Wall clock time and date at job start Tue Mar 31 2020 16:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46807 * 2 1 4 4 C 1.50699 * 110.53556 * 182.12965 * 3 2 1 5 5 C 1.38240 * 119.99556 * 27.59625 * 4 3 2 6 6 C 1.38237 * 119.99734 * 179.78694 * 5 4 3 7 7 C 1.38240 * 119.99833 * 0.44499 * 6 5 4 8 8 C 1.38227 * 119.99983 * 359.81111 * 7 6 5 9 9 C 1.38233 * 120.00292 * 207.87004 * 4 3 2 10 10 N 1.47307 * 110.59976 * 59.30209 * 3 2 1 11 11 C 1.34533 * 106.61815 * 241.32093 * 10 3 2 12 12 O 1.21542 * 123.76812 * 180.02562 * 11 10 3 13 13 N 1.33787 * 112.45953 * 359.97438 * 11 10 3 14 14 C 1.46500 * 124.17927 * 179.97438 * 13 11 10 15 15 C 1.50696 * 109.46944 * 90.02725 * 14 13 11 16 16 O 1.21292 * 120.00259 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99761 * 179.97438 * 15 14 13 18 18 C 1.37105 * 119.99976 * 179.97438 * 17 15 14 19 19 H 1.07999 * 119.99986 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99677 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00253 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99496 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47399 * 299.99614 * 22 20 18 25 25 H 1.48498 * 109.47295 * 60.00221 * 22 20 18 26 26 C 1.34772 * 111.64091 * 0.23585 * 13 11 10 27 27 O 1.21236 * 127.15393 * 179.73330 * 26 13 11 28 28 H 1.08990 * 109.47515 * 59.99835 * 1 2 3 29 29 H 1.09000 * 109.46917 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46902 * 299.99742 * 1 2 3 31 31 H 1.08999 * 109.46902 * 240.00258 * 2 1 3 32 32 H 1.08994 * 109.47275 * 119.99719 * 2 1 3 33 33 H 1.07995 * 120.00054 * 0.02562 * 5 4 3 34 34 H 1.07998 * 120.00289 * 180.27294 * 6 5 4 35 35 H 1.08000 * 119.99809 * 179.82862 * 7 6 5 36 36 H 1.08007 * 120.00103 * 180.02562 * 8 7 6 37 37 H 1.08004 * 119.99907 * 359.97438 * 9 4 3 38 38 H 0.96997 * 126.69328 * 61.28145 * 10 3 2 39 39 H 1.09000 * 109.47175 * 330.02749 * 14 13 11 40 40 H 1.09004 * 109.47042 * 210.02708 * 14 13 11 41 41 H 0.96999 * 120.00043 * 0.02562 * 17 15 14 42 42 H 0.97000 * 119.99719 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5458 1.4709 -0.0524 5 6 4.2364 0.4301 -0.6446 6 6 5.6175 0.4582 -0.6966 7 6 6.3083 1.5227 -0.1484 8 6 5.6179 2.5609 0.4484 9 6 4.2366 2.5350 0.4965 10 7 1.5490 2.1658 1.1857 11 6 0.8016 3.1878 0.7308 12 8 0.2428 3.9899 1.4530 13 7 0.7432 3.2232 -0.6053 14 6 0.0001 4.2276 -1.3703 15 6 0.8978 5.4025 -1.6615 16 8 2.0455 5.4007 -1.2692 17 7 0.4257 6.4547 -2.3589 18 6 1.2422 7.5238 -2.6235 19 1 2.2639 7.5227 -2.2734 20 6 0.7552 8.6089 -3.3420 21 7 -0.4881 8.6105 -3.7675 22 14 1.8679 10.0652 -3.7030 23 1 1.1145 11.0836 -4.4779 24 1 2.3337 10.6612 -2.4250 25 1 3.0399 9.6089 -4.4926 26 6 1.4477 2.2173 -1.1605 27 8 1.5810 1.9818 -2.3422 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.6969 -0.4032 -1.0699 34 1 6.1570 -0.3528 -1.1631 35 1 7.3874 1.5434 -0.1866 36 1 6.1575 3.3929 0.8763 37 1 3.6971 3.3463 0.9627 38 1 1.7289 1.9474 2.1134 39 1 -0.8601 4.5626 -0.7908 40 1 -0.3417 3.7902 -2.3084 41 1 -0.4921 6.4559 -2.6730 42 1 -1.0658 7.8541 -3.5803 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749608263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:37 Heat of formation + Delta-G solvation = -70.056021 kcal Electronic energy + Delta-G solvation = -29124.660326 eV Core-core repulsion = 25069.791692 eV Total energy + Delta-G solvation = -4054.868634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.95805 -40.58561 -40.10044 -39.70672 -37.68900 -36.77134 -36.12949 -33.75773 -33.25960 -32.13077 -31.76560 -30.07810 -27.75020 -26.51754 -24.86801 -23.85037 -23.25257 -22.93431 -21.67115 -21.16424 -20.11230 -19.20560 -19.00480 -18.33938 -17.57304 -17.28758 -17.07460 -16.82109 -16.34470 -16.14213 -15.94024 -15.86638 -15.53581 -15.48646 -15.10681 -14.85872 -14.69396 -14.49337 -14.35330 -13.75903 -13.49728 -13.46537 -12.93634 -12.83049 -12.77600 -12.44611 -12.24734 -12.13164 -11.98498 -11.93647 -11.76753 -11.62949 -11.56645 -11.41754 -10.72923 -10.40771 -10.21777 -9.91036 -9.82719 -9.00835 -6.15683 0.10208 0.40897 0.48289 1.00523 1.43108 1.51029 1.77851 1.80983 1.83762 1.97567 2.37329 2.59373 2.89038 3.00290 3.07207 3.15657 3.51256 3.76660 3.87714 3.99279 4.02990 4.03858 4.14559 4.22119 4.27073 4.28934 4.42752 4.52118 4.56106 4.71582 4.91707 4.94374 4.98850 5.06438 5.22535 5.43427 5.47824 5.50719 5.53488 5.66526 5.86266 5.86947 5.98733 6.18979 6.43511 6.59090 6.94398 7.28644 7.72308 8.46373 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.013594 B = 0.003864 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.221329 B = 7245.161280 C = 8346.125645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.109 4.109 3 C 0.179 3.821 4 C -0.112 4.112 5 C -0.096 4.096 6 C -0.120 4.120 7 C -0.109 4.109 8 C -0.135 4.135 9 C -0.114 4.114 10 N -0.694 5.694 11 C 0.707 3.293 12 O -0.577 6.577 13 N -0.560 5.560 14 C 0.112 3.888 15 C 0.424 3.576 16 O -0.619 6.619 17 N -0.572 5.572 18 C -0.413 4.413 19 H 0.072 0.928 20 C -0.036 4.036 21 N -0.908 5.908 22 Si 1.134 2.866 23 H -0.268 1.268 24 H -0.273 1.273 25 H -0.272 1.272 26 C 0.534 3.466 27 O -0.488 6.488 28 H 0.033 0.967 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.156 0.844 34 H 0.160 0.840 35 H 0.151 0.849 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.452 0.548 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.388 0.612 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.267 -22.822 8.344 25.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.147 4.147 3 C 0.089 3.911 4 C -0.114 4.114 5 C -0.114 4.114 6 C -0.138 4.138 7 C -0.127 4.127 8 C -0.153 4.153 9 C -0.132 4.132 10 N -0.359 5.359 11 C 0.408 3.592 12 O -0.453 6.453 13 N -0.304 5.304 14 C -0.014 4.014 15 C 0.211 3.789 16 O -0.506 6.506 17 N -0.210 5.210 18 C -0.542 4.542 19 H 0.090 0.910 20 C -0.235 4.235 21 N -0.547 5.547 22 Si 0.953 3.047 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.198 1.198 26 C 0.322 3.678 27 O -0.358 6.358 28 H 0.052 0.948 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.140 0.860 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.169 0.831 36 H 0.147 0.853 37 H 0.113 0.887 38 H 0.300 0.700 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.223 0.777 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.780 -20.969 7.542 23.293 hybrid contribution -0.713 -0.723 0.974 1.407 sum 6.067 -21.692 8.516 24.081 Atomic orbital electron populations 1.21880 0.94568 1.04113 1.01186 1.21943 0.96944 0.88964 1.06810 1.20321 0.92461 0.96002 0.82329 1.19469 0.91453 0.97197 1.03243 1.21391 0.95102 0.97747 0.97123 1.21573 0.93823 0.99334 0.99036 1.21607 1.01523 0.93316 0.96240 1.21352 0.93548 0.99824 1.00532 1.21011 0.95534 0.96967 0.99698 1.45403 1.51840 1.29023 1.09593 1.15890 0.79859 0.81991 0.81433 1.90973 1.51563 1.43488 1.59251 1.45879 1.48539 1.27942 1.08011 1.21372 0.93935 0.86930 0.99132 1.20825 0.89207 0.85695 0.83205 1.90509 1.20873 1.81915 1.57297 1.41844 1.13779 1.16483 1.48875 1.20513 0.97286 0.98400 1.37969 0.91013 1.27888 0.99403 1.03045 0.93177 1.70965 1.06289 1.32973 1.44426 0.82648 0.72969 0.71713 0.77408 1.19236 1.19878 1.19770 1.21239 0.76317 0.80033 0.90172 1.90740 1.58306 1.70121 1.16640 0.94806 0.88646 0.92490 0.87637 0.86044 0.82605 0.82202 0.83148 0.85336 0.88653 0.70033 0.84942 0.84684 0.77717 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.40 71.98 0.68 -1.76 16 2 C -0.11 -1.57 4.68 30.60 0.14 -1.42 16 3 C 0.18 4.29 0.95 2.24 0.00 4.29 16 4 C -0.11 -2.77 4.95 -19.87 -0.10 -2.86 16 5 C -0.10 -1.79 9.17 22.27 0.20 -1.59 16 6 C -0.12 -1.98 10.05 22.27 0.22 -1.76 16 7 C -0.11 -2.04 10.05 22.27 0.22 -1.82 16 8 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 9 C -0.11 -3.27 9.35 22.27 0.21 -3.06 16 10 N -0.69 -17.09 4.13 -443.25 -1.83 -18.92 16 11 C 0.71 24.67 8.57 179.44 1.54 26.21 16 12 O -0.58 -24.06 17.48 -3.85 -0.07 -24.12 16 13 N -0.56 -20.33 2.09 -777.21 -1.63 -21.96 16 14 C 0.11 4.27 6.18 85.63 0.53 4.80 16 15 C 0.42 21.66 7.85 87.66 0.69 22.35 16 16 O -0.62 -36.64 16.01 -3.07 -0.05 -36.69 16 17 N -0.57 -30.36 5.28 -306.98 -1.62 -31.98 16 18 C -0.41 -24.38 9.68 84.04 0.81 -23.56 16 19 H 0.07 4.57 7.16 -2.91 -0.02 4.55 16 20 C -0.04 -1.99 5.50 84.93 0.47 -1.52 16 21 N -0.91 -51.27 13.68 21.66 0.30 -50.98 16 22 Si 1.13 49.50 29.92 68.60 2.05 51.55 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 25 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 26 C 0.53 17.95 5.55 87.94 0.49 18.43 16 27 O -0.49 -18.61 17.75 -2.89 -0.05 -18.66 16 28 H 0.03 0.66 7.13 -2.39 -0.02 0.65 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 0.93 7.64 -2.39 -0.02 0.91 16 31 H 0.11 1.30 6.50 -2.39 -0.02 1.28 16 32 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.16 2.00 6.14 -2.91 -0.02 1.98 16 34 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 35 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.10 3.23 7.44 -2.91 -0.02 3.21 16 38 H 0.45 8.26 8.96 -92.71 -0.83 7.43 16 39 H 0.13 4.50 7.86 -2.39 -0.02 4.48 16 40 H 0.14 4.43 8.00 -2.38 -0.02 4.41 16 41 H 0.39 18.64 6.73 -92.71 -0.62 18.02 16 42 H 0.26 14.23 6.77 -92.71 -0.63 13.60 16 Total: -1.00 -84.44 360.44 3.21 -81.23 By element: Atomic # 1 Polarization: 37.10 SS G_CDS: -0.22 Total: 36.88 kcal Atomic # 6 Polarization: 27.31 SS G_CDS: 6.33 Total: 33.64 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -4.78 Total: -123.84 kcal Atomic # 8 Polarization: -79.31 SS G_CDS: -0.17 Total: -79.48 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 2.05 Total: 51.55 kcal Total: -84.44 3.21 -81.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749608263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.176 kcal (2) G-P(sol) polarization free energy of solvation -84.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds