Wall clock time and date at job start Tue Mar 31 2020 16:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.26978 * 125.12115 * 2 1 4 4 N 1.39344 * 114.48917 * 179.97438 * 3 2 1 5 5 C 1.38986 * 125.65323 * 180.02562 * 4 3 2 6 6 C 1.39289 * 119.92935 * 179.70278 * 5 4 3 7 7 C 1.37105 * 120.06865 * 179.72038 * 6 5 4 8 8 C 1.39873 * 119.92703 * 0.55312 * 7 6 5 9 9 C 1.47407 * 120.06963 * 179.70286 * 8 7 6 10 10 O 1.21632 * 120.00355 * 142.43196 * 9 8 7 11 11 N 1.34787 * 119.99595 * 322.43004 * 9 8 7 12 12 C 1.36898 * 119.99747 * 186.36333 * 11 9 8 13 13 H 1.07996 * 120.00252 * 346.22660 * 12 11 9 14 14 C 1.39013 * 119.99843 * 166.22330 * 12 11 9 15 15 N 1.31386 * 120.00111 * 34.57671 * 14 12 11 16 16 Si 1.86798 * 120.00456 * 214.56914 * 14 12 11 17 17 H 1.48498 * 109.47097 * 89.99999 * 16 14 12 18 18 H 1.48498 * 109.47495 * 210.00618 * 16 14 12 19 19 H 1.48499 * 109.47051 * 330.00458 * 16 14 12 20 20 C 1.46498 * 119.99921 * 6.36424 * 11 9 8 21 21 C 1.50697 * 109.47323 * 107.09238 * 20 11 9 22 22 O 1.20828 * 119.99500 * 359.97438 * 21 20 11 23 23 O 1.34226 * 120.00234 * 179.97438 * 21 20 11 24 24 C 1.39876 * 119.86205 * 359.72125 * 8 7 6 25 25 C 1.37097 * 119.92735 * 0.02562 * 24 8 7 26 26 C 1.47237 * 108.69478 * 359.97438 * 4 3 2 27 27 C 1.51213 * 125.11687 * 179.68999 * 2 1 3 28 28 H 1.08999 * 109.47539 * 0.02713 * 1 2 3 29 29 H 1.08998 * 109.47684 * 240.02441 * 1 2 3 30 30 H 1.09001 * 109.47261 * 120.02780 * 1 2 3 31 31 H 1.07999 * 119.96033 * 0.02562 * 6 5 4 32 32 H 1.07995 * 120.03341 * 180.25427 * 7 6 5 33 33 H 0.96995 * 120.00523 * 179.97438 * 15 14 12 34 34 H 1.09001 * 109.46954 * 227.09137 * 20 11 9 35 35 H 1.09001 * 109.47337 * 347.08634 * 20 11 9 36 36 H 0.96699 * 116.99747 * 179.97438 * 23 21 20 37 37 H 1.08005 * 120.03483 * 179.97438 * 24 8 7 38 38 H 1.08002 * 119.96432 * 179.97438 * 25 24 8 39 39 H 1.08998 * 110.66231 * 118.43870 * 26 4 3 40 40 H 1.08994 * 110.66010 * 241.55888 * 26 4 3 41 41 H 1.08998 * 110.56206 * 298.58602 * 27 2 1 42 42 H 1.09002 * 110.55531 * 61.42400 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2375 1.0386 0.0000 4 7 3.6070 0.7815 0.0006 5 6 4.6116 1.7420 0.0012 6 6 5.9481 1.3498 0.0080 7 6 6.9414 2.2948 0.0028 8 6 6.6114 3.6541 0.0024 9 6 7.6768 4.6728 0.0035 10 8 7.5401 5.6965 -0.6389 11 7 8.8025 4.4697 0.7165 12 6 9.7340 5.4673 0.8238 13 1 9.6843 6.3251 0.1697 14 6 10.7437 5.3759 1.7749 15 7 11.2533 4.2044 2.0816 16 14 11.3763 6.9188 2.6167 17 1 10.5825 7.1730 3.8457 18 1 12.8046 6.7348 2.9792 19 1 11.2447 8.0753 1.6945 20 6 9.0293 3.1816 1.3764 21 6 10.0953 2.4177 0.6342 22 8 10.6123 2.8996 -0.3458 23 8 10.4706 1.2019 1.0618 24 6 5.2683 4.0447 0.0014 25 6 4.2797 3.0948 0.0013 26 6 3.8136 -0.6763 0.0016 27 6 2.3769 -1.2369 0.0067 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3634 -0.5134 0.8902 30 1 -0.3634 -0.5143 -0.8897 31 1 6.2022 0.3001 0.0123 32 1 7.9775 1.9900 0.0039 33 1 11.9581 4.1407 2.7450 34 1 9.3525 3.3515 2.4034 35 1 8.1037 2.6059 1.3774 36 1 11.1577 0.7504 0.5529 37 1 5.0103 5.0934 0.0015 38 1 3.2425 3.3957 0.0009 39 1 4.3486 -0.9896 -0.8948 40 1 4.3481 -0.9883 0.8988 41 1 2.1977 -1.8261 0.9060 42 1 2.1977 -1.8356 -0.8864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736747179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:36 Heat of formation + Delta-G solvation = -1.640507 kcal Electronic energy + Delta-G solvation = -28240.035289 eV Core-core repulsion = 24188.133374 eV Total energy + Delta-G solvation = -4051.901915 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.48753 -39.79435 -38.63538 -37.46719 -35.25461 -34.44180 -33.79672 -32.09500 -31.23901 -30.57156 -30.09927 -27.79621 -27.45283 -25.09049 -23.68616 -22.57656 -21.54005 -21.01814 -19.50615 -19.38514 -17.70309 -17.08521 -17.05407 -16.45697 -16.36980 -15.52975 -15.23746 -15.06914 -14.76834 -14.38730 -14.04924 -13.92910 -13.76866 -13.68074 -13.38276 -13.19638 -13.03892 -12.99678 -12.70571 -12.11663 -12.08244 -12.00965 -11.89918 -11.79311 -11.52942 -11.31950 -10.97043 -10.68901 -10.46290 -10.36062 -10.30031 -10.24964 -9.49119 -9.36421 -8.85469 -8.69116 -8.54423 -8.08029 -7.21632 -6.62008 -3.78610 1.29710 1.69345 2.11622 2.41548 3.15219 3.25496 3.31715 3.46093 3.62570 3.95841 3.99926 4.11336 4.16591 4.36935 4.47384 4.63691 4.71394 5.04276 5.11661 5.12878 5.18723 5.20405 5.21001 5.33986 5.44060 5.45331 5.54414 5.66647 5.76733 5.86857 5.91464 6.11123 6.33071 6.44986 6.57263 6.64437 6.65625 6.90423 6.96675 7.41699 7.48363 7.54546 7.84738 7.99784 8.35066 9.05704 9.07900 9.27768 9.84608 10.48162 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.020342 B = 0.003062 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.161896 B = 9141.800039 C = 9961.501272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.054 3.946 3 N -0.230 5.230 4 N -0.475 5.475 5 C 0.228 3.772 6 C -0.182 4.182 7 C -0.070 4.070 8 C -0.138 4.138 9 C 0.489 3.511 10 O -0.576 6.576 11 N -0.420 5.420 12 C -0.302 4.302 13 H 0.113 0.887 14 C 0.041 3.959 15 N -0.864 5.864 16 Si 0.919 3.081 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.267 1.267 20 C 0.112 3.888 21 C 0.494 3.506 22 O -0.501 6.501 23 O -0.534 6.534 24 C -0.036 4.036 25 C -0.165 4.165 26 C 0.081 3.919 27 C -0.131 4.131 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.122 0.878 32 H 0.132 0.868 33 H 0.274 0.726 34 H 0.122 0.878 35 H 0.103 0.897 36 H 0.391 0.609 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.221 -15.416 0.926 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.141 4.141 3 N -0.033 5.033 4 N -0.275 5.275 5 C 0.131 3.869 6 C -0.205 4.205 7 C -0.090 4.090 8 C -0.143 4.143 9 C 0.279 3.721 10 O -0.461 6.461 11 N -0.138 5.138 12 C -0.429 4.429 13 H 0.131 0.869 14 C -0.164 4.164 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.014 4.014 21 C 0.334 3.666 22 O -0.386 6.386 23 O -0.346 6.346 24 C -0.056 4.056 25 C -0.187 4.187 26 C -0.043 4.043 27 C -0.171 4.171 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.140 0.860 32 H 0.150 0.850 33 H 0.085 0.915 34 H 0.140 0.860 35 H 0.121 0.879 36 H 0.247 0.753 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.142 -13.604 0.676 21.121 hybrid contribution 1.433 -0.808 0.183 1.655 sum -14.709 -14.412 0.859 20.611 Atomic orbital electron populations 1.20258 0.85755 1.04090 1.03110 1.24990 0.97094 0.90730 1.01272 1.73748 0.90475 1.28132 1.10990 1.47935 0.99491 1.03469 1.76629 1.17330 0.85380 0.87417 0.96794 1.20295 0.89995 0.99686 1.10480 1.21230 0.99121 0.92016 0.96599 1.20112 0.94723 0.93451 1.05982 1.17647 0.82990 0.87623 0.83791 1.90627 1.80872 1.29930 1.44645 1.43479 1.16399 1.10143 1.43817 1.19658 1.07483 0.98912 1.16817 0.86906 1.25228 0.95737 0.98156 0.97234 1.69838 1.24411 1.24766 1.31266 0.86038 0.77150 0.82384 0.79956 1.20094 1.21239 1.19107 1.21691 0.95122 0.85444 0.99106 1.23516 0.83109 0.77758 0.82220 1.90621 1.53664 1.66823 1.27480 1.84520 1.57137 1.33030 1.59878 1.20858 0.90643 0.99700 0.94402 1.20478 1.00066 0.90242 1.07880 1.22668 0.97494 0.81120 1.03012 1.22271 0.92195 0.98113 1.04544 0.90349 0.90114 0.90129 0.85965 0.85039 0.91523 0.86014 0.87950 0.75267 0.84923 0.85201 0.90227 0.90175 0.88566 0.88627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.48 36.01 0.38 0.00 16 2 C 0.05 0.48 7.43 -79.07 -0.59 -0.11 16 3 N -0.23 -2.91 11.18 34.79 0.39 -2.53 16 4 N -0.48 -6.35 4.07 -57.47 -0.23 -6.59 16 5 C 0.23 3.55 6.71 -83.84 -0.56 2.98 16 6 C -0.18 -2.79 9.45 -39.60 -0.37 -3.16 16 7 C -0.07 -1.28 7.32 -39.38 -0.29 -1.56 16 8 C -0.14 -2.86 5.43 -104.94 -0.57 -3.43 16 9 C 0.49 12.51 7.30 -12.52 -0.09 12.42 16 10 O -0.58 -16.59 16.49 5.25 0.09 -16.50 16 11 N -0.42 -10.96 2.36 -117.33 -0.28 -11.24 16 12 C -0.30 -8.53 8.58 -15.00 -0.13 -8.66 16 13 H 0.11 3.40 7.41 -52.49 -0.39 3.01 16 14 C 0.04 1.07 5.06 -17.46 -0.09 0.98 16 15 N -0.86 -22.37 8.79 55.50 0.49 -21.88 16 16 Si 0.92 20.68 29.67 -169.99 -5.04 15.64 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 18 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 19 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 20 C 0.11 2.52 4.83 -5.20 -0.03 2.50 16 21 C 0.49 11.24 4.75 36.00 0.17 11.42 16 22 O -0.50 -13.43 16.36 -18.75 -0.31 -13.74 16 23 O -0.53 -9.76 13.42 -39.25 -0.53 -10.29 16 24 C -0.04 -0.67 9.59 -39.38 -0.38 -1.05 16 25 C -0.17 -2.70 9.60 -39.61 -0.38 -3.08 16 26 C 0.08 0.76 6.55 -3.00 -0.02 0.74 16 27 C -0.13 -0.90 6.97 -26.99 -0.19 -1.08 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.12 1.53 7.28 -52.49 -0.38 1.15 16 32 H 0.13 2.46 4.40 -52.49 -0.23 2.23 16 33 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.12 2.83 6.41 -51.93 -0.33 2.50 16 35 H 0.10 2.00 3.82 -51.93 -0.20 1.80 16 36 H 0.39 5.50 9.10 45.56 0.41 5.92 16 37 H 0.13 2.39 8.03 -52.48 -0.42 1.97 16 38 H 0.13 1.98 7.65 -52.49 -0.40 1.58 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 353.13 15.07 5.32 5.32 Total: -1.00 -36.01 353.13 -7.27 -43.28 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -4.04 Total: 9.62 kcal Atomic # 6 Polarization: 12.03 SS G_CDS: -3.13 Total: 8.90 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.37 Total: -42.23 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.75 Total: -40.53 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.04 Total: 15.64 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -36.01 -7.27 -43.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736747179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.640 kcal (2) G-P(sol) polarization free energy of solvation -36.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds