Wall clock time and date at job start Tue Mar 31 2020 16:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29949 * 126.29368 * 2 1 4 4 O 1.21301 * 110.25132 * 180.02562 * 3 2 1 5 5 C 1.33631 * 109.81239 * 359.97438 * 4 3 2 6 6 C 1.50708 * 126.55135 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.47185 * 195.02465 * 6 5 4 8 8 C 1.53001 * 109.47338 * 75.01783 * 6 5 4 9 9 N 1.46507 * 109.46451 * 315.01980 * 6 5 4 10 10 C 1.34781 * 119.99539 * 204.99659 * 9 6 5 11 11 O 1.21282 * 120.00102 * 0.02562 * 10 9 6 12 12 C 1.50705 * 119.99728 * 180.02562 * 10 9 6 13 13 C 1.50698 * 109.46930 * 180.02562 * 12 10 9 14 14 C 1.38297 * 119.93202 * 89.99982 * 13 12 10 15 15 C 1.38101 * 120.07230 * 180.02562 * 14 13 12 16 16 C 1.38886 * 119.92536 * 359.97438 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47264 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47375 * 119.99795 * 22 20 18 25 25 H 1.48506 * 109.47301 * 239.99793 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38110 * 119.92772 * 359.48927 * 26 16 15 28 28 N 1.31133 * 106.90343 * 0.22405 * 5 4 3 29 29 H 1.09001 * 109.47251 * 89.97473 * 1 2 3 30 30 H 1.09000 * 109.47706 * 209.97971 * 1 2 3 31 31 H 1.09001 * 109.46941 * 329.98233 * 1 2 3 32 32 H 1.08997 * 109.46966 * 300.00436 * 8 6 5 33 33 H 1.08997 * 109.46411 * 60.00530 * 8 6 5 34 34 H 1.08997 * 109.46599 * 180.02562 * 8 6 5 35 35 H 0.96995 * 120.00045 * 25.00856 * 9 6 5 36 36 H 1.09003 * 109.46768 * 60.00063 * 12 10 9 37 37 H 1.09004 * 109.46918 * 300.00219 * 12 10 9 38 38 H 1.07999 * 119.96698 * 0.02562 * 14 13 12 39 39 H 1.07992 * 120.03608 * 179.97438 * 15 14 13 40 40 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 41 41 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 42 42 H 1.07996 * 119.96227 * 180.23396 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7122 -0.0005 5 6 3.5298 -0.6212 -0.0003 6 6 4.7968 -1.4372 -0.0014 7 1 4.5647 -2.4685 -0.2674 8 6 5.4289 -1.3996 1.3915 9 7 5.7354 -0.8803 -0.9788 10 6 6.6818 -1.6670 -1.5283 11 8 6.7562 -2.8360 -1.2140 12 6 7.6477 -1.0940 -2.5332 13 6 8.5955 -2.1726 -2.9906 14 6 8.2761 -2.9525 -4.0871 15 6 9.1423 -3.9421 -4.5084 16 6 10.3355 -4.1534 -3.8298 17 8 11.1893 -5.1250 -4.2418 18 6 10.8756 -5.7723 -5.3822 19 1 9.9395 -5.5669 -5.8798 20 6 11.7551 -6.7020 -5.9161 21 7 12.8958 -6.9520 -5.3102 22 14 11.3209 -7.5982 -7.4964 23 1 9.9923 -7.1402 -7.9762 24 1 12.3478 -7.3072 -8.5288 25 1 11.2771 -9.0604 -7.2403 26 6 10.6510 -3.3721 -2.7259 27 6 9.7828 -2.3808 -2.3125 28 7 2.3029 -1.0842 -0.0046 29 1 -0.3634 0.0005 -1.0277 30 1 -0.3634 -0.8901 0.5135 31 1 -0.3633 0.8898 0.5141 32 1 5.6610 -0.3684 1.6574 33 1 4.7305 -1.8140 2.1186 34 1 6.3455 -1.9894 1.3905 35 1 5.6758 0.0546 -1.2302 36 1 8.2133 -0.2840 -2.0726 37 1 7.0947 -0.7094 -3.3902 38 1 7.3482 -2.7874 -4.6146 39 1 8.8921 -4.5510 -5.3645 40 1 13.5108 -7.6025 -5.6835 41 1 11.5761 -3.5370 -2.1935 42 1 10.0293 -1.7705 -1.4563 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731981742.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:29 Heat of formation + Delta-G solvation = 29.520753 kcal Electronic energy + Delta-G solvation = -26610.262043 eV Core-core repulsion = 22559.711382 eV Total energy + Delta-G solvation = -4050.550661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -46.06957 -40.08328 -38.85801 -36.84805 -36.52228 -35.96606 -33.17287 -32.46707 -31.66036 -30.40872 -30.11848 -29.57248 -26.72967 -25.41352 -24.92457 -23.85029 -21.96658 -21.88012 -20.80870 -20.21314 -18.61435 -18.22300 -17.95660 -17.28770 -16.93197 -16.38965 -15.40715 -15.14134 -14.74545 -14.53598 -14.40630 -14.25626 -14.07593 -13.88977 -13.63279 -13.46575 -13.41042 -13.29357 -12.78329 -12.69020 -12.61601 -12.50554 -12.03045 -11.87935 -11.77198 -11.51022 -11.45912 -11.26394 -10.85635 -10.75247 -10.58714 -10.42698 -10.40118 -9.87293 -9.52907 -9.29953 -8.80598 -8.12719 -7.14682 -6.42708 -4.01072 0.61547 1.71985 2.19872 2.24411 2.27759 2.62356 2.74173 3.14168 3.15541 3.21168 3.32753 3.59543 3.98910 4.31525 4.51533 4.56293 4.74176 4.90190 4.92576 4.93547 5.05669 5.12800 5.18330 5.24482 5.26954 5.33485 5.39506 5.43574 5.54398 5.65384 5.74271 5.75283 5.86766 6.00565 6.24248 6.44196 6.72287 6.93334 7.07272 7.19755 7.27037 7.38938 7.47626 7.68040 7.86163 8.02798 8.11860 9.03170 9.73873 10.75457 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024475 B = 0.001963 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.761161 B =14259.622717 C =14822.280231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.169 3.831 3 N -0.383 5.383 4 O 0.080 5.920 5 C 0.179 3.821 6 C 0.242 3.758 7 H 0.133 0.867 8 C -0.164 4.164 9 N -0.740 5.740 10 C 0.516 3.484 11 O -0.510 6.510 12 C -0.077 4.077 13 C -0.173 4.173 14 C -0.056 4.056 15 C -0.233 4.233 16 C 0.157 3.843 17 O -0.178 6.178 18 C -0.390 4.390 19 H 0.093 0.907 20 C 0.038 3.962 21 N -0.863 5.863 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.192 4.192 27 C -0.058 4.058 28 N -0.470 5.470 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.404 0.596 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.126 0.874 40 H 0.269 0.731 41 H 0.117 0.883 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.633 16.308 10.285 27.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 N -0.091 5.091 4 O 0.022 5.978 5 C -0.043 4.043 6 C 0.135 3.865 7 H 0.151 0.849 8 C -0.223 4.223 9 N -0.396 5.396 10 C 0.304 3.696 11 O -0.382 6.382 12 C -0.117 4.117 13 C -0.174 4.174 14 C -0.074 4.074 15 C -0.252 4.252 16 C 0.104 3.896 17 O -0.081 6.081 18 C -0.467 4.467 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.211 4.211 27 C -0.077 4.077 28 N -0.204 5.204 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.239 0.761 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.122 0.878 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.135 0.865 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -19.797 15.682 10.550 27.371 hybrid contribution -0.283 -0.022 -0.905 0.948 sum -20.080 15.659 9.646 27.230 Atomic orbital electron populations 1.20174 0.82650 1.04835 1.04542 1.25996 1.00765 0.83259 1.00299 1.74656 0.89281 1.23788 1.21348 1.85273 1.22539 1.24527 1.65465 1.28952 0.97002 0.82261 0.96098 1.19322 0.79558 0.95931 0.91707 0.84909 1.22254 1.02673 1.03762 0.93583 1.46186 1.33806 1.14507 1.45133 1.21185 0.80593 0.86464 0.81391 1.90775 1.70479 1.16379 1.60613 1.20401 0.95589 0.98299 0.97418 1.18598 0.96694 1.01812 1.00337 1.20510 0.97350 0.94272 0.95276 1.21107 0.96432 1.03032 1.04619 1.19399 0.89497 0.88011 0.92737 1.83976 1.43721 1.41243 1.39196 1.21380 1.05222 1.20422 0.99632 0.89008 1.25293 0.94902 0.97092 0.99304 1.70048 1.08511 1.32447 1.38765 0.85646 0.78708 0.79046 0.80019 1.19111 1.20168 1.20165 1.20158 1.01914 0.99298 0.99742 1.20399 0.93234 0.96550 0.97482 1.71925 0.99427 1.29432 1.19609 0.89115 0.88821 0.89367 0.91350 0.90761 0.89305 0.76097 0.88551 0.88770 0.87833 0.85593 0.92101 0.86532 0.87301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.00 0.38 0.03 16 2 C 0.17 1.60 8.22 -156.37 -1.28 0.31 16 3 N -0.38 -3.91 12.16 30.90 0.38 -3.53 16 4 O 0.08 0.75 11.13 18.13 0.20 0.95 16 5 C 0.18 1.65 7.26 -13.06 -0.09 1.55 16 6 C 0.24 2.10 3.12 -69.07 -0.22 1.89 16 7 H 0.13 1.37 7.58 -51.93 -0.39 0.97 16 8 C -0.16 -1.20 9.47 37.16 0.35 -0.85 16 9 N -0.74 -6.27 5.07 -54.92 -0.28 -6.55 16 10 C 0.52 6.23 7.79 -10.98 -0.09 6.14 16 11 O -0.51 -8.54 15.70 5.56 0.09 -8.45 16 12 C -0.08 -0.87 5.83 -29.03 -0.17 -1.04 16 13 C -0.17 -2.87 4.38 -104.58 -0.46 -3.33 16 14 C -0.06 -1.03 9.69 -39.61 -0.38 -1.41 16 15 C -0.23 -5.15 9.17 -39.39 -0.36 -5.51 16 16 C 0.16 3.87 6.65 -39.11 -0.26 3.61 16 17 O -0.18 -5.15 9.76 0.05 0.00 -5.15 16 18 C -0.39 -11.03 9.49 30.89 0.29 -10.74 16 19 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 20 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 21 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 22 Si 0.94 20.73 29.55 -169.99 -5.02 15.71 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 26 C -0.19 -4.11 9.99 -39.39 -0.39 -4.50 16 27 C -0.06 -1.03 9.69 -39.60 -0.38 -1.42 16 28 N -0.47 -4.94 11.55 -9.87 -0.11 -5.05 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 2.38 8.45 -40.82 -0.34 2.04 16 36 H 0.10 0.82 8.09 -51.93 -0.42 0.40 16 37 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 38 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 39 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 40 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 42 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 371.01 15.07 5.59 5.59 Total: -1.00 -35.12 371.01 -6.65 -41.77 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -5.09 Total: 3.76 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -3.16 Total: -14.31 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.74 Total: -39.87 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.29 Total: -12.65 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.12 -6.65 -41.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731981742.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.290 kcal (2) G-P(sol) polarization free energy of solvation -35.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds