Wall clock time and date at job start Tue Mar 31 2020 16:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47344 * 2 1 4 4 N 1.30114 * 124.95104 * 269.97735 * 3 2 1 5 5 C 1.35783 * 109.64155 * 180.02562 * 4 3 2 6 6 C 1.39744 * 133.59328 * 179.97438 * 5 4 3 7 7 C 1.36606 * 119.88277 * 180.02562 * 6 5 4 8 8 C 1.38779 * 120.66533 * 359.97438 * 7 6 5 9 9 C 1.37849 * 120.45709 * 0.04365 * 8 7 6 10 10 C 1.38842 * 119.68958 * 359.97438 * 9 8 7 11 11 N 1.36034 * 124.95018 * 89.99927 * 3 2 1 12 12 C 1.46500 * 126.34952 * 359.94711 * 11 3 2 13 13 C 1.50699 * 109.47104 * 270.01388 * 12 11 3 14 14 O 1.21290 * 119.99997 * 0.02562 * 13 12 11 15 15 N 1.34781 * 119.99815 * 179.97438 * 13 12 11 16 16 C 1.37097 * 119.99463 * 180.02562 * 15 13 12 17 17 H 1.07996 * 120.00284 * 16.51477 * 16 15 13 18 18 C 1.38953 * 119.99717 * 196.51173 * 16 15 13 19 19 N 1.31415 * 119.99825 * 21.64780 * 18 16 15 20 20 Si 1.86797 * 120.00306 * 201.64558 * 18 16 15 21 21 H 1.48501 * 109.47181 * 89.99978 * 20 18 16 22 22 H 1.48498 * 109.47237 * 210.00104 * 20 18 16 23 23 H 1.48505 * 109.46893 * 330.00142 * 20 18 16 24 24 C 1.46501 * 120.00117 * 0.02562 * 15 13 12 25 25 C 1.50700 * 109.47152 * 84.06444 * 24 15 13 26 26 O 1.20830 * 120.00182 * 359.97438 * 25 24 15 27 27 O 1.34221 * 119.99851 * 180.02562 * 25 24 15 28 28 H 1.09007 * 109.46667 * 299.99742 * 1 2 3 29 29 H 1.08995 * 109.47429 * 59.99495 * 1 2 3 30 30 H 1.09000 * 109.47510 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46723 * 239.99727 * 2 1 3 32 32 H 1.08995 * 109.47429 * 120.00505 * 2 1 3 33 33 H 1.07997 * 120.05999 * 0.30165 * 6 5 4 34 34 H 1.07998 * 119.66553 * 179.97438 * 7 6 5 35 35 H 1.08005 * 119.76817 * 180.02562 * 8 7 6 36 36 H 1.07997 * 120.15710 * 179.97438 * 9 8 7 37 37 H 1.09004 * 109.46856 * 30.01507 * 12 11 3 38 38 H 1.09005 * 109.47078 * 150.01286 * 12 11 3 39 39 H 0.96996 * 119.99974 * 179.97438 * 19 18 16 40 40 H 1.09000 * 109.46929 * 204.06588 * 24 15 13 41 41 H 1.09000 * 109.46789 * 324.06583 * 24 15 13 42 42 H 0.96708 * 117.00321 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2813 2.1234 -1.0665 5 6 2.7183 3.3580 -0.7080 6 6 3.1181 4.4858 -1.4297 7 6 3.5170 5.6118 -0.7670 8 6 3.5296 5.6496 0.6202 9 6 3.1397 4.5489 1.3528 10 6 2.7315 3.3955 0.6965 11 7 2.2922 2.1555 1.1150 12 6 2.1345 1.7130 2.5027 13 6 0.7412 2.0357 2.9776 14 8 -0.0431 2.5811 2.2303 15 7 0.3663 1.7172 4.2324 16 6 -0.9014 2.0103 4.6642 17 1 -1.6754 2.2436 3.9481 18 6 -1.1905 2.0070 6.0234 19 7 -0.2230 2.1497 6.9012 20 14 -2.9542 1.8000 6.6027 21 1 -3.2476 0.3563 6.7899 22 1 -3.1389 2.5139 7.8917 23 1 -3.8784 2.3652 5.5869 24 6 1.3135 1.0579 5.1349 25 6 2.1866 2.0956 5.7921 26 8 2.0336 3.2658 5.5330 27 8 3.1347 1.7198 6.6647 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.1075 4.4688 -2.5095 34 1 3.8257 6.4813 -1.3283 35 1 3.8473 6.5476 1.1293 36 1 3.1518 4.5835 2.4321 37 1 2.2985 0.6370 2.5617 38 1 2.8611 2.2264 3.1325 39 1 -0.4248 2.1478 7.8500 40 1 0.7645 0.5080 5.8992 41 1 1.9359 0.3667 4.5664 42 1 3.6697 2.4213 7.0610 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737285122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:04 Heat of formation + Delta-G solvation = -59.418724 kcal Electronic energy + Delta-G solvation = -29385.284224 eV Core-core repulsion = 25330.876857 eV Total energy + Delta-G solvation = -4054.407366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.24091 -41.27281 -40.01601 -38.41719 -37.10850 -36.43449 -35.16979 -34.38835 -33.82151 -31.54007 -29.78788 -29.67884 -28.97536 -26.43435 -25.43796 -23.23555 -22.94941 -22.71380 -21.74302 -20.39166 -19.11248 -18.81674 -18.45972 -18.38135 -17.88090 -17.43363 -16.86727 -16.43693 -16.27605 -16.00225 -15.81266 -15.78853 -15.20265 -14.91496 -14.87981 -14.64059 -14.42380 -13.87208 -13.62059 -13.56906 -13.49533 -13.29697 -12.88375 -12.72769 -12.54959 -12.45879 -12.42594 -12.37170 -12.21859 -12.16612 -11.99956 -11.64251 -11.58183 -11.01328 -10.99829 -10.58582 -9.95552 -9.26087 -9.06087 -8.50310 -6.02130 -0.01457 0.55231 1.30630 1.39703 1.45630 1.54207 1.61018 1.75281 1.80148 2.20674 2.48057 2.80628 2.91289 3.00545 3.15905 3.43250 3.56217 3.71984 3.84650 4.01781 4.11560 4.18000 4.20736 4.31039 4.39767 4.48453 4.58315 4.69401 4.71064 4.79478 4.86128 4.92334 5.02288 5.19464 5.34294 5.40902 5.50244 5.54727 5.57459 5.86219 5.91595 5.97045 6.12700 6.31525 6.87196 7.02151 7.19557 7.38314 7.78476 8.55493 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013155 B = 0.004432 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.906123 B = 6315.623433 C = 7050.731176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.043 4.043 3 C 0.290 3.710 4 N -0.524 5.524 5 C 0.018 3.982 6 C -0.082 4.082 7 C -0.120 4.120 8 C -0.104 4.104 9 C -0.127 4.127 10 C 0.029 3.971 11 N -0.470 5.470 12 C 0.104 3.896 13 C 0.436 3.564 14 O -0.604 6.604 15 N -0.432 5.432 16 C -0.338 4.338 17 H 0.076 0.924 18 C 0.007 3.993 19 N -0.887 5.887 20 Si 0.989 3.011 21 H -0.255 1.255 22 H -0.281 1.281 23 H -0.283 1.283 24 C 0.134 3.866 25 C 0.493 3.507 26 O -0.549 6.549 27 O -0.516 6.516 28 H 0.031 0.969 29 H 0.044 0.956 30 H 0.098 0.902 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.144 0.856 34 H 0.167 0.833 35 H 0.156 0.844 36 H 0.107 0.893 37 H 0.152 0.848 38 H 0.107 0.893 39 H 0.276 0.724 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.252 -5.222 -5.012 12.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 C 0.025 3.975 4 N -0.245 5.245 5 C -0.099 4.099 6 C -0.101 4.101 7 C -0.140 4.140 8 C -0.123 4.123 9 C -0.148 4.148 10 C -0.080 4.080 11 N -0.158 5.158 12 C -0.023 4.023 13 C 0.225 3.775 14 O -0.488 6.488 15 N -0.151 5.151 16 C -0.465 4.465 17 H 0.094 0.906 18 C -0.196 4.196 19 N -0.526 5.526 20 Si 0.813 3.187 21 H -0.180 1.180 22 H -0.207 1.207 23 H -0.208 1.208 24 C 0.009 3.991 25 C 0.335 3.665 26 O -0.438 6.438 27 O -0.328 6.328 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.116 0.884 31 H 0.140 0.860 32 H 0.126 0.874 33 H 0.162 0.838 34 H 0.185 0.815 35 H 0.174 0.826 36 H 0.125 0.875 37 H 0.170 0.830 38 H 0.125 0.875 39 H 0.086 0.914 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 9.509 -5.242 -6.100 12.454 hybrid contribution -0.737 1.275 2.033 2.510 sum 8.771 -3.967 -4.067 10.451 Atomic orbital electron populations 1.21686 0.93808 1.03367 1.01198 1.20390 0.96389 0.84903 1.06495 1.24309 0.95852 0.97227 0.80107 1.70338 1.22269 1.03951 1.27908 1.19530 1.05148 0.94623 0.90634 1.20322 0.99099 0.90221 1.00476 1.21017 1.00623 0.98383 0.94006 1.21236 0.99124 0.97326 0.94630 1.20214 1.03384 0.91821 0.99422 1.19219 1.04574 0.88413 0.95792 1.44833 1.53272 1.11089 1.06630 1.21675 0.95731 1.04365 0.80481 1.20772 0.89723 0.83075 0.83966 1.90577 1.55083 1.46869 1.56310 1.43538 1.11298 1.51094 1.09208 1.19531 0.85869 1.49098 0.92006 0.90621 1.25881 1.03323 0.95310 0.95063 1.69858 1.34030 1.45918 1.02781 0.85002 0.77458 0.79274 0.76985 1.17978 1.20693 1.20808 1.21004 0.90797 0.91910 0.95380 1.23852 0.76862 0.89833 0.75931 1.90637 1.68138 1.21967 1.63068 1.84444 1.46567 1.45511 1.56318 0.94957 0.93690 0.88364 0.86023 0.87352 0.83814 0.81528 0.82635 0.87480 0.83032 0.87538 0.91357 0.85589 0.85334 0.72579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 9.89 71.98 0.71 -3.35 16 2 C -0.04 -1.09 6.23 29.85 0.19 -0.91 16 3 C 0.29 10.25 7.11 137.92 0.98 11.23 16 4 N -0.52 -20.23 11.27 -179.97 -2.03 -22.26 16 5 C 0.02 0.71 7.23 39.45 0.29 0.99 16 6 C -0.08 -2.51 10.05 22.25 0.22 -2.28 16 7 C -0.12 -3.09 9.96 22.02 0.22 -2.87 16 8 C -0.10 -2.96 10.03 22.31 0.22 -2.74 16 9 C -0.13 -4.65 10.05 22.32 0.22 -4.42 16 10 C 0.03 1.14 6.87 38.86 0.27 1.41 16 11 N -0.47 -17.77 2.29 -509.63 -1.17 -18.94 16 12 C 0.10 3.61 5.02 85.63 0.43 4.04 16 13 C 0.44 20.16 7.24 87.66 0.63 20.79 16 14 O -0.60 -33.77 15.15 -3.06 -0.05 -33.82 16 15 N -0.43 -20.17 2.18 -639.60 -1.39 -21.57 16 16 C -0.34 -17.98 9.34 84.04 0.79 -17.19 16 17 H 0.08 4.45 7.37 -2.91 -0.02 4.43 16 18 C 0.01 0.33 4.87 84.93 0.41 0.74 16 19 N -0.89 -43.42 9.28 21.66 0.20 -43.22 16 20 Si 0.99 40.29 29.60 68.60 2.03 42.32 16 21 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 22 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 C 0.13 5.03 4.97 85.63 0.43 5.45 16 25 C 0.49 19.26 5.86 71.24 0.42 19.67 16 26 O -0.55 -26.59 16.79 21.95 0.37 -26.23 16 27 O -0.52 -15.37 13.42 -51.33 -0.69 -16.06 16 28 H 0.03 1.18 6.94 -2.38 -0.02 1.16 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.12 2.47 8.14 -2.38 -0.02 2.45 16 32 H 0.11 2.09 7.01 -2.39 -0.02 2.07 16 33 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 34 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 35 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 36 H 0.11 4.06 8.06 -2.91 -0.02 4.03 16 37 H 0.15 3.73 6.27 -2.38 -0.01 3.71 16 38 H 0.11 3.63 7.52 -2.38 -0.02 3.61 16 39 H 0.28 12.85 8.31 -92.71 -0.77 12.08 16 40 H 0.13 4.94 6.37 -2.39 -0.02 4.93 16 41 H 0.13 3.35 6.69 -2.39 -0.02 3.33 16 42 H 0.41 9.10 9.10 -74.05 -0.67 8.42 16 Total: -1.00 -80.68 358.28 4.11 -76.57 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.41 Total: 32.62 kcal Atomic # 6 Polarization: 24.14 SS G_CDS: 6.43 Total: 30.57 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -4.39 Total: -105.98 kcal Atomic # 8 Polarization: -75.74 SS G_CDS: -0.37 Total: -76.10 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Total: -80.68 4.11 -76.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737285122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.149 kcal (2) G-P(sol) polarization free energy of solvation -80.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds