Wall clock time and date at job start Tue Mar 31 2020 16:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99740 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.46866 * 90.00390 * 8 6 4 10 10 H 1.48502 * 109.47245 * 210.00175 * 8 6 4 11 11 H 1.48494 * 109.47271 * 330.00312 * 8 6 4 12 12 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 13 13 N 1.46504 * 109.46883 * 300.00241 * 12 2 1 14 14 C 1.34775 * 119.99531 * 179.97438 * 13 12 2 15 15 O 1.21552 * 120.00294 * 0.02562 * 14 13 12 16 16 C 1.47862 * 120.00030 * 179.97438 * 14 13 12 17 17 C 1.39702 * 120.07366 * 0.02562 * 16 14 13 18 18 C 1.38048 * 120.14611 * 179.97438 * 17 16 14 19 19 C 1.38102 * 120.29333 * 0.05225 * 18 17 16 20 20 C 1.39647 * 120.14955 * 359.97438 * 19 18 17 21 21 C 1.47889 * 120.07704 * 179.97438 * 20 19 18 22 22 N 1.32680 * 126.35210 * 179.68538 * 21 20 19 23 23 C 1.34035 * 105.78224 * 179.88884 * 22 21 20 24 24 O 1.21926 * 126.41643 * 180.17636 * 23 22 21 25 25 O 1.34165 * 107.16958 * 0.37306 * 23 22 21 26 26 N 1.21321 * 109.82257 * 359.76357 * 25 23 22 27 27 H 0.97006 * 125.04005 * 180.02562 * 26 25 23 28 28 C 1.39302 * 120.07509 * 179.73000 * 16 14 13 29 29 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 30 30 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 31 31 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 34 34 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 35 35 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 36 36 H 1.09001 * 109.47002 * 59.99738 * 12 2 1 37 37 H 1.08993 * 109.46955 * 180.02562 * 12 2 1 38 38 H 0.96992 * 119.99966 * 359.97438 * 13 12 2 39 39 H 1.08005 * 119.92622 * 0.02562 * 17 16 14 40 40 H 1.08000 * 119.85435 * 180.02562 * 18 17 16 41 41 H 1.08004 * 119.92659 * 179.97438 * 19 18 17 42 42 H 1.07997 * 120.14897 * 359.97438 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.3427 -2.1620 -4.4117 10 1 2.4866 -0.1417 -5.1122 11 1 3.6293 -1.7585 -3.7120 12 6 2.0400 -0.7212 1.2494 13 7 1.5516 -0.0304 2.4455 14 6 1.8768 -0.4911 3.6696 15 8 2.5756 -1.4794 3.7812 16 6 1.3844 0.2063 4.8768 17 6 0.5815 1.3425 4.7504 18 6 0.1205 1.9945 5.8765 19 6 0.4500 1.5296 7.1345 20 6 1.2522 0.3952 7.2752 21 6 1.6045 -0.1009 8.6231 22 7 2.3490 -1.1636 8.9002 23 6 2.4045 -1.2311 10.2377 24 8 2.9976 -2.0685 10.8962 25 8 1.6816 -0.2072 10.7163 26 7 1.2243 0.4388 9.7968 27 1 0.6677 1.2275 9.8928 28 6 1.7149 -0.2718 6.1428 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.7095 1.1615 -3.4844 36 1 1.6766 -1.7488 1.2494 37 1 3.1299 -0.7208 1.2495 38 1 0.9942 0.7583 2.3564 39 1 0.3202 1.7112 3.7694 40 1 -0.5002 2.8722 5.7733 41 1 0.0864 2.0445 8.0116 42 1 2.3309 -1.1528 6.2461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597762095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:49 Heat of formation + Delta-G solvation = 30.783412 kcal Electronic energy + Delta-G solvation = -27129.950264 eV Core-core repulsion = 23079.454356 eV Total energy + Delta-G solvation = -4050.495908 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.90984 -40.40212 -38.73270 -38.33082 -36.47606 -36.19485 -33.60212 -33.07288 -31.66703 -31.54231 -30.63096 -26.06732 -25.82009 -25.42941 -25.27474 -24.33094 -22.90545 -22.40874 -20.85040 -20.06196 -18.98958 -18.87299 -18.21637 -16.83922 -16.63314 -16.39987 -15.88513 -15.67840 -15.18804 -14.99462 -14.66826 -14.63164 -14.15702 -14.03740 -13.75760 -13.48184 -12.99083 -12.90424 -12.45001 -12.28980 -12.20081 -12.14787 -11.69201 -11.47656 -11.26646 -10.92787 -10.92341 -10.74613 -10.47652 -10.26745 -9.83415 -9.72834 -9.53955 -9.53128 -9.50842 -9.38239 -8.87192 -8.56948 -8.40747 -6.08417 -4.18320 -0.26033 0.53736 1.17205 1.27846 2.46504 2.65368 2.80853 3.25102 3.32344 3.34941 3.39685 3.46195 3.59517 4.10314 4.18209 4.35376 4.39698 4.63041 4.71978 4.88896 5.06471 5.18897 5.25055 5.42138 5.64541 5.71884 5.80572 5.96599 6.12187 6.20952 6.23490 6.41074 6.66279 6.70757 6.82715 6.86920 6.92825 7.20678 7.26085 7.46747 7.52738 7.63039 7.85885 7.92863 8.05946 8.30394 8.48036 8.82254 9.47994 10.93088 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.028935 B = 0.002153 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.452063 B =12999.173487 C =13775.560320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.130 3.870 13 N -0.707 5.707 14 C 0.543 3.457 15 O -0.537 6.537 16 C -0.124 4.124 17 C -0.049 4.049 18 C -0.124 4.124 19 C -0.066 4.066 20 C -0.076 4.076 21 C 0.406 3.594 22 N -0.540 5.540 23 C 0.560 3.440 24 O -0.468 6.468 25 O -0.084 6.084 26 N -0.503 5.503 27 H 0.469 0.531 28 C 0.008 3.992 29 H 0.005 0.995 30 H 0.086 0.914 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.086 0.914 34 H 0.005 0.995 35 H 0.260 0.740 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.397 0.603 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.130 0.870 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.645 9.416 19.332 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.545 4.545 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.008 3.992 13 N -0.358 5.358 14 C 0.329 3.671 15 O -0.415 6.415 16 C -0.128 4.128 17 C -0.068 4.068 18 C -0.142 4.142 19 C -0.087 4.087 20 C -0.079 4.079 21 C 0.142 3.858 22 N -0.301 5.301 23 C 0.309 3.691 24 O -0.348 6.348 25 O -0.106 6.106 26 N -0.171 5.171 27 H 0.323 0.677 28 C -0.013 4.013 29 H 0.024 0.976 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.105 0.895 34 H 0.024 0.976 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.233 0.767 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.148 0.852 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.484 7.770 19.629 21.811 hybrid contribution -0.520 0.726 -0.249 0.927 sum -6.004 8.496 19.379 21.995 Atomic orbital electron populations 1.21847 0.97732 0.99312 1.00036 1.18371 0.92809 0.92784 0.90547 1.21846 0.98751 0.98297 1.00037 1.20970 1.31551 1.12145 0.89795 0.92345 1.24873 0.94827 0.94900 0.98889 1.69791 1.36698 1.22702 1.23296 0.86563 0.79376 0.79393 0.82508 1.20689 1.21268 1.19865 1.21822 0.98451 0.95947 0.82967 1.46259 1.52121 1.31572 1.05857 1.18098 0.81253 0.84475 0.83310 1.90801 1.38062 1.26003 1.86671 1.20216 1.00921 0.97329 0.94292 1.21788 0.92425 0.92536 1.00088 1.21027 1.01051 1.00954 0.91178 1.21238 0.94997 0.93694 0.98726 1.17384 1.04971 0.98949 0.86576 1.23213 0.86680 0.87335 0.88615 1.73653 1.26609 1.19104 1.10733 1.21789 0.80517 0.81028 0.85751 1.91200 1.44419 1.34587 1.64611 1.85227 1.61202 1.40467 1.23666 1.42441 1.47840 1.27303 0.99502 0.67680 1.21476 0.93149 0.97597 0.89069 0.97650 0.89492 0.95300 0.95290 0.89493 0.97642 0.92971 0.92280 0.92279 0.76663 0.84205 0.83897 0.85236 0.82320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 8.08 37.16 0.30 -2.44 16 2 C 0.06 1.20 0.50 -155.66 -0.08 1.12 16 3 C -0.13 -2.75 8.08 37.16 0.30 -2.44 16 4 C -0.51 -12.68 8.01 -34.44 -0.28 -12.95 16 5 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 6 C 0.07 1.68 5.15 -17.82 -0.09 1.59 16 7 N -0.89 -22.62 9.35 55.43 0.52 -22.10 16 8 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 C 0.13 2.57 4.50 -4.04 -0.02 2.55 16 13 N -0.71 -11.21 4.91 -61.24 -0.30 -11.51 16 14 C 0.54 8.54 7.77 -12.32 -0.10 8.44 16 15 O -0.54 -10.57 16.34 5.32 0.09 -10.48 16 16 C -0.12 -1.40 5.87 -105.02 -0.62 -2.01 16 17 C -0.05 -0.38 9.54 -39.10 -0.37 -0.75 16 18 C -0.12 -0.60 10.02 -39.70 -0.40 -0.99 16 19 C -0.07 -0.27 9.70 -39.11 -0.38 -0.65 16 20 C -0.08 -0.57 5.87 -105.01 -0.62 -1.19 16 21 C 0.41 3.42 7.80 -155.24 -1.21 2.20 16 22 N -0.54 -6.99 11.23 -14.89 -0.17 -7.15 16 23 C 0.56 7.62 9.59 53.45 0.51 8.13 16 24 O -0.47 -8.12 18.07 -19.20 -0.35 -8.46 16 25 O -0.08 -0.76 11.33 -7.45 -0.08 -0.85 16 26 N -0.50 -2.71 6.74 31.97 0.22 -2.49 16 27 H 0.47 0.09 8.01 -40.82 -0.33 -0.23 16 28 C 0.01 0.08 9.24 -38.78 -0.36 -0.27 16 29 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 30 H 0.09 2.03 6.07 -51.93 -0.32 1.72 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 2.03 6.07 -51.93 -0.32 1.72 16 34 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 35 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.40 5.37 4.19 -40.82 -0.17 5.20 16 39 H 0.14 0.94 6.39 -52.48 -0.34 0.61 16 40 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 41 H 0.13 -0.02 7.13 -52.48 -0.37 -0.39 16 42 H 0.16 2.04 7.45 -52.49 -0.39 1.65 16 LS Contribution 354.25 15.07 5.34 5.34 Total: -1.00 -33.56 354.25 -7.76 -41.32 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.60 Total: 0.95 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -3.40 Total: 0.33 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.27 Total: -43.26 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.34 Total: -19.79 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.56 -7.76 -41.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597762095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.103 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds