Wall clock time and date at job start Tue Mar 31 2020 16:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29942 * 126.28791 * 2 1 4 4 O 1.21300 * 110.25231 * 179.69028 * 3 2 1 5 5 C 1.33645 * 109.81404 * 0.46560 * 4 3 2 6 6 C 1.50689 * 126.55524 * 179.80254 * 5 4 3 7 7 H 1.09004 * 109.47326 * 194.68813 * 6 5 4 8 8 C 1.53000 * 109.47056 * 74.68991 * 6 5 4 9 9 N 1.46498 * 109.47257 * 314.69002 * 6 5 4 10 10 C 1.34783 * 120.00022 * 204.99613 * 9 6 5 11 11 O 1.21282 * 120.00033 * 0.02562 * 10 9 6 12 12 C 1.50697 * 119.99917 * 179.97438 * 10 9 6 13 13 C 1.50698 * 109.47110 * 180.02562 * 12 10 9 14 14 C 1.38320 * 119.96576 * 269.72177 * 13 12 10 15 15 C 1.38279 * 120.14055 * 179.76258 * 14 13 12 16 16 C 1.38121 * 120.06625 * 0.51629 * 15 14 13 17 17 C 1.38860 * 119.93148 * 359.74429 * 16 15 14 18 18 O 1.35755 * 120.06973 * 179.97438 * 17 16 15 19 19 C 1.34832 * 116.99667 * 354.48523 * 18 17 16 20 20 H 1.07995 * 120.00554 * 5.06358 * 19 18 17 21 21 C 1.38660 * 119.99633 * 185.05749 * 19 18 17 22 22 N 1.31556 * 120.00062 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 119.99886 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47255 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47163 * 120.00189 * 23 21 19 26 26 H 1.48499 * 109.47150 * 240.00303 * 23 21 19 27 27 C 1.38085 * 119.96634 * 89.99950 * 13 12 10 28 28 N 1.31134 * 106.89157 * 359.54501 * 5 4 3 29 29 H 1.09006 * 109.46798 * 270.02106 * 1 2 3 30 30 H 1.08994 * 109.47392 * 30.02333 * 1 2 3 31 31 H 1.09003 * 109.47269 * 150.02548 * 1 2 3 32 32 H 1.09004 * 109.47127 * 60.00442 * 8 6 5 33 33 H 1.08999 * 109.47359 * 179.97438 * 8 6 5 34 34 H 1.08992 * 109.47297 * 299.99973 * 8 6 5 35 35 H 0.96997 * 119.99933 * 25.00133 * 9 6 5 36 36 H 1.08997 * 109.47091 * 60.00219 * 12 10 9 37 37 H 1.09003 * 109.47227 * 300.00670 * 12 10 9 38 38 H 1.08005 * 119.92876 * 0.02562 * 14 13 12 39 39 H 1.07997 * 119.97151 * 180.25535 * 15 14 13 40 40 H 1.08005 * 120.03714 * 179.71820 * 16 15 14 41 41 H 0.97001 * 120.00070 * 180.02562 * 22 21 19 42 42 H 1.07996 * 120.03129 * 359.95667 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4418 0.7123 0.0062 5 6 3.5299 -0.6212 0.0006 6 6 4.7969 -1.4369 0.0010 7 1 4.5652 -2.4683 -0.2648 8 6 5.4275 -1.3989 1.3945 9 7 5.7365 -0.8803 -0.9755 10 6 6.6835 -1.6671 -1.5238 11 8 6.7576 -2.8360 -1.2091 12 6 7.6496 -1.0946 -2.5288 13 6 8.5982 -2.1733 -2.9846 14 6 9.7884 -2.3770 -2.3100 15 6 10.6592 -3.3689 -2.7222 16 6 10.3475 -4.1527 -3.8160 17 6 9.1559 -3.9471 -4.4987 18 8 8.8470 -4.7154 -5.5744 19 6 9.7887 -5.5824 -5.9980 20 1 10.7046 -5.7010 -5.4381 21 6 9.5812 -6.3218 -7.1525 22 7 8.4653 -6.1778 -7.8342 23 14 10.8855 -7.5235 -7.7390 24 1 12.0373 -7.5003 -6.8019 25 1 10.3125 -8.8927 -7.7845 26 1 11.3435 -7.1332 -9.0966 27 6 8.2809 -2.9535 -4.0789 28 7 2.3030 -1.0841 0.0003 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8897 -0.5142 31 1 -0.3634 -0.8902 -0.5134 32 1 4.7285 -1.8131 2.1211 33 1 6.3438 -1.9893 1.3950 34 1 5.6593 -0.3676 1.6604 35 1 5.6771 0.0545 -1.2274 36 1 8.2147 -0.2841 -2.0686 37 1 7.0970 -0.7110 -3.3864 38 1 10.0362 -1.7627 -1.4569 39 1 11.5858 -3.5283 -2.1909 40 1 11.0301 -4.9243 -4.1403 41 1 8.3200 -6.6954 -8.6416 42 1 7.3532 -2.7914 -4.6074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760433082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:34 Heat of formation + Delta-G solvation = 3.404515 kcal Electronic energy + Delta-G solvation = -26776.278207 eV Core-core repulsion = 22724.595060 eV Total energy + Delta-G solvation = -4051.683146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.79523 -41.23122 -40.47178 -38.30091 -37.37814 -36.94370 -34.33815 -34.02077 -33.38120 -31.57048 -30.78335 -30.12551 -28.38836 -27.23659 -26.00442 -24.58070 -23.34288 -23.01522 -22.02480 -21.41134 -19.58277 -19.34491 -19.04551 -18.62499 -18.18236 -17.18189 -16.77566 -16.59843 -16.07928 -15.95854 -15.89977 -15.46289 -15.22119 -14.95939 -14.74648 -14.53128 -14.39155 -14.22661 -13.97090 -13.91644 -13.57815 -13.33883 -13.23042 -12.96669 -12.81278 -12.62832 -12.49802 -12.45800 -12.34629 -12.20378 -12.18304 -12.06767 -11.18571 -11.16403 -10.97666 -10.79138 -10.39502 -9.60776 -8.94430 -8.46049 -6.14212 -0.11144 0.54462 0.79595 1.01607 1.34666 1.43169 1.44379 1.53402 1.65787 1.87744 2.18466 2.65007 2.86803 2.94454 3.20039 3.47147 3.64666 3.80884 3.88224 4.02632 4.14497 4.16637 4.35925 4.36863 4.48029 4.54532 4.57163 4.60420 4.63659 4.70494 4.76490 4.78102 4.81241 5.03966 5.10279 5.14678 5.15649 5.20977 5.34664 5.68793 5.76388 5.79106 6.04842 6.26305 6.40942 6.96916 6.98920 7.17913 7.81487 8.77870 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.018460 B = 0.002181 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.408628 B =12837.285323 C =13826.186720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.164 3.836 3 N -0.399 5.399 4 O 0.085 5.915 5 C 0.184 3.816 6 C 0.245 3.755 7 H 0.114 0.886 8 C -0.156 4.156 9 N -0.718 5.718 10 C 0.527 3.473 11 O -0.562 6.562 12 C -0.090 4.090 13 C -0.026 4.026 14 C -0.176 4.176 15 C -0.075 4.075 16 C -0.247 4.247 17 C 0.109 3.891 18 O -0.236 6.236 19 C -0.411 4.411 20 H 0.101 0.899 21 C -0.026 4.026 22 N -0.923 5.923 23 Si 1.020 2.980 24 H -0.251 1.251 25 H -0.269 1.269 26 H -0.267 1.267 27 C -0.193 4.193 28 N -0.495 5.495 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.422 0.578 36 H 0.152 0.848 37 H 0.122 0.878 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.115 0.885 41 H 0.272 0.728 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.987 16.891 19.160 26.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.109 4.109 3 N -0.108 5.108 4 O 0.028 5.972 5 C -0.037 4.037 6 C 0.138 3.862 7 H 0.132 0.868 8 C -0.215 4.215 9 N -0.375 5.375 10 C 0.315 3.685 11 O -0.439 6.439 12 C -0.129 4.129 13 C -0.027 4.027 14 C -0.195 4.195 15 C -0.093 4.093 16 C -0.266 4.266 17 C 0.060 3.940 18 O -0.143 6.143 19 C -0.488 4.488 20 H 0.118 0.882 21 C -0.223 4.223 22 N -0.562 5.562 23 Si 0.839 3.161 24 H -0.175 1.175 25 H -0.195 1.195 26 H -0.192 1.192 27 C -0.212 4.212 28 N -0.229 5.229 29 H 0.125 0.875 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.260 0.740 36 H 0.170 0.830 37 H 0.140 0.860 38 H 0.170 0.830 39 H 0.163 0.837 40 H 0.133 0.867 41 H 0.081 0.919 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.887 16.484 19.070 26.728 hybrid contribution 0.309 -0.646 -0.879 1.134 sum -8.578 15.838 18.192 25.600 Atomic orbital electron populations 1.20386 0.80301 1.05820 1.05793 1.26668 1.02236 0.82632 0.99314 1.74634 0.89609 1.24219 1.22311 1.85251 1.22349 1.24207 1.65429 1.28915 0.96817 0.82365 0.95641 1.19280 0.79467 0.94877 0.92588 0.86847 1.22203 1.02140 1.04812 0.92330 1.45855 1.32330 1.14971 1.44297 1.20899 0.81002 0.85692 0.80942 1.90792 1.72210 1.18468 1.62442 1.20711 0.95583 0.97550 0.99067 1.19174 0.95168 0.95490 0.92844 1.21008 0.94830 1.01351 1.02262 1.21146 0.99819 0.94003 0.94284 1.21299 0.98747 1.05436 1.01104 1.19906 0.94588 0.91213 0.88340 1.83938 1.41942 1.47237 1.41194 1.21859 0.99190 1.18218 1.09502 0.88211 1.26613 1.00412 1.00215 0.95055 1.70198 1.26747 1.41895 1.17345 0.84514 0.76567 0.76373 0.78636 1.17455 1.19451 1.19158 1.20245 1.00236 0.98779 1.01973 1.71946 1.00195 1.30327 1.20446 0.87469 0.88103 0.88236 0.90062 0.90249 0.89459 0.74039 0.83033 0.86008 0.83002 0.83732 0.86681 0.91912 0.87680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.51 71.24 0.75 0.07 16 2 C 0.16 3.07 8.22 138.46 1.14 4.21 16 3 N -0.40 -7.95 12.16 -60.32 -0.73 -8.68 16 4 O 0.09 1.50 11.14 74.82 0.83 2.34 16 5 C 0.18 3.35 7.26 88.38 0.64 3.99 16 6 C 0.25 4.16 3.12 44.24 0.14 4.30 16 7 H 0.11 2.49 7.58 -2.38 -0.02 2.47 16 8 C -0.16 -2.01 9.47 71.98 0.68 -1.33 16 9 N -0.72 -11.15 5.07 -446.11 -2.26 -13.41 16 10 C 0.53 12.18 7.79 87.66 0.68 12.86 16 11 O -0.56 -19.11 15.70 -3.04 -0.05 -19.16 16 12 C -0.09 -1.82 5.83 29.10 0.17 -1.65 16 13 C -0.03 -0.86 4.37 -19.88 -0.09 -0.94 16 14 C -0.18 -5.38 9.70 22.30 0.22 -5.17 16 15 C -0.07 -2.62 10.04 22.25 0.22 -2.39 16 16 C -0.25 -11.20 9.17 22.39 0.21 -10.99 16 17 C 0.11 5.69 6.65 22.58 0.15 5.84 16 18 O -0.24 -14.79 9.76 -22.81 -0.22 -15.01 16 19 C -0.41 -24.81 9.49 67.92 0.64 -24.16 16 20 H 0.10 5.55 5.20 -2.91 -0.02 5.53 16 21 C -0.03 -1.53 5.49 84.84 0.47 -1.06 16 22 N -0.92 -58.22 13.67 21.61 0.30 -57.92 16 23 Si 1.02 44.10 29.55 68.60 2.03 46.13 16 24 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 27 C -0.19 -8.49 9.65 22.39 0.22 -8.27 16 28 N -0.49 -10.61 11.55 -303.21 -3.50 -14.11 16 29 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.95 8.14 -2.38 -0.02 0.94 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 35 H 0.42 3.90 8.45 -92.71 -0.78 3.11 16 36 H 0.15 1.65 8.08 -2.39 -0.02 1.64 16 37 H 0.12 2.08 8.08 -2.39 -0.02 2.06 16 38 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 39 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 40 H 0.12 5.33 5.64 -2.91 -0.02 5.31 16 41 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -85.39 371.02 2.91 -82.48 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.29 Total: 22.06 kcal Atomic # 6 Polarization: -30.93 SS G_CDS: 6.23 Total: -24.70 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -6.20 Total: -94.13 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: 0.56 Total: -31.83 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -85.39 2.91 -82.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760433082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.885 kcal (2) G-P(sol) polarization free energy of solvation -85.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds