 0.17 1.86 6.14 -52.49 -0.32 1.54 16 39 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.18 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -34.11 355.63 -5.16 -39.27 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.66 Total: 2.46 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -1.49 Total: 1.53 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.47 Total: -48.21 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.11 Total: -5.40 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.11 -5.16 -39.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597683900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.996 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds