Wall clock time and date at job start Tue Mar 31 2020 16:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.46965 * 2 1 4 4 N 1.30835 * 125.96213 * 305.02506 * 3 2 1 5 5 C 1.33232 * 109.82926 * 179.97438 * 4 3 2 6 6 C 1.50697 * 125.52797 * 180.02562 * 5 4 3 7 7 O 1.45206 * 109.47317 * 89.99761 * 6 5 4 8 8 C 1.34226 * 117.00074 * 180.02562 * 7 6 5 9 9 O 1.20825 * 120.00352 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.99946 * 179.97438 * 8 7 6 11 11 C 1.50695 * 109.47436 * 179.97438 * 10 8 7 12 12 C 1.38300 * 119.93634 * 269.73208 * 11 10 8 13 13 C 1.38103 * 120.07235 * 179.72038 * 12 11 10 14 14 C 1.38881 * 119.92859 * 0.56979 * 13 12 11 15 15 O 1.35743 * 120.07033 * 179.67702 * 14 13 12 16 16 C 1.34829 * 117.00323 * 174.48588 * 15 14 13 17 17 H 1.08000 * 119.99772 * 5.06302 * 16 15 14 18 18 C 1.38655 * 120.00285 * 185.06067 * 16 15 14 19 19 N 1.31556 * 119.99986 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99817 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47529 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47049 * 119.99936 * 20 18 16 23 23 H 1.48497 * 109.46877 * 239.99598 * 20 18 16 24 24 C 1.38884 * 119.86119 * 359.70391 * 14 13 12 25 25 C 1.38100 * 119.93123 * 0.02562 * 24 14 13 26 26 N 1.30713 * 108.95057 * 0.26022 * 5 4 3 27 27 N 1.34422 * 125.96012 * 124.99969 * 3 2 1 28 28 H 0.97004 * 126.82737 * 0.02562 * 27 3 2 29 29 H 1.08999 * 109.47109 * 299.99842 * 1 2 3 30 30 H 1.08997 * 109.47077 * 60.00028 * 1 2 3 31 31 H 1.08998 * 109.46730 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47109 * 240.00158 * 2 1 3 33 33 H 1.08997 * 109.47077 * 119.99972 * 2 1 3 34 34 H 1.09005 * 109.47398 * 329.99792 * 6 5 4 35 35 H 1.09003 * 109.47495 * 210.00074 * 6 5 4 36 36 H 1.08999 * 109.47119 * 60.00078 * 10 8 7 37 37 H 1.09004 * 109.47334 * 300.00224 * 10 8 7 38 38 H 1.08004 * 119.96372 * 359.97187 * 12 11 10 39 39 H 1.07998 * 120.03412 * 180.26808 * 13 12 11 40 40 H 0.97002 * 119.99992 * 180.02562 * 19 18 16 41 41 H 1.07996 * 120.03050 * 179.97438 * 24 14 13 42 42 H 1.08003 * 119.96708 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 1.7154 2.3479 -0.8672 5 6 2.3418 3.4839 -0.5637 6 6 2.2294 4.7773 -1.3288 7 8 1.1362 5.5657 -0.7887 8 6 0.9008 6.7555 -1.3637 9 8 1.5858 7.1263 -2.2874 10 6 -0.2178 7.6290 -0.8572 11 6 -0.2692 8.8993 -1.6664 12 6 0.4588 10.0040 -1.2636 13 6 0.4183 11.1677 -2.0062 14 6 -0.3638 11.2316 -3.1521 15 8 -0.4108 12.3760 -3.8806 16 6 -1.0967 12.3355 -5.0407 17 1 -1.6453 11.4459 -5.3128 18 6 -1.0976 13.4359 -5.8843 19 7 -0.4290 14.5193 -5.5531 20 14 -2.0485 13.3798 -7.4913 21 1 -2.7102 12.0576 -7.6292 22 1 -3.0766 14.4514 -7.4957 23 1 -1.1139 13.5860 -8.6267 24 6 -1.0982 10.1223 -3.5508 25 6 -1.0491 8.9597 -2.8070 26 7 3.0738 3.2933 0.5024 27 7 2.8838 1.9571 0.8913 28 1 3.2895 1.5092 1.6501 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0375 4.5622 -2.3800 35 1 3.1607 5.3362 -1.2366 36 1 -0.0423 7.8730 0.1906 37 1 -1.1651 7.0983 -0.9528 38 1 1.0628 9.9554 -0.3696 39 1 0.9904 12.0287 -1.6935 40 1 -0.4300 15.2892 -6.1431 41 1 -1.7076 10.1690 -4.4412 42 1 -1.6196 8.0966 -3.1168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754816208.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:39 Heat of formation + Delta-G solvation = -6.466320 kcal Electronic energy + Delta-G solvation = -26098.481682 eV Core-core repulsion = 22046.370504 eV Total energy + Delta-G solvation = -4052.111178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.64777 -40.40361 -38.95027 -36.98168 -36.14911 -34.82548 -33.23629 -32.49684 -31.55284 -30.84960 -30.14851 -28.30783 -26.58248 -25.12428 -24.84156 -22.06049 -21.95287 -21.46015 -20.78555 -20.14022 -18.46009 -17.97736 -17.63479 -16.99163 -16.54633 -16.36728 -16.02048 -15.17868 -14.82272 -14.65280 -14.59373 -14.32397 -13.92794 -13.66019 -13.50739 -13.44763 -13.21370 -12.71620 -12.62627 -12.50948 -12.46054 -12.12402 -11.87647 -11.69885 -11.52443 -11.27149 -10.89318 -10.82696 -10.78034 -10.67540 -10.59360 -10.45798 -10.40451 -10.29279 -9.96162 -9.31071 -8.81771 -8.14726 -7.18117 -6.43527 -4.01902 1.02700 1.91499 2.13667 2.26201 2.33265 2.38378 3.04896 3.14913 3.16544 3.21593 3.52296 3.98601 4.03144 4.17882 4.55131 4.58239 4.63246 4.89366 4.91611 5.07823 5.10675 5.15332 5.25347 5.26084 5.32858 5.38256 5.41529 5.66398 5.68158 5.74344 5.77314 5.85496 5.87325 6.22846 6.39600 6.43196 6.53561 6.71493 6.92206 7.06768 7.24366 7.36591 7.45920 7.60966 7.83331 7.90312 8.01840 9.02235 9.72089 10.74480 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.025432 B = 0.001809 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.705845 B =15470.456714 C =15958.599915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 C 0.286 3.714 4 N -0.522 5.522 5 C 0.231 3.769 6 C 0.163 3.837 7 O -0.358 6.358 8 C 0.459 3.541 9 O -0.487 6.487 10 C -0.048 4.048 11 C -0.184 4.184 12 C -0.056 4.056 13 C -0.192 4.192 14 C 0.159 3.841 15 O -0.176 6.176 16 C -0.391 4.391 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.862 5.862 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.233 4.233 25 C -0.052 4.052 26 N -0.291 5.291 27 N -0.478 5.478 28 H 0.442 0.558 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.269 0.731 41 H 0.128 0.872 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.766 -28.471 13.420 31.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C 0.008 3.992 4 N -0.251 5.251 5 C -0.052 4.052 6 C 0.086 3.914 7 O -0.275 6.275 8 C 0.301 3.699 9 O -0.372 6.372 10 C -0.085 4.085 11 C -0.185 4.185 12 C -0.075 4.075 13 C -0.211 4.211 14 C 0.105 3.895 15 O -0.079 6.079 16 C -0.467 4.467 17 H 0.111 0.889 18 C -0.166 4.166 19 N -0.497 5.497 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.201 1.201 24 C -0.252 4.252 25 C -0.071 4.071 26 N -0.122 5.122 27 N -0.197 5.197 28 H 0.288 0.712 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.079 0.921 41 H 0.146 0.854 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.342 -27.316 13.041 30.453 hybrid contribution -0.007 -0.584 -0.348 0.680 sum 3.335 -27.900 12.692 30.833 Atomic orbital electron populations 1.21708 0.92459 1.02674 1.03626 1.20207 0.98012 0.85682 1.04487 1.24503 0.90399 0.97565 0.86757 1.70313 1.27361 0.99341 1.28076 1.23609 0.93755 0.94890 0.92937 1.20753 0.90507 0.84165 0.95957 1.86526 1.50330 1.31077 1.59573 1.24263 0.85345 0.79292 0.81006 1.90723 1.47330 1.71949 1.27190 1.20099 0.95185 0.92457 1.00774 1.18630 1.06290 0.93773 0.99774 1.20434 0.96806 0.92129 0.98085 1.20161 1.04719 0.99142 0.97087 1.19405 0.92215 0.86510 0.91342 1.83974 1.64755 1.27809 1.31406 1.21397 1.28442 1.02228 0.94642 0.88932 1.25304 0.97444 0.94609 0.99210 1.70051 1.38946 1.03559 1.37101 0.85636 0.78832 0.78749 0.80147 1.19060 1.20150 1.20141 1.21115 1.06419 0.94085 1.03616 1.20547 0.96733 0.96582 0.93207 1.78055 1.24810 0.93498 1.15803 1.48056 1.37035 1.08996 1.25638 0.71231 0.92411 0.90811 0.91242 0.88043 0.89530 0.88096 0.88577 0.87709 0.87676 0.87149 0.86402 0.92063 0.85433 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.87 37.16 0.37 -0.24 16 2 C -0.04 -0.16 6.56 -27.88 -0.18 -0.34 16 3 C 0.29 2.25 7.51 -155.70 -1.17 1.08 16 4 N -0.52 -5.96 11.16 -8.16 -0.09 -6.05 16 5 C 0.23 2.83 7.78 -156.86 -1.22 1.61 16 6 C 0.16 2.01 6.09 36.00 0.22 2.23 16 7 O -0.36 -4.89 10.20 -39.25 -0.40 -5.29 16 8 C 0.46 6.85 7.95 36.00 0.29 7.14 16 9 O -0.49 -8.96 15.78 -18.75 -0.30 -9.26 16 10 C -0.05 -0.63 5.94 -29.04 -0.17 -0.80 16 11 C -0.18 -3.20 4.38 -104.58 -0.46 -3.66 16 12 C -0.06 -1.04 9.69 -39.61 -0.38 -1.42 16 13 C -0.19 -4.17 9.99 -39.39 -0.39 -4.57 16 14 C 0.16 3.95 6.65 -39.10 -0.26 3.69 16 15 O -0.18 -5.12 9.76 0.07 0.00 -5.12 16 16 C -0.39 -11.09 9.49 30.89 0.29 -10.79 16 17 H 0.09 2.44 5.20 -52.49 -0.27 2.16 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 20 Si 0.94 20.80 29.55 -169.99 -5.02 15.78 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 C -0.23 -5.20 9.17 -39.39 -0.36 -5.56 16 25 C -0.05 -0.99 9.69 -39.61 -0.38 -1.37 16 26 N -0.29 -3.35 12.80 32.42 0.41 -2.94 16 27 N -0.48 -3.60 7.45 32.62 0.24 -3.36 16 28 H 0.44 1.54 8.96 -182.33 -1.63 -0.10 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 34 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 35 H 0.10 1.13 8.13 -51.93 -0.42 0.70 16 36 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 37 H 0.11 1.15 8.08 -51.93 -0.42 0.73 16 38 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 39 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.13 2.84 5.64 -52.49 -0.30 2.54 16 42 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 373.37 15.07 5.63 5.63 Total: -1.00 -36.49 373.37 -9.09 -45.58 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -6.41 Total: 1.84 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -3.92 Total: -12.03 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 1.33 Total: -37.13 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.70 Total: -19.67 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.49 -9.09 -45.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754816208.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.110 kcal (2) G-P(sol) polarization free energy of solvation -36.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds