Wall clock time and date at job start Tue Mar 31 2020 16:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 109.46965 * 2 1 4 4 N 1.30835 * 125.96213 * 305.02506 * 3 2 1 5 5 C 1.33232 * 109.82926 * 179.97438 * 4 3 2 6 6 C 1.50697 * 125.52797 * 180.02562 * 5 4 3 7 7 O 1.45206 * 109.47317 * 89.99761 * 6 5 4 8 8 C 1.34226 * 117.00074 * 180.02562 * 7 6 5 9 9 O 1.20825 * 120.00352 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.99946 * 179.97438 * 8 7 6 11 11 C 1.50695 * 109.47436 * 179.97438 * 10 8 7 12 12 C 1.38300 * 119.93634 * 269.73208 * 11 10 8 13 13 C 1.38103 * 120.07235 * 179.72038 * 12 11 10 14 14 C 1.38881 * 119.92859 * 0.56979 * 13 12 11 15 15 O 1.35743 * 120.07033 * 179.67702 * 14 13 12 16 16 C 1.34829 * 117.00323 * 174.48588 * 15 14 13 17 17 H 1.08000 * 119.99772 * 5.06302 * 16 15 14 18 18 C 1.38655 * 120.00285 * 185.06067 * 16 15 14 19 19 N 1.31556 * 119.99986 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99817 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47529 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47049 * 119.99936 * 20 18 16 23 23 H 1.48497 * 109.46877 * 239.99598 * 20 18 16 24 24 C 1.38884 * 119.86119 * 359.70391 * 14 13 12 25 25 C 1.38100 * 119.93123 * 0.02562 * 24 14 13 26 26 N 1.30713 * 108.95057 * 0.26022 * 5 4 3 27 27 N 1.34422 * 125.96012 * 124.99969 * 3 2 1 28 28 H 0.97004 * 126.82737 * 0.02562 * 27 3 2 29 29 H 1.08999 * 109.47109 * 299.99842 * 1 2 3 30 30 H 1.08997 * 109.47077 * 60.00028 * 1 2 3 31 31 H 1.08998 * 109.46730 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47109 * 240.00158 * 2 1 3 33 33 H 1.08997 * 109.47077 * 119.99972 * 2 1 3 34 34 H 1.09005 * 109.47398 * 329.99792 * 6 5 4 35 35 H 1.09003 * 109.47495 * 210.00074 * 6 5 4 36 36 H 1.08999 * 109.47119 * 60.00078 * 10 8 7 37 37 H 1.09004 * 109.47334 * 300.00224 * 10 8 7 38 38 H 1.08004 * 119.96372 * 359.97187 * 12 11 10 39 39 H 1.07998 * 120.03412 * 180.26808 * 13 12 11 40 40 H 0.97002 * 119.99992 * 180.02562 * 19 18 16 41 41 H 1.07996 * 120.03050 * 179.97438 * 24 14 13 42 42 H 1.08003 * 119.96708 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 1.7154 2.3479 -0.8672 5 6 2.3418 3.4839 -0.5637 6 6 2.2294 4.7773 -1.3288 7 8 1.1362 5.5657 -0.7887 8 6 0.9008 6.7555 -1.3637 9 8 1.5858 7.1263 -2.2874 10 6 -0.2178 7.6290 -0.8572 11 6 -0.2692 8.8993 -1.6664 12 6 0.4588 10.0040 -1.2636 13 6 0.4183 11.1677 -2.0062 14 6 -0.3638 11.2316 -3.1521 15 8 -0.4108 12.3760 -3.8806 16 6 -1.0967 12.3355 -5.0407 17 1 -1.6453 11.4459 -5.3128 18 6 -1.0976 13.4359 -5.8843 19 7 -0.4290 14.5193 -5.5531 20 14 -2.0485 13.3798 -7.4913 21 1 -2.7102 12.0576 -7.6292 22 1 -3.0766 14.4514 -7.4957 23 1 -1.1139 13.5860 -8.6267 24 6 -1.0982 10.1223 -3.5508 25 6 -1.0491 8.9597 -2.8070 26 7 3.0738 3.2933 0.5024 27 7 2.8838 1.9571 0.8913 28 1 3.2895 1.5092 1.6501 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0375 4.5622 -2.3800 35 1 3.1607 5.3362 -1.2366 36 1 -0.0423 7.8730 0.1906 37 1 -1.1651 7.0983 -0.9528 38 1 1.0628 9.9554 -0.3696 39 1 0.9904 12.0287 -1.6935 40 1 -0.4300 15.2892 -6.1431 41 1 -1.7076 10.1690 -4.4412 42 1 -1.6196 8.0966 -3.1168 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754816208.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:39 Heat of formation + Delta-G solvation = -30.072520 kcal Electronic energy + Delta-G solvation = -26099.505324 eV Core-core repulsion = 22046.370504 eV Total energy + Delta-G solvation = -4053.134819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.36165 -41.61560 -40.67502 -38.53686 -37.51174 -35.31653 -34.42059 -33.95227 -33.03758 -31.79684 -31.55610 -29.35910 -28.06384 -26.98944 -25.27694 -23.65308 -23.25413 -22.30671 -21.56423 -21.50346 -19.85697 -19.13411 -18.85257 -18.77615 -17.63854 -17.44144 -16.77452 -16.39950 -16.34952 -15.94308 -15.73126 -15.52551 -15.24189 -15.10051 -14.79889 -14.56388 -14.38348 -14.08044 -13.88736 -13.59951 -13.56488 -13.03893 -12.98516 -12.88470 -12.52906 -12.48928 -12.33506 -12.27718 -12.09583 -12.02647 -11.88991 -11.64994 -11.29449 -11.23167 -11.18041 -10.80528 -10.69824 -9.77622 -8.95210 -8.47653 -6.15759 0.26642 0.59895 0.61035 1.22159 1.24365 1.34876 1.43695 1.53567 1.55916 2.10559 2.17744 2.76601 2.88812 3.17484 3.34381 3.50701 3.65178 3.75242 3.96799 4.02900 4.09951 4.18257 4.27189 4.32041 4.41934 4.44266 4.57881 4.66986 4.67822 4.79250 4.98509 5.02100 5.05007 5.08704 5.12669 5.14539 5.27097 5.33874 5.43894 5.54805 5.70842 5.73638 6.02695 6.07787 6.20713 6.74499 6.89768 6.97042 7.77505 8.75801 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.025432 B = 0.001809 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.705845 B =15470.456714 C =15958.599915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 C 0.294 3.706 4 N -0.555 5.555 5 C 0.215 3.785 6 C 0.162 3.838 7 O -0.354 6.354 8 C 0.467 3.533 9 O -0.529 6.529 10 C -0.046 4.046 11 C -0.159 4.159 12 C -0.052 4.052 13 C -0.206 4.206 14 C 0.117 3.883 15 O -0.232 6.232 16 C -0.414 4.414 17 H 0.102 0.898 18 C -0.024 4.024 19 N -0.920 5.920 20 Si 1.020 2.980 21 H -0.251 1.251 22 H -0.266 1.266 23 H -0.270 1.270 24 C -0.244 4.244 25 C -0.054 4.054 26 N -0.315 5.315 27 N -0.464 5.464 28 H 0.459 0.541 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.150 0.850 39 H 0.114 0.886 40 H 0.273 0.727 41 H 0.120 0.880 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.061 -32.742 15.188 36.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.081 4.081 3 C 0.017 3.983 4 N -0.286 5.286 5 C -0.068 4.068 6 C 0.086 3.914 7 O -0.270 6.270 8 C 0.311 3.689 9 O -0.417 6.417 10 C -0.083 4.083 11 C -0.160 4.160 12 C -0.070 4.070 13 C -0.225 4.225 14 C 0.066 3.934 15 O -0.138 6.138 16 C -0.490 4.490 17 H 0.119 0.881 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.839 3.161 21 H -0.175 1.175 22 H -0.191 1.191 23 H -0.195 1.195 24 C -0.264 4.264 25 C -0.072 4.072 26 N -0.148 5.148 27 N -0.185 5.185 28 H 0.309 0.691 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.132 0.868 33 H 0.142 0.858 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.168 0.832 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.137 0.863 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.641 -31.672 14.889 35.096 hybrid contribution 0.301 0.352 -0.574 0.737 sum 2.942 -31.320 14.315 34.562 Atomic orbital electron populations 1.21692 0.92883 1.03654 1.02095 1.20487 0.97448 0.83240 1.06917 1.25261 0.89141 0.98494 0.85445 1.70290 1.28599 0.99853 1.29815 1.23527 0.94648 0.95100 0.93494 1.20794 0.90086 0.84444 0.96072 1.86503 1.50670 1.30578 1.59221 1.24417 0.84911 0.79450 0.80095 1.90734 1.49001 1.72881 1.29123 1.20235 0.96271 0.90137 1.01616 1.19155 1.03016 0.95180 0.98598 1.20909 0.96550 0.90902 0.98664 1.20443 1.04560 1.00676 0.96868 1.19972 0.94238 0.86747 0.92411 1.83938 1.67047 1.30243 1.32594 1.21878 1.28911 1.02988 0.95188 0.88086 1.26617 0.98513 0.93870 1.03145 1.70193 1.41811 1.04704 1.39147 0.84513 0.77379 0.79531 0.74668 1.17469 1.19091 1.19462 1.21235 1.06264 0.94791 1.04065 1.20971 0.96958 0.96244 0.93042 1.77942 1.25210 0.95706 1.15903 1.47985 1.36723 1.07773 1.26029 0.69083 0.93084 0.93178 0.89011 0.86783 0.85837 0.88205 0.88418 0.84037 0.84220 0.83229 0.86759 0.91826 0.86269 0.84023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.87 71.98 0.71 -0.13 16 2 C -0.04 -0.16 6.56 29.85 0.20 0.04 16 3 C 0.29 3.94 7.51 138.23 1.04 4.98 16 4 N -0.56 -11.92 11.16 -179.73 -2.01 -13.93 16 5 C 0.22 5.03 7.78 138.63 1.08 6.11 16 6 C 0.16 3.86 6.09 71.24 0.43 4.29 16 7 O -0.35 -8.79 10.20 -51.37 -0.52 -9.31 16 8 C 0.47 12.53 7.95 71.23 0.57 13.09 16 9 O -0.53 -18.56 15.78 21.97 0.35 -18.21 16 10 C -0.05 -0.99 5.94 29.10 0.17 -0.82 16 11 C -0.16 -5.02 4.38 -19.83 -0.09 -5.11 16 12 C -0.05 -1.81 9.69 22.25 0.22 -1.60 16 13 C -0.21 -9.15 9.99 22.39 0.22 -8.93 16 14 C 0.12 6.05 6.65 22.58 0.15 6.20 16 15 O -0.23 -14.40 9.76 -22.66 -0.22 -14.62 16 16 C -0.41 -24.78 9.49 67.92 0.64 -24.14 16 17 H 0.10 5.58 5.20 -2.91 -0.02 5.57 16 18 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 19 N -0.92 -57.69 13.67 21.61 0.30 -57.39 16 20 Si 1.02 43.97 29.55 68.60 2.03 46.00 16 21 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 24 C -0.24 -11.08 9.17 22.39 0.21 -10.88 16 25 C -0.05 -1.93 9.69 22.25 0.22 -1.72 16 26 N -0.32 -6.80 12.80 -51.34 -0.66 -7.45 16 27 N -0.46 -5.89 7.45 -50.70 -0.38 -6.27 16 28 H 0.46 1.87 8.96 -213.09 -1.91 -0.04 16 29 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.11 0.23 8.14 -2.39 -0.02 0.22 16 33 H 0.12 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H 0.10 2.35 8.13 -2.38 -0.02 2.33 16 35 H 0.10 2.24 8.13 -2.39 -0.02 2.22 16 36 H 0.14 2.18 8.08 -2.39 -0.02 2.16 16 37 H 0.14 2.22 8.08 -2.38 -0.02 2.20 16 38 H 0.15 4.00 8.06 -2.91 -0.02 3.97 16 39 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 40 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 41 H 0.12 5.48 5.64 -2.91 -0.02 5.47 16 42 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -86.56 373.37 4.28 -82.28 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -0.84 Total: 18.45 kcal Atomic # 6 Polarization: -25.77 SS G_CDS: 6.23 Total: -19.54 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -2.74 Total: -85.04 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -0.40 Total: -42.14 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -86.56 4.28 -82.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754816208.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.209 kcal (2) G-P(sol) polarization free energy of solvation -86.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds