Wall clock time and date at job start Tue Mar 31 2020 16:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3 10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5 11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5 12 12 H 1.48500 * 109.47266 * 150.00139 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34775 * 120.00282 * 84.99902 * 13 3 2 15 15 O 1.21285 * 120.00085 * 359.97438 * 14 13 3 16 16 C 1.50695 * 120.00356 * 180.02562 * 14 13 3 17 17 N 1.46492 * 109.47563 * 179.97438 * 16 14 13 18 18 N 1.40277 * 126.57804 * 269.68738 * 17 16 14 19 19 C 1.30152 * 107.74908 * 179.81896 * 18 17 16 20 20 C 1.47904 * 125.45991 * 180.12345 * 19 18 17 21 21 C 1.39536 * 120.14435 * 0.07360 * 20 19 18 22 22 C 1.37971 * 119.85601 * 179.69812 * 21 20 19 23 23 C 1.38343 * 120.14250 * 0.58277 * 22 21 20 24 24 C 1.38353 * 120.28631 * 359.71234 * 23 22 21 25 25 C 1.37972 * 120.13955 * 359.97438 * 24 23 22 26 26 O 1.35087 * 109.07094 * 0.44518 * 19 18 17 27 27 C 1.34308 * 108.86244 * 359.71226 * 26 19 18 28 28 O 1.21698 * 126.26171 * 180.02562 * 27 26 19 29 29 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 31 31 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 32 32 H 1.09000 * 109.47669 * 240.00169 * 2 1 3 33 33 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 34 34 H 0.97000 * 120.00114 * 354.93313 * 8 7 5 35 35 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 36 36 H 1.09003 * 109.47151 * 300.00291 * 16 14 13 37 37 H 1.09005 * 109.47073 * 59.99272 * 16 14 13 38 38 H 1.08004 * 120.06890 * 0.02562 * 21 20 19 39 39 H 1.07999 * 119.92909 * 180.29357 * 22 21 20 40 40 H 1.08003 * 119.85958 * 179.74086 * 23 22 21 41 41 H 1.07998 * 119.92990 * 180.02562 * 24 23 22 42 42 H 1.07992 * 120.07296 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9231 2.8819 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6599 -1.3861 15 8 -0.3353 2.6306 -0.4609 16 6 0.0616 3.3288 -2.6799 17 7 -1.2984 3.8615 -2.5669 18 7 -2.4880 3.1917 -2.8891 19 6 -3.4776 4.0014 -2.6462 20 6 -4.9097 3.6903 -2.8461 21 6 -5.2940 2.4400 -3.3320 22 6 -6.6319 2.1541 -3.5104 23 6 -7.5909 3.1079 -3.2200 24 6 -7.2162 4.3517 -2.7437 25 6 -5.8819 4.6480 -2.5549 26 8 -2.9865 5.1738 -2.1890 27 6 -1.6468 5.0932 -2.1383 28 8 -0.8863 5.9700 -1.7724 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.8788 0.5739 0.4635 35 1 2.2909 2.1165 -1.9977 36 1 0.7550 4.1434 -2.8893 37 1 0.1003 2.6014 -3.4908 38 1 -4.5460 1.6960 -3.5630 39 1 -6.9309 1.1851 -3.8819 40 1 -8.6367 2.8806 -3.3653 41 1 -7.9696 5.0919 -2.5185 42 1 -5.5906 5.6190 -2.1827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613038694.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:18 Heat of formation + Delta-G solvation = -35.885553 kcal Electronic energy + Delta-G solvation = -27790.262878 eV Core-core repulsion = 23736.875987 eV Total energy + Delta-G solvation = -4053.386891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.63675 -40.97503 -40.14169 -39.21909 -37.66715 -36.88522 -34.55119 -34.19489 -33.34006 -32.08515 -31.71879 -29.67458 -28.51875 -25.59932 -24.63341 -24.23270 -23.28076 -22.78955 -22.19743 -21.35225 -20.04503 -19.31597 -19.07042 -18.18584 -17.88253 -17.77514 -17.47511 -16.96859 -16.52262 -16.30496 -15.67948 -15.56383 -15.07465 -14.91911 -14.84276 -14.57988 -14.46845 -14.40321 -14.36622 -13.77086 -13.70625 -13.41755 -13.33207 -13.22378 -12.71955 -12.52822 -12.44054 -12.35112 -12.26324 -12.02531 -11.76537 -11.58824 -11.25989 -11.18348 -10.61717 -10.49666 -9.96850 -9.89413 -9.58260 -8.81666 -6.44422 -0.51649 0.24742 0.40624 0.82238 1.00397 1.28961 1.44066 1.44700 1.56718 1.66675 2.34573 2.39371 2.79042 2.81983 2.95512 3.46999 3.70164 3.90462 3.94500 4.01647 4.07461 4.18390 4.27818 4.28544 4.36454 4.45203 4.48341 4.53055 4.60263 4.82504 4.85137 5.05457 5.07641 5.17534 5.25133 5.33144 5.44123 5.51730 5.52017 5.58619 5.65346 5.91517 6.01177 6.04560 6.21664 6.52169 6.72022 7.23124 7.33211 8.56460 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.019467 B = 0.002763 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.998391 B =10132.483547 C =10719.816641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.125 4.125 3 C 0.253 3.747 4 H 0.017 0.983 5 C -0.617 4.617 6 H 0.047 0.953 7 C 0.003 3.997 8 N -0.922 5.922 9 Si 1.065 2.935 10 H -0.280 1.280 11 H -0.257 1.257 12 H -0.277 1.277 13 N -0.693 5.693 14 C 0.483 3.517 15 O -0.576 6.576 16 C 0.139 3.861 17 N -0.434 5.434 18 N -0.259 5.259 19 C 0.291 3.709 20 C -0.060 4.060 21 C -0.072 4.072 22 C -0.121 4.121 23 C -0.082 4.082 24 C -0.121 4.121 25 C -0.085 4.085 26 O -0.269 6.269 27 C 0.606 3.394 28 O -0.515 6.515 29 H 0.057 0.943 30 H 0.030 0.970 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.262 0.738 35 H 0.409 0.591 36 H 0.150 0.850 37 H 0.170 0.830 38 H 0.137 0.863 39 H 0.160 0.840 40 H 0.163 0.837 41 H 0.159 0.841 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.584 3.093 -15.149 31.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.163 4.163 3 C 0.148 3.852 4 H 0.035 0.965 5 C -0.654 4.654 6 H 0.065 0.935 7 C -0.199 4.199 8 N -0.557 5.557 9 Si 0.888 3.112 10 H -0.206 1.206 11 H -0.181 1.181 12 H -0.202 1.202 13 N -0.343 5.343 14 C 0.268 3.732 15 O -0.457 6.457 16 C 0.016 3.984 17 N -0.263 5.263 18 N -0.087 5.087 19 C 0.069 3.931 20 C -0.063 4.063 21 C -0.092 4.092 22 C -0.139 4.139 23 C -0.101 4.101 24 C -0.139 4.139 25 C -0.105 4.105 26 O -0.166 6.166 27 C 0.359 3.641 28 O -0.398 6.398 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.245 0.755 36 H 0.168 0.832 37 H 0.188 0.812 38 H 0.155 0.845 39 H 0.178 0.822 40 H 0.180 0.820 41 H 0.177 0.823 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -27.250 2.566 -12.908 30.262 hybrid contribution 1.201 1.246 -1.338 2.187 sum -26.049 3.812 -14.246 29.933 Atomic orbital electron populations 1.21731 0.95763 1.00257 1.00996 1.22090 0.94991 0.98123 1.01142 1.18827 0.93608 0.89688 0.83042 0.96486 1.22206 0.91264 1.47970 1.03993 0.93523 1.26614 0.97011 0.91796 1.04498 1.70917 1.11504 1.42563 1.30680 0.83753 0.76051 0.77739 0.73630 1.20628 1.18100 1.20244 1.45974 1.14924 1.55762 1.17637 1.21303 0.82359 0.79123 0.90403 1.90698 1.51820 1.60595 1.42541 1.21708 0.76737 1.02893 0.97044 1.49382 1.06187 1.10719 1.60051 1.77438 0.89619 1.19376 1.22316 1.24595 0.96266 0.78941 0.93262 1.17512 0.82283 0.97857 1.08604 1.21351 0.98305 0.93876 0.95703 1.21483 0.91103 1.01450 0.99864 1.21896 1.01585 0.92416 0.94168 1.21473 0.94905 0.98454 0.99054 1.21457 0.93297 0.98631 0.97149 1.85118 1.21942 1.36861 1.72644 1.19295 0.80366 0.84659 0.79829 1.91180 1.50962 1.44311 1.53335 0.92401 0.95080 0.93214 0.92051 0.93228 0.92835 0.75506 0.83200 0.81235 0.84500 0.82237 0.81972 0.82314 0.84746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 8.53 71.98 0.61 -4.48 16 2 C -0.12 -5.36 5.03 30.59 0.15 -5.20 16 3 C 0.25 11.86 1.78 44.25 0.08 11.94 16 4 H 0.02 0.91 5.99 -2.38 -0.01 0.89 16 5 C -0.62 -33.04 8.97 25.60 0.23 -32.81 16 6 H 0.05 2.61 7.96 -2.91 -0.02 2.58 16 7 C 0.00 0.17 5.25 84.65 0.44 0.61 16 8 N -0.92 -55.27 13.70 21.45 0.29 -54.97 16 9 Si 1.07 51.19 26.33 68.60 1.81 52.99 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.26 -11.73 5.88 99.48 0.59 -11.14 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 N -0.69 -26.15 5.03 -446.09 -2.24 -28.39 16 14 C 0.48 17.54 6.50 87.66 0.57 18.11 16 15 O -0.58 -25.93 13.57 -3.05 -0.04 -25.97 16 16 C 0.14 3.57 6.89 85.63 0.59 4.16 16 17 N -0.43 -13.21 3.13 -594.46 -1.86 -15.07 16 18 N -0.26 -7.19 12.16 -167.02 -2.03 -9.22 16 19 C 0.29 7.51 7.94 87.50 0.69 8.20 16 20 C -0.06 -1.13 5.87 -20.09 -0.12 -1.25 16 21 C -0.07 -1.07 9.68 22.52 0.22 -0.85 16 22 C -0.12 -1.08 10.03 22.23 0.22 -0.86 16 23 C -0.08 -0.55 10.04 22.32 0.22 -0.32 16 24 C -0.12 -1.06 10.03 22.23 0.22 -0.84 16 25 C -0.09 -1.25 9.71 22.52 0.22 -1.03 16 26 O -0.27 -8.12 10.43 12.71 0.13 -7.99 16 27 C 0.61 21.02 9.24 129.76 1.20 22.22 16 28 O -0.51 -20.78 17.92 18.80 0.34 -20.44 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.03 1.32 7.88 -2.39 -0.02 1.30 16 31 H 0.05 1.91 5.63 -2.38 -0.01 1.90 16 32 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.05 2.23 5.64 -2.39 -0.01 2.22 16 34 H 0.26 15.62 8.73 -92.71 -0.81 14.81 16 35 H 0.41 12.92 8.53 -92.71 -0.79 12.13 16 36 H 0.15 3.23 8.12 -2.39 -0.02 3.21 16 37 H 0.17 2.88 8.14 -2.38 -0.02 2.86 16 38 H 0.14 2.03 7.82 -2.91 -0.02 2.01 16 39 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 40 H 0.16 0.06 8.06 -2.91 -0.02 0.04 16 41 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 42 H 0.13 1.91 7.89 -2.91 -0.02 1.89 16 Total: -1.00 -78.14 360.64 2.08 -76.06 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.12 Total: 15.39 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: 5.56 Total: 17.61 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -5.84 Total: -107.65 kcal Atomic # 8 Polarization: -54.83 SS G_CDS: 0.43 Total: -54.40 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 1.81 Total: 52.99 kcal Total: -78.14 2.08 -76.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613038694.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.172 kcal (2) G-P(sol) polarization free energy of solvation -78.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds