Wall clock time and date at job start Tue Mar 31 2020 16:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29942 * 126.28791 * 2 1 4 4 O 1.21300 * 110.25231 * 179.69028 * 3 2 1 5 5 C 1.33645 * 109.81404 * 0.46560 * 4 3 2 6 6 C 1.50689 * 126.55524 * 179.80254 * 5 4 3 7 7 H 1.09004 * 109.47326 * 194.68813 * 6 5 4 8 8 C 1.53000 * 109.47056 * 74.68991 * 6 5 4 9 9 N 1.46498 * 109.47257 * 314.69002 * 6 5 4 10 10 C 1.34783 * 120.00022 * 204.99613 * 9 6 5 11 11 O 1.21282 * 120.00033 * 0.02562 * 10 9 6 12 12 C 1.50697 * 119.99917 * 179.97438 * 10 9 6 13 13 C 1.50698 * 109.47110 * 180.02562 * 12 10 9 14 14 C 1.38320 * 119.96576 * 269.72177 * 13 12 10 15 15 C 1.38279 * 120.14055 * 179.76258 * 14 13 12 16 16 C 1.38121 * 120.06625 * 0.51629 * 15 14 13 17 17 C 1.38860 * 119.93148 * 359.74429 * 16 15 14 18 18 O 1.35755 * 120.06973 * 179.97438 * 17 16 15 19 19 C 1.34832 * 116.99667 * 354.48523 * 18 17 16 20 20 H 1.07995 * 120.00554 * 5.06358 * 19 18 17 21 21 C 1.38660 * 119.99633 * 185.05749 * 19 18 17 22 22 N 1.31556 * 120.00062 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 119.99886 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47255 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47163 * 120.00189 * 23 21 19 26 26 H 1.48499 * 109.47150 * 240.00303 * 23 21 19 27 27 C 1.38085 * 119.96634 * 89.99950 * 13 12 10 28 28 N 1.31134 * 106.89157 * 359.54501 * 5 4 3 29 29 H 1.09006 * 109.46798 * 270.02106 * 1 2 3 30 30 H 1.08994 * 109.47392 * 30.02333 * 1 2 3 31 31 H 1.09003 * 109.47269 * 150.02548 * 1 2 3 32 32 H 1.09004 * 109.47127 * 60.00442 * 8 6 5 33 33 H 1.08999 * 109.47359 * 179.97438 * 8 6 5 34 34 H 1.08992 * 109.47297 * 299.99973 * 8 6 5 35 35 H 0.96997 * 119.99933 * 25.00133 * 9 6 5 36 36 H 1.08997 * 109.47091 * 60.00219 * 12 10 9 37 37 H 1.09003 * 109.47227 * 300.00670 * 12 10 9 38 38 H 1.08005 * 119.92876 * 0.02562 * 14 13 12 39 39 H 1.07997 * 119.97151 * 180.25535 * 15 14 13 40 40 H 1.08005 * 120.03714 * 179.71820 * 16 15 14 41 41 H 0.97001 * 120.00070 * 180.02562 * 22 21 19 42 42 H 1.07996 * 120.03129 * 359.95667 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4418 0.7123 0.0062 5 6 3.5299 -0.6212 0.0006 6 6 4.7969 -1.4369 0.0010 7 1 4.5652 -2.4683 -0.2648 8 6 5.4275 -1.3989 1.3945 9 7 5.7365 -0.8803 -0.9755 10 6 6.6835 -1.6671 -1.5238 11 8 6.7576 -2.8360 -1.2091 12 6 7.6496 -1.0946 -2.5288 13 6 8.5982 -2.1733 -2.9846 14 6 9.7884 -2.3770 -2.3100 15 6 10.6592 -3.3689 -2.7222 16 6 10.3475 -4.1527 -3.8160 17 6 9.1559 -3.9471 -4.4987 18 8 8.8470 -4.7154 -5.5744 19 6 9.7887 -5.5824 -5.9980 20 1 10.7046 -5.7010 -5.4381 21 6 9.5812 -6.3218 -7.1525 22 7 8.4653 -6.1778 -7.8342 23 14 10.8855 -7.5235 -7.7390 24 1 12.0373 -7.5003 -6.8019 25 1 10.3125 -8.8927 -7.7845 26 1 11.3435 -7.1332 -9.0966 27 6 8.2809 -2.9535 -4.0789 28 7 2.3030 -1.0841 0.0003 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 4.7285 -1.8131 2.1211 33 1 6.3438 -1.9893 1.3950 34 1 5.6593 -0.3676 1.6604 35 1 5.6771 0.0545 -1.2274 36 1 8.2147 -0.2841 -2.0686 37 1 7.0970 -0.7110 -3.3864 38 1 10.0362 -1.7627 -1.4569 39 1 11.5858 -3.5283 -2.1909 40 1 11.0301 -4.9243 -4.1403 41 1 8.3200 -6.6954 -8.6416 42 1 7.3532 -2.7914 -4.6074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760433082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:35 Heat of formation + Delta-G solvation = 30.069487 kcal Electronic energy + Delta-G solvation = -26775.121927 eV Core-core repulsion = 22724.595060 eV Total energy + Delta-G solvation = -4050.526866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.02073 -40.09196 -38.84557 -36.80113 -36.47621 -35.95951 -33.15151 -32.39575 -32.04699 -30.66220 -29.52569 -29.14504 -27.09043 -25.37115 -25.07167 -23.82094 -22.03906 -21.55335 -20.85747 -20.32660 -18.57278 -18.26755 -17.58116 -17.27342 -16.91534 -16.24841 -15.49025 -15.12174 -14.98289 -14.50254 -14.38883 -14.33434 -14.02601 -13.96122 -13.65232 -13.42893 -13.37490 -13.22015 -12.73459 -12.66404 -12.55725 -12.36185 -12.01422 -11.84219 -11.74711 -11.51729 -11.41538 -11.25672 -10.82804 -10.75240 -10.59204 -10.40382 -10.38111 -9.89360 -9.51060 -9.29884 -8.80531 -8.04446 -7.18418 -6.40631 -3.99525 0.66138 1.76554 2.09003 2.25331 2.41998 2.62852 2.75635 3.15255 3.16395 3.22067 3.36444 3.64138 4.00012 4.35616 4.52521 4.58185 4.77118 4.88526 4.94697 4.98185 5.05180 5.11863 5.13588 5.21059 5.26388 5.41805 5.47045 5.50243 5.58897 5.67250 5.75693 5.77919 5.95893 6.02265 6.20818 6.37040 6.68369 6.94706 7.11085 7.19656 7.28784 7.40417 7.47867 7.72783 7.85914 8.04581 8.11476 9.05302 9.76335 10.77742 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.018460 B = 0.002181 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.408628 B =12837.285323 C =13826.186720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.170 3.830 3 N -0.383 5.383 4 O 0.080 5.920 5 C 0.178 3.822 6 C 0.242 3.758 7 H 0.134 0.866 8 C -0.163 4.163 9 N -0.738 5.738 10 C 0.521 3.479 11 O -0.508 6.508 12 C -0.091 4.091 13 C -0.035 4.035 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.230 4.230 17 C 0.154 3.846 18 O -0.180 6.180 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.174 4.174 28 N -0.469 5.469 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.405 0.595 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.269 0.731 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.983 14.563 16.622 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 N -0.091 5.091 4 O 0.022 5.978 5 C -0.044 4.044 6 C 0.135 3.865 7 H 0.152 0.848 8 C -0.222 4.222 9 N -0.395 5.395 10 C 0.308 3.692 11 O -0.381 6.381 12 C -0.131 4.131 13 C -0.036 4.036 14 C -0.215 4.215 15 C -0.093 4.093 16 C -0.249 4.249 17 C 0.101 3.899 18 O -0.083 6.083 19 C -0.466 4.466 20 H 0.110 0.890 21 C -0.166 4.166 22 N -0.499 5.499 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.193 4.193 28 N -0.203 5.203 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.240 0.760 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.144 0.856 41 H 0.078 0.922 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.879 14.067 16.478 23.811 hybrid contribution 0.691 -0.190 -0.375 0.809 sum -9.188 13.877 16.103 23.158 Atomic orbital electron populations 1.20177 0.82643 1.04955 1.04435 1.25995 1.00771 0.83241 1.00272 1.74649 0.89279 1.23789 1.21353 1.85272 1.22550 1.24525 1.65485 1.28922 0.96988 0.82259 0.96185 1.19315 0.79527 0.96040 0.91599 0.84805 1.22252 1.02663 1.03722 0.93591 1.46112 1.33654 1.14511 1.45203 1.20863 0.80650 0.86384 0.81256 1.90790 1.70560 1.16226 1.60487 1.20582 0.95986 0.98411 0.98143 1.18625 0.94096 0.95780 0.95083 1.20346 0.96190 1.02638 1.02311 1.20680 0.98121 0.94805 0.95705 1.21186 0.99533 1.04535 0.99646 1.19280 0.92404 0.89952 0.88278 1.83980 1.40562 1.45178 1.38621 1.21367 0.98690 1.17764 1.08807 0.89049 1.25282 0.97804 0.98255 0.95266 1.70051 1.24002 1.39653 1.16240 0.85652 0.79535 0.79375 0.78883 1.19113 1.20191 1.20196 1.19953 1.00757 0.98363 1.00263 1.71925 0.99417 1.29428 1.19502 0.89169 0.89340 0.88773 0.90738 0.89351 0.91351 0.76014 0.87965 0.87983 0.87860 0.87468 0.85619 0.92150 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 36.01 0.38 -0.01 16 2 C 0.17 1.71 8.22 -156.37 -1.28 0.42 16 3 N -0.38 -4.12 12.16 30.90 0.38 -3.75 16 4 O 0.08 0.79 11.14 18.10 0.20 0.99 16 5 C 0.18 1.75 7.26 -13.06 -0.09 1.66 16 6 C 0.24 2.24 3.12 -69.09 -0.22 2.02 16 7 H 0.13 1.47 7.58 -51.93 -0.39 1.08 16 8 C -0.16 -1.23 9.47 37.16 0.35 -0.88 16 9 N -0.74 -6.72 5.07 -54.94 -0.28 -6.99 16 10 C 0.52 6.68 7.79 -10.98 -0.09 6.60 16 11 O -0.51 -8.88 15.70 5.56 0.09 -8.79 16 12 C -0.09 -1.10 5.83 -29.04 -0.17 -1.27 16 13 C -0.04 -0.62 4.37 -104.65 -0.46 -1.07 16 14 C -0.20 -3.39 9.70 -39.54 -0.38 -3.77 16 15 C -0.07 -1.40 10.04 -39.61 -0.40 -1.80 16 16 C -0.23 -5.12 9.17 -39.39 -0.36 -5.48 16 17 C 0.15 3.82 6.65 -39.11 -0.26 3.56 16 18 O -0.18 -5.23 9.76 0.03 0.00 -5.23 16 19 C -0.39 -11.08 9.49 30.89 0.29 -10.79 16 20 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 21 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 22 N -0.86 -25.71 13.67 55.48 0.76 -24.95 16 23 Si 0.94 20.82 29.55 -169.99 -5.02 15.80 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 26 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 27 C -0.17 -3.73 9.65 -39.39 -0.38 -4.11 16 28 N -0.47 -5.25 11.55 -9.87 -0.11 -5.36 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.41 2.61 8.45 -40.82 -0.35 2.26 16 36 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 37 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 38 H 0.10 1.47 8.06 -52.48 -0.42 1.05 16 39 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 40 H 0.13 2.80 5.64 -52.48 -0.30 2.50 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -35.61 371.02 -6.65 -42.26 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.09 Total: 4.41 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -3.16 Total: -13.97 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.74 Total: -41.06 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.29 Total: -13.04 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.61 -6.65 -42.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760433082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.329 kcal (2) G-P(sol) polarization free energy of solvation -35.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds