Wall clock time and date at job start Tue Mar 31 2020 16:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47344 * 2 1 4 4 N 1.30114 * 124.95104 * 269.97735 * 3 2 1 5 5 C 1.35783 * 109.64155 * 180.02562 * 4 3 2 6 6 C 1.39744 * 133.59328 * 179.97438 * 5 4 3 7 7 C 1.36606 * 119.88277 * 180.02562 * 6 5 4 8 8 C 1.38779 * 120.66533 * 359.97438 * 7 6 5 9 9 C 1.37849 * 120.45709 * 0.04365 * 8 7 6 10 10 C 1.38842 * 119.68958 * 359.97438 * 9 8 7 11 11 N 1.36034 * 124.95018 * 89.99927 * 3 2 1 12 12 C 1.46500 * 126.34952 * 359.94711 * 11 3 2 13 13 C 1.50699 * 109.47104 * 270.01388 * 12 11 3 14 14 O 1.21290 * 119.99997 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99815 * 179.97438 * 13 12 11 16 16 C 1.37097 * 119.99463 * 180.02562 * 15 13 12 17 17 H 1.07996 * 120.00284 * 16.51477 * 16 15 13 18 18 C 1.38953 * 119.99717 * 196.51173 * 16 15 13 19 19 N 1.31415 * 119.99825 * 21.64780 * 18 16 15 20 20 Si 1.86797 * 120.00306 * 201.64558 * 18 16 15 21 21 H 1.48501 * 109.47181 * 89.99978 * 20 18 16 22 22 H 1.48498 * 109.47237 * 210.00104 * 20 18 16 23 23 H 1.48505 * 109.46893 * 330.00142 * 20 18 16 24 24 C 1.46501 * 120.00117 * 0.02562 * 15 13 12 25 25 C 1.50700 * 109.47152 * 84.06444 * 24 15 13 26 26 O 1.20830 * 120.00182 * 359.97438 * 25 24 15 27 27 O 1.34221 * 119.99851 * 180.02562 * 25 24 15 28 28 H 1.09007 * 109.46667 * 299.99742 * 1 2 3 29 29 H 1.08995 * 109.47429 * 59.99495 * 1 2 3 30 30 H 1.09000 * 109.47510 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46723 * 239.99727 * 2 1 3 32 32 H 1.08995 * 109.47429 * 120.00505 * 2 1 3 33 33 H 1.07997 * 120.05999 * 0.30165 * 6 5 4 34 34 H 1.07998 * 119.66553 * 179.97438 * 7 6 5 35 35 H 1.08005 * 119.76817 * 180.02562 * 8 7 6 36 36 H 1.07997 * 120.15710 * 179.97438 * 9 8 7 37 37 H 1.09004 * 109.46856 * 30.01507 * 12 11 3 38 38 H 1.09005 * 109.47078 * 150.01286 * 12 11 3 39 39 H 0.96996 * 119.99974 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.46929 * 204.06588 * 24 15 13 41 41 H 1.09000 * 109.46789 * 324.06583 * 24 15 13 42 42 H 0.96708 * 117.00321 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2813 2.1234 -1.0665 5 6 2.7183 3.3580 -0.7080 6 6 3.1181 4.4858 -1.4297 7 6 3.5170 5.6118 -0.7670 8 6 3.5296 5.6496 0.6202 9 6 3.1397 4.5489 1.3528 10 6 2.7315 3.3955 0.6965 11 7 2.2922 2.1555 1.1150 12 6 2.1345 1.7130 2.5027 13 6 0.7412 2.0357 2.9776 14 8 -0.0431 2.5811 2.2303 15 7 0.3663 1.7172 4.2324 16 6 -0.9014 2.0103 4.6642 17 1 -1.6754 2.2436 3.9481 18 6 -1.1905 2.0070 6.0234 19 7 -0.2230 2.1497 6.9012 20 14 -2.9542 1.8000 6.6027 21 1 -3.2476 0.3563 6.7899 22 1 -3.1389 2.5139 7.8917 23 1 -3.8784 2.3652 5.5869 24 6 1.3135 1.0579 5.1349 25 6 2.1866 2.0956 5.7921 26 8 2.0336 3.2658 5.5330 27 8 3.1347 1.7198 6.6647 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.1075 4.4688 -2.5095 34 1 3.8257 6.4813 -1.3283 35 1 3.8473 6.5476 1.1293 36 1 3.1518 4.5835 2.4321 37 1 2.2985 0.6370 2.5617 38 1 2.8611 2.2264 3.1325 39 1 -0.4248 2.1478 7.8500 40 1 0.7645 0.5080 5.8992 41 1 1.9359 0.3667 4.5664 42 1 3.6697 2.4213 7.0610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737285122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:05 Heat of formation + Delta-G solvation = -37.286585 kcal Electronic energy + Delta-G solvation = -29384.324502 eV Core-core repulsion = 25330.876857 eV Total energy + Delta-G solvation = -4053.447645 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.92845 -39.65941 -38.37484 -37.16822 -35.49045 -34.76279 -33.73695 -33.25393 -31.99203 -30.24574 -28.51422 -28.07832 -27.48233 -24.67380 -24.26100 -21.91905 -21.54007 -21.32747 -20.27087 -18.93149 -17.42435 -17.25714 -17.10956 -16.86265 -16.42672 -15.87131 -15.38030 -15.13325 -14.66555 -14.44548 -14.34963 -14.19410 -13.92834 -13.69069 -13.51307 -13.40049 -12.76418 -12.41900 -12.37953 -12.01818 -11.84893 -11.79064 -11.60788 -11.40038 -11.22906 -11.16857 -11.10122 -10.88574 -10.61803 -10.53540 -10.48463 -10.23896 -9.86595 -9.64109 -9.24828 -8.84265 -8.14412 -7.95396 -7.75193 -6.64387 -4.09261 1.25470 1.82311 2.77593 2.99179 3.10442 3.13937 3.18946 3.20856 3.37109 3.85010 4.03500 4.17546 4.33566 4.46377 4.70348 4.77738 4.96343 5.11045 5.20276 5.22508 5.28214 5.36141 5.41933 5.56751 5.59033 5.71769 5.76830 5.85584 5.94289 6.00048 6.16769 6.19563 6.34233 6.41340 6.53920 6.76750 6.78459 6.83227 7.16560 7.28366 7.36157 7.38771 7.73546 8.14183 8.20659 8.79302 8.86255 9.06084 9.55211 10.44062 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013155 B = 0.004432 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.906123 B = 6315.623433 C = 7050.731176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.044 4.044 3 C 0.299 3.701 4 N -0.502 5.502 5 C 0.048 3.952 6 C -0.072 4.072 7 C -0.132 4.132 8 C -0.112 4.112 9 C -0.098 4.098 10 C 0.061 3.939 11 N -0.460 5.460 12 C 0.092 3.908 13 C 0.440 3.560 14 O -0.552 6.552 15 N -0.423 5.423 16 C -0.306 4.306 17 H 0.110 0.890 18 C 0.032 3.968 19 N -0.878 5.878 20 Si 0.932 3.068 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.268 1.268 24 C 0.140 3.860 25 C 0.486 3.514 26 O -0.501 6.501 27 O -0.533 6.533 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.273 0.727 40 H 0.134 0.866 41 H 0.077 0.923 42 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.752 -4.226 -5.115 10.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.083 4.083 3 C 0.033 3.967 4 N -0.222 5.222 5 C -0.070 4.070 6 C -0.092 4.092 7 C -0.152 4.152 8 C -0.132 4.132 9 C -0.119 4.119 10 C -0.049 4.049 11 N -0.148 5.148 12 C -0.034 4.034 13 C 0.227 3.773 14 O -0.433 6.433 15 N -0.143 5.143 16 C -0.433 4.433 17 H 0.128 0.872 18 C -0.171 4.171 19 N -0.518 5.518 20 Si 0.758 3.242 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.193 1.193 24 C 0.013 3.987 25 C 0.326 3.674 26 O -0.386 6.386 27 O -0.344 6.344 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.139 0.861 37 H 0.124 0.876 38 H 0.120 0.880 39 H 0.084 0.916 40 H 0.152 0.848 41 H 0.094 0.906 42 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 7.952 -4.217 -6.244 10.954 hybrid contribution -0.328 0.875 2.058 2.260 sum 7.624 -3.342 -4.186 9.317 Atomic orbital electron populations 1.21771 0.92867 1.02135 1.04081 1.20142 0.97487 0.86833 1.03853 1.23500 0.96672 0.95889 0.80604 1.70360 1.21264 1.03453 1.27077 1.18999 1.04103 0.93669 0.90259 1.19894 0.99477 0.90540 0.99284 1.20542 1.02640 0.97772 0.94284 1.20784 1.01109 0.97420 0.93904 1.20053 1.01320 0.90795 0.99729 1.18802 1.03433 0.87584 0.95050 1.44702 1.52871 1.10940 1.06286 1.21714 0.99340 1.01701 0.80659 1.20005 0.88381 0.84338 0.84607 1.90617 1.53037 1.44685 1.54945 1.43447 1.11350 1.51032 1.08484 1.19735 0.84748 1.46890 0.91937 0.87245 1.25266 1.00071 0.96205 0.95559 1.69781 1.32888 1.46444 1.02664 0.85825 0.81724 0.78479 0.78177 1.20068 1.20959 1.19253 1.20771 0.90891 0.91783 0.95260 1.23796 0.76822 0.90605 0.76183 1.90641 1.66518 1.20085 1.61405 1.84513 1.47376 1.45000 1.57495 0.90933 0.92042 0.91750 0.88557 0.90201 0.85840 0.85821 0.85674 0.86137 0.87558 0.87951 0.91623 0.84842 0.90562 0.74874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.89 37.16 0.37 -1.80 16 2 C -0.04 -0.59 6.23 -27.88 -0.17 -0.77 16 3 C 0.30 5.30 7.11 -154.82 -1.10 4.20 16 4 N -0.50 -9.60 11.27 -8.24 -0.09 -9.69 16 5 C 0.05 0.92 7.23 -84.70 -0.61 0.30 16 6 C -0.07 -1.15 10.05 -39.61 -0.40 -1.55 16 7 C -0.13 -1.84 9.96 -39.97 -0.40 -2.24 16 8 C -0.11 -1.68 10.03 -39.52 -0.40 -2.07 16 9 C -0.10 -1.76 10.05 -39.50 -0.40 -2.15 16 10 C 0.06 1.18 6.87 -83.99 -0.58 0.60 16 11 N -0.46 -8.63 2.29 -112.43 -0.26 -8.89 16 12 C 0.09 1.63 5.02 -5.19 -0.03 1.61 16 13 C 0.44 9.90 7.24 -10.98 -0.08 9.83 16 14 O -0.55 -14.61 15.15 5.55 0.08 -14.53 16 15 N -0.42 -9.72 2.18 -116.09 -0.25 -9.97 16 16 C -0.31 -7.87 9.34 -14.93 -0.14 -8.01 16 17 H 0.11 3.01 7.37 -52.49 -0.39 2.62 16 18 C 0.03 0.79 4.87 -17.46 -0.09 0.71 16 19 N -0.88 -21.60 9.28 55.50 0.52 -21.09 16 20 Si 0.93 19.50 29.60 -169.99 -5.03 14.47 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 C 0.14 2.69 4.97 -5.19 -0.03 2.67 16 25 C 0.49 9.74 5.86 36.01 0.21 9.95 16 26 O -0.50 -12.05 16.79 -18.75 -0.31 -12.37 16 27 O -0.53 -8.54 13.42 -39.23 -0.53 -9.06 16 28 H 0.07 1.30 6.94 -51.93 -0.36 0.94 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.08 0.89 7.01 -51.93 -0.36 0.53 16 33 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 36 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.11 1.45 6.27 -51.93 -0.33 1.13 16 38 H 0.10 1.76 7.52 -51.93 -0.39 1.37 16 39 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 40 H 0.13 2.70 6.37 -51.93 -0.33 2.37 16 41 H 0.08 1.11 6.69 -51.93 -0.35 0.76 16 42 H 0.39 4.78 9.10 45.56 0.41 5.19 16 LS Contribution 358.28 15.07 5.40 5.40 Total: -1.00 -34.53 358.28 -8.49 -43.02 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -4.18 Total: 11.44 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: -3.83 Total: 11.26 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.09 Total: -49.64 kcal Atomic # 8 Polarization: -35.20 SS G_CDS: -0.76 Total: -35.96 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.53 -8.49 -43.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737285122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.738 kcal (2) G-P(sol) polarization free energy of solvation -34.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds