Wall clock time and date at job start Tue Mar 31 2020 16:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99740 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.46866 * 90.00390 * 8 6 4 10 10 H 1.48502 * 109.47245 * 210.00175 * 8 6 4 11 11 H 1.48494 * 109.47271 * 330.00312 * 8 6 4 12 12 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 13 13 N 1.46504 * 109.46883 * 300.00241 * 12 2 1 14 14 C 1.34775 * 119.99531 * 179.97438 * 13 12 2 15 15 O 1.21552 * 120.00294 * 0.02562 * 14 13 12 16 16 C 1.47862 * 120.00030 * 179.97438 * 14 13 12 17 17 C 1.39702 * 120.07366 * 0.02562 * 16 14 13 18 18 C 1.38048 * 120.14611 * 179.97438 * 17 16 14 19 19 C 1.38102 * 120.29333 * 0.05225 * 18 17 16 20 20 C 1.39647 * 120.14955 * 359.97438 * 19 18 17 21 21 C 1.47889 * 120.07704 * 179.97438 * 20 19 18 22 22 N 1.32680 * 126.35210 * 179.68538 * 21 20 19 23 23 C 1.34035 * 105.78224 * 179.88884 * 22 21 20 24 24 O 1.21926 * 126.41643 * 180.17636 * 23 22 21 25 25 O 1.34165 * 107.16958 * 0.37306 * 23 22 21 26 26 N 1.21321 * 109.82257 * 359.76357 * 25 23 22 27 27 H 0.97006 * 125.04005 * 180.02562 * 26 25 23 28 28 C 1.39302 * 120.07509 * 179.73000 * 16 14 13 29 29 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 30 30 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 31 31 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 34 34 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 35 35 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 36 36 H 1.09001 * 109.47002 * 59.99738 * 12 2 1 37 37 H 1.08993 * 109.46955 * 180.02562 * 12 2 1 38 38 H 0.96992 * 119.99966 * 359.97438 * 13 12 2 39 39 H 1.08005 * 119.92622 * 0.02562 * 17 16 14 40 40 H 1.08000 * 119.85435 * 180.02562 * 18 17 16 41 41 H 1.08004 * 119.92659 * 179.97438 * 19 18 17 42 42 H 1.07997 * 120.14897 * 359.97438 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.3427 -2.1620 -4.4117 10 1 2.4866 -0.1417 -5.1122 11 1 3.6293 -1.7585 -3.7120 12 6 2.0400 -0.7212 1.2494 13 7 1.5516 -0.0304 2.4455 14 6 1.8768 -0.4911 3.6696 15 8 2.5756 -1.4794 3.7812 16 6 1.3844 0.2063 4.8768 17 6 0.5815 1.3425 4.7504 18 6 0.1205 1.9945 5.8765 19 6 0.4500 1.5296 7.1345 20 6 1.2522 0.3952 7.2752 21 6 1.6045 -0.1009 8.6231 22 7 2.3490 -1.1636 8.9002 23 6 2.4045 -1.2311 10.2377 24 8 2.9976 -2.0685 10.8962 25 8 1.6816 -0.2072 10.7163 26 7 1.2243 0.4388 9.7968 27 1 0.6677 1.2275 9.8928 28 6 1.7149 -0.2718 6.1428 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.7095 1.1615 -3.4844 36 1 1.6766 -1.7488 1.2494 37 1 3.1299 -0.7208 1.2495 38 1 0.9942 0.7583 2.3564 39 1 0.3202 1.7112 3.7694 40 1 -0.5002 2.8722 5.7733 41 1 0.0864 2.0445 8.0116 42 1 2.3309 -1.1528 6.2461 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597762095.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:49 Heat of formation + Delta-G solvation = 5.794393 kcal Electronic energy + Delta-G solvation = -27131.033869 eV Core-core repulsion = 23079.454356 eV Total energy + Delta-G solvation = -4051.579513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.67509 -41.35364 -39.75084 -39.35861 -38.08471 -37.01918 -35.11247 -33.97306 -32.93506 -32.19997 -31.80006 -27.56710 -27.52437 -27.01507 -26.10969 -25.27266 -23.90865 -23.08827 -21.66805 -21.02568 -20.62258 -19.66709 -19.26012 -17.88652 -17.67280 -17.39887 -17.16554 -16.79925 -16.51797 -16.32090 -15.95597 -15.55794 -15.01411 -14.84220 -14.73023 -14.72131 -14.68907 -14.23723 -13.95847 -13.19943 -13.10648 -13.05954 -12.95129 -12.90029 -12.66716 -12.59334 -12.37003 -12.22284 -12.12116 -11.90531 -11.46122 -11.31097 -10.97541 -10.67873 -10.42851 -10.38400 -10.24437 -10.08835 -9.89622 -8.01373 -6.15938 -0.90469 -0.17289 0.50445 0.64347 1.42959 1.46723 1.54224 1.56477 1.78666 1.88498 2.23710 2.49395 2.70660 2.75178 3.22598 3.44879 3.62630 3.83082 3.97712 4.05881 4.26501 4.36529 4.47438 4.52619 4.54827 4.74645 4.89573 4.99949 5.06267 5.08455 5.14273 5.19543 5.22733 5.22911 5.35771 5.48282 5.57512 5.68246 5.70013 5.70999 6.19897 6.24090 6.24278 6.46102 6.61870 6.72330 6.87660 7.24664 7.51535 8.97314 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.028935 B = 0.002153 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.452063 B =12999.173487 C =13775.560320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.529 4.529 5 H 0.041 0.959 6 C 0.031 3.969 7 N -0.896 5.896 8 Si 0.941 3.059 9 H -0.280 1.280 10 H -0.282 1.282 11 H -0.279 1.279 12 C 0.146 3.854 13 N -0.699 5.699 14 C 0.542 3.458 15 O -0.590 6.590 16 C -0.149 4.149 17 C -0.043 4.043 18 C -0.109 4.109 19 C -0.031 4.031 20 C -0.078 4.078 21 C 0.418 3.582 22 N -0.587 5.587 23 C 0.556 3.444 24 O -0.524 6.524 25 O -0.070 6.070 26 N -0.468 5.468 27 H 0.496 0.504 28 C -0.011 4.011 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.016 0.984 32 H 0.016 0.984 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.260 0.740 36 H 0.039 0.961 37 H 0.038 0.962 38 H 0.411 0.589 39 H 0.153 0.847 40 H 0.190 0.810 41 H 0.189 0.811 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.381 13.282 21.000 26.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.051 3.949 3 C -0.180 4.180 4 C -0.567 4.567 5 H 0.060 0.940 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.768 3.232 9 H -0.206 1.206 10 H -0.208 1.208 11 H -0.204 1.204 12 C 0.022 3.978 13 N -0.351 5.351 14 C 0.330 3.670 15 O -0.472 6.472 16 C -0.152 4.152 17 C -0.062 4.062 18 C -0.126 4.126 19 C -0.050 4.050 20 C -0.081 4.081 21 C 0.154 3.846 22 N -0.351 5.351 23 C 0.305 3.695 24 O -0.408 6.408 25 O -0.092 6.092 26 N -0.137 5.137 27 H 0.356 0.644 28 C -0.032 4.032 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.250 0.750 39 H 0.170 0.830 40 H 0.207 0.793 41 H 0.206 0.794 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.303 11.753 21.297 25.703 hybrid contribution 0.239 -0.349 -0.744 0.856 sum -8.064 11.404 20.553 24.850 Atomic orbital electron populations 1.21687 0.96803 0.98760 1.00726 1.18365 0.93478 0.93153 0.89935 1.21687 0.97946 0.97620 1.00726 1.21268 1.31669 1.12115 0.91693 0.94041 1.25382 0.95210 0.95600 1.00728 1.69881 1.36937 1.23069 1.23578 0.85830 0.78579 0.78568 0.80226 1.20606 1.20760 1.20397 1.21329 0.97130 0.95197 0.84118 1.45984 1.52404 1.31811 1.04916 1.18840 0.79990 0.83807 0.84367 1.90769 1.40435 1.28512 1.87459 1.19743 1.04163 0.99479 0.91832 1.22020 0.91012 0.90921 1.02256 1.21551 0.99926 1.01288 0.89838 1.21883 0.91226 0.90956 1.00951 1.17355 1.06016 1.00130 0.84583 1.23197 0.85556 0.86242 0.89610 1.73612 1.29090 1.21872 1.10500 1.21740 0.80674 0.81306 0.85755 1.91142 1.47049 1.36942 1.65669 1.85204 1.60265 1.39563 1.24143 1.42586 1.46346 1.26851 0.97885 0.64356 1.21229 0.94046 0.97462 0.90494 0.93838 0.91751 0.96458 0.96447 0.91752 0.93830 0.92998 0.94290 0.94312 0.75008 0.82953 0.79313 0.79387 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.00 8.08 71.98 0.58 -4.42 16 2 C 0.05 2.24 0.50 -52.93 -0.03 2.21 16 3 C -0.12 -5.00 8.08 71.98 0.58 -4.42 16 4 C -0.53 -27.20 8.01 25.60 0.21 -26.99 16 5 H 0.04 2.21 7.74 -2.91 -0.02 2.19 16 6 C 0.03 1.58 5.15 84.65 0.44 2.01 16 7 N -0.90 -45.84 9.35 21.45 0.20 -45.64 16 8 Si 0.94 41.81 29.54 68.60 2.03 43.83 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.15 5.95 4.50 86.38 0.39 6.34 16 13 N -0.70 -21.95 4.91 -465.95 -2.29 -24.24 16 14 C 0.54 17.46 7.77 86.79 0.67 18.13 16 15 O -0.59 -24.92 16.34 -3.88 -0.06 -24.99 16 16 C -0.15 -3.18 5.87 -20.12 -0.12 -3.30 16 17 C -0.04 -0.48 9.54 22.58 0.22 -0.26 16 18 C -0.11 -0.28 10.02 22.19 0.22 -0.05 16 19 C -0.03 -0.04 9.70 22.58 0.22 0.18 16 20 C -0.08 -0.92 5.87 -20.12 -0.12 -1.04 16 21 C 0.42 6.07 7.80 136.74 1.07 7.14 16 22 N -0.59 -15.43 11.23 -432.47 -4.86 -20.29 16 23 C 0.56 15.32 9.59 130.00 1.25 16.57 16 24 O -0.52 -19.15 18.07 18.05 0.33 -18.82 16 25 O -0.07 -1.13 11.33 93.07 1.05 -0.07 16 26 N -0.47 -3.19 6.74 -53.58 -0.36 -3.56 16 27 H 0.50 -2.88 8.01 -92.70 -0.74 -3.62 16 28 C -0.01 -0.23 9.24 22.79 0.21 -0.02 16 29 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 30 H 0.06 2.97 6.07 -2.39 -0.01 2.95 16 31 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 2.96 6.07 -2.39 -0.01 2.95 16 34 H 0.04 1.40 6.86 -2.39 -0.02 1.39 16 35 H 0.26 12.86 8.31 -92.71 -0.77 12.09 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.41 10.17 4.19 -92.71 -0.39 9.79 16 39 H 0.15 1.30 6.39 -2.91 -0.02 1.28 16 40 H 0.19 -1.01 8.06 -2.91 -0.02 -1.03 16 41 H 0.19 -1.87 7.13 -2.91 -0.02 -1.89 16 42 H 0.12 3.47 7.45 -2.91 -0.02 3.45 16 Total: -1.00 -82.80 354.25 1.80 -81.00 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -0.03 Total: 0.72 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 5.79 Total: 12.05 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -7.30 Total: -93.72 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: 1.32 Total: -43.88 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -82.80 1.80 -81.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597762095.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.797 kcal (2) G-P(sol) polarization free energy of solvation -82.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds