Wall clock time and date at job start Tue Mar 31 2020 16:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 120.00292 * 2 1 4 4 N 1.46494 * 109.47440 * 124.99792 * 3 2 1 5 5 C 1.46506 * 119.99940 * 269.99930 * 4 3 2 6 6 C 1.50699 * 109.46957 * 269.99815 * 5 4 3 7 7 H 1.07999 * 119.99909 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99519 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00379 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99503 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47305 * 60.00471 * 10 8 6 12 12 H 1.48510 * 109.46793 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47214 * 299.99636 * 10 8 6 14 14 C 1.34779 * 119.99964 * 89.99655 * 4 3 2 15 15 O 1.21288 * 119.99810 * 180.02562 * 14 4 3 16 16 C 1.50694 * 120.00231 * 0.02562 * 14 4 3 17 17 C 1.52998 * 109.47337 * 174.09820 * 16 14 4 18 18 H 1.08996 * 109.47161 * 53.89992 * 17 16 14 19 19 N 1.46497 * 109.46909 * 293.90039 * 17 16 14 20 20 C 1.34956 * 126.03571 * 274.71464 * 19 17 16 21 21 C 1.35316 * 107.74339 * 179.84017 * 20 19 17 22 22 C 1.39866 * 107.92112 * 0.42149 * 21 20 19 23 23 N 1.30840 * 108.20395 * 359.74204 * 22 21 20 24 24 C 1.52998 * 109.47147 * 173.90233 * 17 16 14 25 25 F 1.39904 * 109.47277 * 176.55661 * 24 17 16 26 26 F 1.39908 * 109.46961 * 296.54894 * 24 17 16 27 27 F 1.39893 * 109.47741 * 56.54911 * 24 17 16 28 28 H 1.07998 * 120.00702 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.99857 * 0.02562 * 1 2 3 30 30 H 1.08000 * 119.99406 * 179.97438 * 2 1 3 31 31 H 1.09008 * 109.46907 * 4.99196 * 3 2 1 32 32 H 1.08998 * 109.46618 * 244.99937 * 3 2 1 33 33 H 1.09003 * 109.46845 * 29.99925 * 5 4 3 34 34 H 1.09001 * 109.47127 * 149.99627 * 5 4 3 35 35 H 0.97003 * 120.00127 * 179.97438 * 9 8 6 36 36 H 1.08997 * 109.47082 * 54.09258 * 16 14 4 37 37 H 1.09006 * 109.47116 * 294.09945 * 16 14 4 38 38 H 1.07997 * 126.12763 * 359.97438 * 20 19 17 39 39 H 1.08000 * 126.04273 * 180.16231 * 21 20 19 40 40 H 1.08005 * 125.89720 * 179.71482 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5588 1.8650 2.4248 6 6 2.8443 3.3437 2.4802 7 1 3.3034 3.8370 1.6363 8 6 2.5184 4.0668 3.6080 9 7 1.9589 3.4661 4.6355 10 14 2.8716 5.8998 3.6765 11 1 2.1358 6.5869 2.5848 12 1 2.4309 6.4402 4.9876 13 1 4.3295 6.1295 3.5119 14 6 4.2497 0.8660 0.9824 15 8 5.0197 0.8878 1.9193 16 6 4.6972 0.3181 -0.3481 17 6 6.1919 -0.0035 -0.2906 18 1 6.3898 -0.6608 0.5560 19 7 6.9528 1.2384 -0.1329 20 6 7.3516 2.0571 -1.1289 21 6 8.0212 3.0914 -0.5694 22 6 8.0403 2.8932 0.8150 23 7 7.4003 1.7827 1.0778 24 6 6.6142 -0.6993 -1.5862 25 9 7.9951 -0.9228 -1.5668 26 9 5.9453 -1.9230 -1.6976 27 9 6.2882 0.1115 -2.6786 28 1 -0.5401 -0.9352 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3586 2.1316 0.0894 32 1 2.6213 1.4024 -0.9314 33 1 1.4887 1.6967 2.5458 34 1 3.0988 1.3604 3.2260 35 1 1.7300 3.9749 5.4291 36 1 4.5147 1.0592 -1.1262 37 1 4.1385 -0.5904 -0.5735 38 1 7.1673 1.9137 -2.1833 39 1 8.4661 3.9210 -1.0987 40 1 8.5038 3.5442 1.5416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597683900.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:40 Heat of formation + Delta-G solvation = -92.274079 kcal Electronic energy + Delta-G solvation = -29799.267014 eV Core-core repulsion = 25201.578192 eV Total energy + Delta-G solvation = -4597.688822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.43188 -48.90235 -48.87453 -42.18327 -40.71858 -37.32902 -36.12473 -35.07782 -33.66063 -31.58319 -30.83740 -29.72935 -28.07264 -26.85782 -25.06278 -24.03100 -22.16396 -21.95944 -21.16468 -20.29319 -19.78833 -19.41165 -18.97116 -18.63923 -17.98701 -17.38456 -17.09128 -16.63524 -16.19613 -15.89926 -15.83312 -15.60678 -15.46074 -15.43326 -15.20650 -15.00466 -14.97506 -14.55102 -14.47336 -14.21743 -14.09612 -13.67681 -13.47818 -13.27585 -13.18750 -13.04351 -12.95825 -12.72047 -12.59068 -12.24002 -12.18430 -11.70124 -11.49239 -10.65144 -10.63864 -10.48579 -10.31076 -9.60488 -9.44591 -8.22929 -6.36977 0.82492 1.01428 1.31134 1.34258 1.38423 1.43870 1.45643 1.81812 1.97171 2.16473 2.35574 2.51314 2.71642 2.94187 3.06967 3.29351 3.58271 3.72866 3.79910 4.03630 4.05977 4.20330 4.25867 4.32847 4.48442 4.62057 4.83692 4.84205 5.00602 5.06502 5.09857 5.22435 5.50743 5.65849 5.71538 5.76208 5.95937 5.99669 6.06033 6.67382 6.75669 6.76324 7.28036 7.46764 8.83817 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.011451 B = 0.004902 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2444.712659 B = 5710.095648 C = 7445.356246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.183 4.183 3 C 0.131 3.869 4 N -0.598 5.598 5 C 0.270 3.730 6 C -0.537 4.537 7 H 0.048 0.952 8 C 0.010 3.990 9 N -0.927 5.927 10 Si 0.962 3.038 11 H -0.260 1.260 12 H -0.278 1.278 13 H -0.279 1.279 14 C 0.497 3.503 15 O -0.558 6.558 16 C -0.149 4.149 17 C 0.137 3.863 18 H 0.139 0.861 19 N -0.378 5.378 20 C 0.032 3.968 21 C -0.263 4.263 22 C 0.021 3.979 23 N -0.290 5.290 24 C 0.471 3.529 25 F -0.175 7.175 26 F -0.158 7.158 27 F -0.165 7.165 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.019 0.981 34 H -0.004 1.004 35 H 0.266 0.734 36 H 0.127 0.873 37 H 0.153 0.847 38 H 0.206 0.794 39 H 0.176 0.824 40 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.789 -7.659 -19.089 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.202 4.202 3 C 0.009 3.991 4 N -0.329 5.329 5 C 0.149 3.851 6 C -0.576 4.576 7 H 0.066 0.934 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.787 3.213 11 H -0.185 1.185 12 H -0.203 1.203 13 H -0.205 1.205 14 C 0.284 3.716 15 O -0.436 6.436 16 C -0.189 4.189 17 C 0.031 3.969 18 H 0.156 0.844 19 N -0.162 5.162 20 C -0.111 4.111 21 C -0.292 4.292 22 C -0.166 4.166 23 N -0.109 5.109 24 C 0.415 3.585 25 F -0.156 7.156 26 F -0.139 7.139 27 F -0.146 7.146 28 H 0.135 0.865 29 H 0.114 0.886 30 H 0.138 0.862 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.037 0.963 34 H 0.014 0.986 35 H 0.075 0.925 36 H 0.145 0.855 37 H 0.171 0.829 38 H 0.222 0.778 39 H 0.194 0.806 40 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 5.657 -8.540 -17.547 20.318 hybrid contribution 0.318 1.422 0.022 1.457 sum 5.975 -7.118 -17.525 19.837 Atomic orbital electron populations 1.24048 0.95693 1.02788 0.98317 1.23344 0.96766 0.98279 1.01857 1.20836 0.92769 0.96464 0.89016 1.48116 1.11548 1.60196 1.13071 1.18613 0.93628 0.92470 0.80377 1.21598 1.40313 0.94510 1.01149 0.93403 1.25790 0.94713 1.03478 0.94908 1.70038 1.42876 1.38070 1.05742 0.85553 0.78432 0.79451 0.77906 1.18481 1.20298 1.20513 1.20617 0.81912 0.78740 0.90335 1.90803 1.52782 1.56722 1.43248 1.22237 0.92756 1.06620 0.97292 1.21962 0.92273 0.85955 0.96705 0.84354 1.48278 1.44036 1.18827 1.05023 1.23348 0.99044 0.92372 0.96326 1.21866 1.10677 1.03328 0.93329 1.24498 0.98495 0.95744 0.97912 1.77818 1.15840 1.13222 1.04027 1.19918 0.75348 0.77912 0.85289 1.93250 1.30919 1.94759 1.96661 1.93262 1.80056 1.44255 1.96310 1.93185 1.92238 1.72213 1.56961 0.86484 0.88636 0.86153 0.90846 0.87654 0.96266 0.98613 0.92473 0.85536 0.82923 0.77751 0.80624 0.78766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.84 14.32 67.78 0.97 -2.87 16 2 C -0.18 -4.49 9.85 25.65 0.25 -4.24 16 3 C 0.13 3.88 5.67 85.63 0.49 4.37 16 4 N -0.60 -24.50 2.44 -830.49 -2.03 -26.52 16 5 C 0.27 14.55 5.16 85.63 0.44 14.99 16 6 C -0.54 -31.15 9.39 25.60 0.24 -30.91 16 7 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 8 C 0.01 0.59 5.46 84.65 0.46 1.05 16 9 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 10 Si 0.96 45.52 29.54 68.60 2.03 47.55 16 11 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 13 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 14 C 0.50 19.49 7.50 87.65 0.66 20.15 16 15 O -0.56 -27.75 13.66 -3.05 -0.04 -27.79 16 16 C -0.15 -3.68 3.82 29.85 0.11 -3.57 16 17 C 0.14 3.48 2.33 44.99 0.10 3.59 16 18 H 0.14 3.90 7.83 -2.39 -0.02 3.88 16 19 N -0.38 -11.56 3.09 -327.50 -1.01 -12.57 16 20 C 0.03 0.80 10.29 83.54 0.86 1.66 16 21 C -0.26 -6.79 10.80 21.99 0.24 -6.55 16 22 C 0.02 0.68 12.03 85.23 1.02 1.70 16 23 N -0.29 -11.21 10.92 -57.02 -0.62 -11.84 16 24 C 0.47 9.00 2.47 71.98 0.18 9.18 16 25 F -0.17 -3.78 17.04 44.97 0.77 -3.02 16 26 F -0.16 -2.69 16.83 44.97 0.76 -1.94 16 27 F -0.16 -2.69 14.28 44.97 0.64 -2.05 16 28 H 0.12 2.12 8.06 -2.91 -0.02 2.10 16 29 H 0.10 2.21 7.84 -2.91 -0.02 2.18 16 30 H 0.12 2.56 8.00 -2.91 -0.02 2.53 16 31 H 0.07 2.38 7.72 -2.38 -0.02 2.36 16 32 H 0.11 2.35 6.28 -2.39 -0.01 2.34 16 33 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 34 H 0.00 -0.27 7.42 -2.39 -0.02 -0.28 16 35 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.13 2.63 6.85 -2.39 -0.02 2.61 16 37 H 0.15 2.64 7.68 -2.38 -0.02 2.62 16 38 H 0.21 3.61 6.14 -2.91 -0.02 3.59 16 39 H 0.18 3.31 8.06 -2.91 -0.02 3.28 16 40 H 0.20 5.32 8.06 -2.91 -0.02 5.30 16 Total: -1.00 -78.40 355.63 7.87 -70.53 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 1.07 Total: 15.46 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 6.03 Total: 8.56 kcal Atomic # 7 Polarization: -103.93 SS G_CDS: -3.38 Total: -107.30 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.04 Total: -27.79 kcal Atomic # 9 Polarization: -9.17 SS G_CDS: 2.17 Total: -7.00 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -78.40 7.87 -70.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597683900.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.748 kcal (2) G-P(sol) polarization free energy of solvation -78.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds