Wall clock time and date at job start Tue Mar 31 2020 16:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29949 * 126.29368 * 2 1 4 4 O 1.21301 * 110.25132 * 180.02562 * 3 2 1 5 5 C 1.33631 * 109.81239 * 359.97438 * 4 3 2 6 6 C 1.50708 * 126.55135 * 179.97438 * 5 4 3 7 7 H 1.09005 * 109.47185 * 195.02465 * 6 5 4 8 8 C 1.53001 * 109.47338 * 75.01783 * 6 5 4 9 9 N 1.46507 * 109.46451 * 315.01980 * 6 5 4 10 10 C 1.34781 * 119.99539 * 204.99659 * 9 6 5 11 11 O 1.21282 * 120.00102 * 0.02562 * 10 9 6 12 12 C 1.50705 * 119.99728 * 180.02562 * 10 9 6 13 13 C 1.50698 * 109.46930 * 180.02562 * 12 10 9 14 14 C 1.38297 * 119.93202 * 89.99982 * 13 12 10 15 15 C 1.38101 * 120.07230 * 180.02562 * 14 13 12 16 16 C 1.38886 * 119.92536 * 359.97438 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47264 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47375 * 119.99795 * 22 20 18 25 25 H 1.48506 * 109.47301 * 239.99793 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38110 * 119.92772 * 359.48927 * 26 16 15 28 28 N 1.31133 * 106.90343 * 0.22405 * 5 4 3 29 29 H 1.09001 * 109.47251 * 89.97473 * 1 2 3 30 30 H 1.09000 * 109.47706 * 209.97971 * 1 2 3 31 31 H 1.09001 * 109.46941 * 329.98233 * 1 2 3 32 32 H 1.08997 * 109.46966 * 300.00436 * 8 6 5 33 33 H 1.08997 * 109.46411 * 60.00530 * 8 6 5 34 34 H 1.08997 * 109.46599 * 180.02562 * 8 6 5 35 35 H 0.96995 * 120.00045 * 25.00856 * 9 6 5 36 36 H 1.09003 * 109.46768 * 60.00063 * 12 10 9 37 37 H 1.09004 * 109.46918 * 300.00219 * 12 10 9 38 38 H 1.07999 * 119.96698 * 0.02562 * 14 13 12 39 39 H 1.07992 * 120.03608 * 179.97438 * 15 14 13 40 40 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 41 41 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 42 42 H 1.07996 * 119.96227 * 180.23396 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7122 -0.0005 5 6 3.5298 -0.6212 -0.0003 6 6 4.7968 -1.4372 -0.0014 7 1 4.5647 -2.4685 -0.2674 8 6 5.4289 -1.3996 1.3915 9 7 5.7354 -0.8803 -0.9788 10 6 6.6818 -1.6670 -1.5283 11 8 6.7562 -2.8360 -1.2140 12 6 7.6477 -1.0940 -2.5332 13 6 8.5955 -2.1726 -2.9906 14 6 8.2761 -2.9525 -4.0871 15 6 9.1423 -3.9421 -4.5084 16 6 10.3355 -4.1534 -3.8298 17 8 11.1893 -5.1250 -4.2418 18 6 10.8756 -5.7723 -5.3822 19 1 9.9395 -5.5669 -5.8798 20 6 11.7551 -6.7020 -5.9161 21 7 12.8958 -6.9520 -5.3102 22 14 11.3209 -7.5982 -7.4964 23 1 9.9923 -7.1402 -7.9762 24 1 12.3478 -7.3072 -8.5288 25 1 11.2771 -9.0604 -7.2403 26 6 10.6510 -3.3721 -2.7259 27 6 9.7828 -2.3808 -2.3125 28 7 2.3029 -1.0842 -0.0046 29 1 -0.3634 0.0005 -1.0277 30 1 -0.3634 -0.8901 0.5135 31 1 -0.3633 0.8898 0.5141 32 1 5.6610 -0.3684 1.6574 33 1 4.7305 -1.8140 2.1186 34 1 6.3455 -1.9894 1.3905 35 1 5.6758 0.0546 -1.2302 36 1 8.2133 -0.2840 -2.0726 37 1 7.0947 -0.7094 -3.3902 38 1 7.3482 -2.7874 -4.6146 39 1 8.8921 -4.5510 -5.3645 40 1 13.5108 -7.6025 -5.6835 41 1 11.5761 -3.5370 -2.1935 42 1 10.0293 -1.7705 -1.4563 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731981742.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:29 Heat of formation + Delta-G solvation = 3.329668 kcal Electronic energy + Delta-G solvation = -26611.397774 eV Core-core repulsion = 22559.711382 eV Total energy + Delta-G solvation = -4051.686392 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.78210 -41.17575 -40.46712 -38.31847 -37.35393 -36.90593 -34.38954 -33.94318 -32.90643 -31.74499 -31.31863 -30.11402 -28.16682 -27.02486 -25.92128 -24.55199 -23.60045 -22.94955 -21.86746 -21.30257 -19.82231 -19.33809 -19.04878 -18.74688 -18.12895 -17.27429 -16.60486 -16.32913 -16.03242 -15.91779 -15.77201 -15.46988 -15.16224 -14.97964 -14.70131 -14.53071 -14.41905 -14.31951 -14.04684 -13.88626 -13.58187 -13.32438 -13.24928 -12.96642 -12.78440 -12.63185 -12.47509 -12.44992 -12.24394 -12.23003 -12.18027 -12.08615 -11.14892 -11.14368 -10.94061 -10.74725 -10.35321 -9.72182 -8.87128 -8.46194 -6.13975 -0.09327 0.65724 0.69671 1.03195 1.34782 1.43017 1.47167 1.53307 1.71479 1.91402 2.18405 2.66923 2.86859 2.96201 3.20360 3.55281 3.66884 3.86695 3.89500 4.06289 4.09844 4.20374 4.24520 4.38376 4.53528 4.55391 4.58477 4.61964 4.64903 4.76773 4.77815 4.82257 4.84983 5.05140 5.12628 5.15619 5.17371 5.24960 5.34627 5.60500 5.75211 5.81483 6.05091 6.26365 6.46678 6.98600 6.98696 7.24589 7.80835 8.77483 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024475 B = 0.001963 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.761161 B =14259.622717 C =14822.280231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.164 3.836 3 N -0.400 5.400 4 O 0.084 5.916 5 C 0.185 3.815 6 C 0.246 3.754 7 H 0.116 0.884 8 C -0.158 4.158 9 N -0.719 5.719 10 C 0.523 3.477 11 O -0.564 6.564 12 C -0.077 4.077 13 C -0.145 4.145 14 C -0.061 4.061 15 C -0.246 4.246 16 C 0.111 3.889 17 O -0.235 6.235 18 C -0.412 4.412 19 H 0.100 0.900 20 C -0.025 4.025 21 N -0.921 5.921 22 Si 1.019 2.981 23 H -0.252 1.252 24 H -0.266 1.266 25 H -0.269 1.269 26 C -0.207 4.207 27 C -0.054 4.054 28 N -0.494 5.494 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.421 0.579 36 H 0.138 0.862 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.115 0.885 40 H 0.272 0.728 41 H 0.112 0.888 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.539 19.310 10.529 31.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.108 4.108 3 N -0.109 5.109 4 O 0.027 5.973 5 C -0.037 4.037 6 C 0.139 3.861 7 H 0.134 0.866 8 C -0.217 4.217 9 N -0.376 5.376 10 C 0.311 3.689 11 O -0.441 6.441 12 C -0.116 4.116 13 C -0.146 4.146 14 C -0.079 4.079 15 C -0.265 4.265 16 C 0.061 3.939 17 O -0.142 6.142 18 C -0.488 4.488 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.176 1.176 24 H -0.191 1.191 25 H -0.194 1.194 26 C -0.226 4.226 27 C -0.072 4.072 28 N -0.228 5.228 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.259 0.741 36 H 0.156 0.844 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.132 0.868 40 H 0.081 0.919 41 H 0.130 0.870 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -22.759 18.784 10.820 31.430 hybrid contribution 0.379 -0.635 -0.752 1.054 sum -22.380 18.149 10.068 30.523 Atomic orbital electron populations 1.20383 0.80326 1.05957 1.05643 1.26663 1.02210 0.82649 0.99304 1.74646 0.89617 1.24266 1.22333 1.85253 1.22352 1.24270 1.65437 1.28921 0.96818 0.82328 0.95590 1.19254 0.79492 0.94969 0.92406 0.86598 1.22209 1.02077 1.04662 0.92765 1.45909 1.32508 1.14992 1.44176 1.21172 0.80878 0.85735 0.81111 1.90791 1.72081 1.18679 1.62556 1.20541 0.95059 0.97108 0.98865 1.19234 0.96510 1.01024 0.97874 1.20942 0.97722 0.93113 0.96084 1.21219 0.96519 1.04294 1.04471 1.19973 0.90448 0.88846 0.94600 1.83935 1.46009 1.43836 1.40385 1.21848 1.05875 1.20985 1.00115 0.88275 1.26602 0.94610 0.97801 1.03207 1.70191 1.10221 1.34245 1.41320 0.84520 0.79120 0.77504 0.74985 1.17571 1.19136 1.19411 1.20463 1.02869 1.00185 0.99108 1.20909 0.92723 0.95321 0.98266 1.71946 1.00142 1.30259 1.20472 0.87905 0.87934 0.88010 0.89660 0.90148 0.90490 0.74098 0.84371 0.85299 0.84499 0.86757 0.91874 0.87033 0.83114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.51 71.23 0.75 0.19 16 2 C 0.16 2.75 8.22 138.46 1.14 3.89 16 3 N -0.40 -7.26 12.16 -60.32 -0.73 -8.00 16 4 O 0.08 1.34 11.13 74.95 0.83 2.18 16 5 C 0.19 2.99 7.26 88.38 0.64 3.63 16 6 C 0.25 3.70 3.12 44.25 0.14 3.84 16 7 H 0.12 2.25 7.58 -2.38 -0.02 2.23 16 8 C -0.16 -1.96 9.47 71.98 0.68 -1.28 16 9 N -0.72 -9.43 5.07 -446.05 -2.26 -11.70 16 10 C 0.52 10.56 7.79 87.66 0.68 11.25 16 11 O -0.56 -17.67 15.70 -3.04 -0.05 -17.71 16 12 C -0.08 -1.29 5.83 29.10 0.17 -1.12 16 13 C -0.15 -4.31 4.38 -19.84 -0.09 -4.40 16 14 C -0.06 -2.12 9.69 22.25 0.22 -1.90 16 15 C -0.25 -11.13 9.17 22.39 0.21 -10.93 16 16 C 0.11 5.76 6.65 22.58 0.15 5.91 16 17 O -0.23 -14.62 9.76 -22.72 -0.22 -14.84 16 18 C -0.41 -24.74 9.49 67.92 0.64 -24.10 16 19 H 0.10 5.51 5.20 -2.91 -0.02 5.49 16 20 C -0.03 -1.46 5.49 84.84 0.47 -1.00 16 21 N -0.92 -57.74 13.67 21.62 0.30 -57.44 16 22 Si 1.02 43.95 29.55 68.60 2.03 45.98 16 23 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 C -0.21 -9.06 9.99 22.39 0.22 -8.84 16 27 C -0.05 -1.80 9.69 22.25 0.22 -1.58 16 28 N -0.49 -9.48 11.55 -303.19 -3.50 -12.99 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.42 2.92 8.45 -92.71 -0.78 2.14 16 36 H 0.14 1.34 8.09 -2.39 -0.02 1.32 16 37 H 0.13 1.45 8.08 -2.39 -0.02 1.43 16 38 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 39 H 0.11 5.31 5.64 -2.91 -0.02 5.29 16 40 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 41 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 42 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -84.23 371.01 2.92 -81.31 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.29 Total: 19.64 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 6.23 Total: -26.43 kcal Atomic # 7 Polarization: -83.92 SS G_CDS: -6.20 Total: -90.12 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: 0.56 Total: -30.38 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -84.23 2.92 -81.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731981742.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.644 kcal (2) G-P(sol) polarization free energy of solvation -84.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds