Wall clock time and date at job start Tue Mar 31 2020 16:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46807 * 2 1 4 4 C 1.50699 * 110.53556 * 182.12965 * 3 2 1 5 5 C 1.38240 * 119.99556 * 27.59625 * 4 3 2 6 6 C 1.38237 * 119.99734 * 179.78694 * 5 4 3 7 7 C 1.38240 * 119.99833 * 0.44499 * 6 5 4 8 8 C 1.38227 * 119.99983 * 359.81111 * 7 6 5 9 9 C 1.38233 * 120.00292 * 207.87004 * 4 3 2 10 10 N 1.47307 * 110.59976 * 59.30209 * 3 2 1 11 11 C 1.34533 * 106.61815 * 241.32093 * 10 3 2 12 12 O 1.21542 * 123.76812 * 180.02562 * 11 10 3 13 13 N 1.33787 * 112.45953 * 359.97438 * 11 10 3 14 14 C 1.46500 * 124.17927 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.46944 * 90.02725 * 14 13 11 16 16 O 1.21292 * 120.00259 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99761 * 179.97438 * 15 14 13 18 18 C 1.37105 * 119.99976 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99986 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99677 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00253 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99496 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47399 * 299.99614 * 22 20 18 25 25 H 1.48498 * 109.47295 * 60.00221 * 22 20 18 26 26 C 1.34772 * 111.64091 * 0.23585 * 13 11 10 27 27 O 1.21236 * 127.15393 * 179.73330 * 26 13 11 28 28 H 1.08990 * 109.47515 * 59.99835 * 1 2 3 29 29 H 1.09000 * 109.46917 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46902 * 299.99742 * 1 2 3 31 31 H 1.08999 * 109.46902 * 240.00258 * 2 1 3 32 32 H 1.08994 * 109.47275 * 119.99719 * 2 1 3 33 33 H 1.07995 * 120.00054 * 0.02562 * 5 4 3 34 34 H 1.07998 * 120.00289 * 180.27294 * 6 5 4 35 35 H 1.08000 * 119.99809 * 179.82862 * 7 6 5 36 36 H 1.08007 * 120.00103 * 180.02562 * 8 7 6 37 37 H 1.08004 * 119.99907 * 359.97438 * 9 4 3 38 38 H 0.96997 * 126.69328 * 61.28145 * 10 3 2 39 39 H 1.09000 * 109.47175 * 330.02749 * 14 13 11 40 40 H 1.09004 * 109.47042 * 210.02708 * 14 13 11 41 41 H 0.96999 * 120.00043 * 0.02562 * 17 15 14 42 42 H 0.97000 * 119.99719 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5458 1.4709 -0.0524 5 6 4.2364 0.4301 -0.6446 6 6 5.6175 0.4582 -0.6966 7 6 6.3083 1.5227 -0.1484 8 6 5.6179 2.5609 0.4484 9 6 4.2366 2.5350 0.4965 10 7 1.5490 2.1658 1.1857 11 6 0.8016 3.1878 0.7308 12 8 0.2428 3.9899 1.4530 13 7 0.7432 3.2232 -0.6053 14 6 0.0001 4.2276 -1.3703 15 6 0.8978 5.4025 -1.6615 16 8 2.0455 5.4007 -1.2692 17 7 0.4257 6.4547 -2.3589 18 6 1.2422 7.5238 -2.6235 19 1 2.2639 7.5227 -2.2734 20 6 0.7552 8.6089 -3.3420 21 7 -0.4881 8.6105 -3.7675 22 14 1.8679 10.0652 -3.7030 23 1 1.1145 11.0836 -4.4779 24 1 2.3337 10.6612 -2.4250 25 1 3.0399 9.6089 -4.4926 26 6 1.4477 2.2173 -1.1605 27 8 1.5810 1.9818 -2.3422 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.6969 -0.4032 -1.0699 34 1 6.1570 -0.3528 -1.1631 35 1 7.3874 1.5434 -0.1866 36 1 6.1575 3.3929 0.8763 37 1 3.6971 3.3463 0.9627 38 1 1.7289 1.9474 2.1134 39 1 -0.8601 4.5626 -0.7908 40 1 -0.3417 3.7902 -2.3084 41 1 -0.4921 6.4559 -2.6730 42 1 -1.0658 7.8541 -3.5803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749608263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:37 Heat of formation + Delta-G solvation = -43.796584 kcal Electronic energy + Delta-G solvation = -29123.521631 eV Core-core repulsion = 25069.791692 eV Total energy + Delta-G solvation = -4053.729939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.70362 -39.37598 -38.44061 -38.25187 -36.46974 -35.17288 -34.23802 -32.72460 -31.28395 -31.16563 -30.88402 -28.49606 -26.71909 -24.50432 -23.75661 -22.84144 -22.14384 -21.74907 -20.34118 -19.63056 -18.09932 -17.89309 -17.62853 -16.94192 -16.29628 -15.88787 -15.71144 -15.51627 -15.10424 -14.84215 -14.45781 -14.32109 -14.15099 -14.04164 -13.76514 -13.66999 -13.62851 -13.44299 -12.89216 -12.79231 -12.19901 -12.01163 -11.80930 -11.55574 -11.34894 -11.27258 -11.11025 -10.95822 -10.74343 -10.20835 -10.13900 -9.97982 -9.89333 -9.60128 -9.58661 -9.01752 -8.90197 -8.46251 -8.09179 -6.78849 -3.92197 1.06062 1.30556 1.76393 2.29504 3.04380 3.19205 3.28597 3.34829 3.55131 3.58205 3.72998 4.02200 4.11537 4.24145 4.39286 4.74098 4.80283 4.86232 4.90230 4.96798 5.04268 5.08380 5.26658 5.31046 5.37333 5.45818 5.49664 5.55941 5.58480 5.64142 5.77608 5.82276 5.88082 5.92420 5.94655 6.29907 6.38253 6.42053 6.77137 6.84124 7.15846 7.48324 7.73389 8.03563 8.21693 8.52784 8.71913 9.40248 9.75962 10.64268 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013594 B = 0.003864 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.221329 B = 7245.161280 C = 8346.125645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.115 4.115 3 C 0.170 3.830 4 C -0.097 4.097 5 C -0.096 4.096 6 C -0.124 4.124 7 C -0.110 4.110 8 C -0.117 4.117 9 C -0.085 4.085 10 N -0.719 5.719 11 C 0.712 3.288 12 O -0.537 6.537 13 N -0.550 5.550 14 C 0.105 3.895 15 C 0.428 3.572 16 O -0.578 6.578 17 N -0.564 5.564 18 C -0.381 4.381 19 H 0.099 0.901 20 C -0.006 4.006 21 N -0.896 5.896 22 Si 1.092 2.908 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.544 3.456 27 O -0.459 6.459 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.437 0.563 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.378 0.622 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.321 -20.274 8.474 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.153 4.153 3 C 0.079 3.921 4 C -0.098 4.098 5 C -0.114 4.114 6 C -0.142 4.142 7 C -0.128 4.128 8 C -0.135 4.135 9 C -0.103 4.103 10 N -0.383 5.383 11 C 0.413 3.587 12 O -0.410 6.410 13 N -0.295 5.295 14 C -0.020 4.020 15 C 0.213 3.787 16 O -0.463 6.463 17 N -0.201 5.201 18 C -0.511 4.511 19 H 0.117 0.883 20 C -0.209 4.209 21 N -0.535 5.535 22 Si 0.917 3.083 23 H -0.203 1.203 24 H -0.209 1.209 25 H -0.209 1.209 26 C 0.329 3.671 27 O -0.328 6.328 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.282 0.718 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.211 0.789 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.843 -18.358 7.646 20.727 hybrid contribution -0.481 -1.446 0.928 1.784 sum 5.362 -19.803 8.574 22.236 Atomic orbital electron populations 1.21860 0.94535 1.02809 1.02538 1.21813 0.97066 0.91902 1.04537 1.20158 0.92492 0.94606 0.84842 1.19384 0.91630 0.96611 1.02191 1.21021 0.94407 0.97832 0.98190 1.21103 0.93960 0.98885 1.00239 1.21241 1.00037 0.94057 0.97489 1.21166 0.94012 0.98643 0.99694 1.21076 0.94562 0.96837 0.97836 1.45524 1.53700 1.30560 1.08566 1.15727 0.79625 0.81539 0.81840 1.91009 1.49622 1.41800 1.58595 1.45719 1.48226 1.27963 1.07551 1.21434 0.94746 0.88625 0.97199 1.19789 0.89039 0.84866 0.85016 1.90540 1.18689 1.80861 1.56165 1.41822 1.13474 1.16504 1.48319 1.20538 0.97683 0.96547 1.36297 0.88266 1.26548 0.98838 1.01222 0.94317 1.70901 1.05868 1.32731 1.43966 0.83132 0.74050 0.74224 0.76865 1.20287 1.20941 1.20948 1.20434 0.77035 0.80202 0.89384 1.90773 1.57405 1.69332 1.15255 0.92619 0.91277 0.91951 0.89027 0.89378 0.85354 0.85689 0.85880 0.85646 0.85631 0.71806 0.86989 0.87272 0.78917 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.40 37.16 0.35 -1.06 16 2 C -0.11 -1.00 4.68 -26.73 -0.13 -1.13 16 3 C 0.17 2.13 0.95 -133.25 -0.13 2.00 16 4 C -0.10 -1.25 4.95 -104.62 -0.52 -1.77 16 5 C -0.10 -1.05 9.17 -39.58 -0.36 -1.41 16 6 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 7 C -0.11 -1.16 10.05 -39.58 -0.40 -1.56 16 8 C -0.12 -1.45 10.05 -39.59 -0.40 -1.84 16 9 C -0.08 -1.19 9.35 -39.58 -0.37 -1.56 16 10 N -0.72 -8.94 4.13 -54.02 -0.22 -9.16 16 11 C 0.71 12.15 8.57 -88.02 -0.75 11.40 16 12 O -0.54 -10.87 17.48 5.33 0.09 -10.78 16 13 N -0.55 -9.83 2.09 -122.02 -0.26 -10.09 16 14 C 0.11 1.98 6.18 -5.20 -0.03 1.95 16 15 C 0.43 10.57 7.85 -10.99 -0.09 10.48 16 16 O -0.58 -16.35 16.01 5.55 0.09 -16.26 16 17 N -0.56 -14.52 5.28 -10.96 -0.06 -14.58 16 18 C -0.38 -10.92 9.68 -14.93 -0.14 -11.07 16 19 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 20 C -0.01 -0.17 5.50 -17.47 -0.10 -0.27 16 21 N -0.90 -25.22 13.68 55.50 0.76 -24.46 16 22 Si 1.09 24.59 29.92 -169.99 -5.09 19.50 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.54 9.15 5.55 -10.55 -0.06 9.09 16 27 O -0.46 -8.78 17.75 5.60 0.10 -8.68 16 28 H 0.05 0.59 7.13 -51.93 -0.37 0.22 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.57 7.64 -51.93 -0.40 0.17 16 31 H 0.09 0.74 6.50 -51.93 -0.34 0.41 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.13 1.11 6.14 -52.49 -0.32 0.78 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 37 H 0.13 1.97 7.44 -52.48 -0.39 1.58 16 38 H 0.44 4.12 8.96 -40.82 -0.37 3.76 16 39 H 0.11 1.89 7.86 -51.93 -0.41 1.48 16 40 H 0.11 1.79 8.00 -51.93 -0.42 1.38 16 41 H 0.38 8.84 6.73 -40.82 -0.27 8.57 16 42 H 0.26 7.07 6.77 -40.82 -0.28 6.79 16 LS Contribution 360.44 15.07 5.43 5.43 Total: -1.00 -37.26 360.44 -7.51 -44.77 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -4.84 Total: 12.69 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: -3.52 Total: 11.62 kcal Atomic # 7 Polarization: -58.52 SS G_CDS: 0.22 Total: -58.30 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: 0.28 Total: -35.72 kcal Atomic # 14 Polarization: 24.59 SS G_CDS: -5.09 Total: 19.50 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.26 -7.51 -44.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749608263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.975 kcal (2) G-P(sol) polarization free energy of solvation -37.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds