Wall clock time and date at job start Tue Mar 31 2020 16:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47471 * 2 1 4 4 N 1.46495 * 109.47046 * 180.02562 * 3 2 1 5 5 C 1.34784 * 126.58208 * 125.00165 * 4 3 2 6 6 C 1.36669 * 106.83498 * 180.23572 * 5 4 3 7 7 C 1.47386 * 125.78470 * 179.73445 * 6 5 4 8 8 O 1.21513 * 119.99650 * 0.02562 * 7 6 5 9 9 O 1.34749 * 119.99970 * 180.02562 * 7 6 5 10 10 C 1.45201 * 116.99680 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47089 * 179.97438 * 10 9 7 12 12 C 1.38308 * 119.93108 * 269.72916 * 11 10 9 13 13 C 1.38096 * 120.07044 * 179.72762 * 12 11 10 14 14 C 1.38884 * 119.92734 * 0.56094 * 13 12 11 15 15 O 1.35756 * 120.06871 * 179.68296 * 14 13 12 16 16 C 1.34830 * 116.99789 * 174.48942 * 15 14 13 17 17 H 1.07994 * 120.00107 * 5.06438 * 16 15 14 18 18 C 1.38658 * 119.99561 * 185.05641 * 16 15 14 19 19 N 1.31550 * 120.00101 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99635 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47056 * 60.00436 * 20 18 16 22 22 H 1.48498 * 109.46667 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47348 * 300.00418 * 20 18 16 24 24 C 1.38880 * 119.86282 * 359.71374 * 14 13 12 25 25 C 1.38096 * 119.92935 * 359.97438 * 24 14 13 26 26 N 1.34445 * 108.43298 * 359.60850 * 6 5 4 27 27 N 1.28751 * 109.51567 * 0.40141 * 26 6 5 28 28 H 1.09009 * 109.46725 * 300.00230 * 1 2 3 29 29 H 1.08998 * 109.47206 * 59.99840 * 1 2 3 30 30 H 1.09001 * 109.47510 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46891 * 240.00008 * 2 1 3 32 32 H 1.08998 * 109.47206 * 120.00160 * 2 1 3 33 33 H 1.08997 * 109.47348 * 59.99675 * 3 2 1 34 34 H 1.08999 * 109.46586 * 299.99980 * 3 2 1 35 35 H 1.08001 * 126.58640 * 359.97296 * 5 4 3 36 36 H 1.08999 * 109.47290 * 300.00359 * 10 9 7 37 37 H 1.09001 * 109.46976 * 59.99726 * 10 9 7 38 38 H 1.08004 * 119.96459 * 359.97430 * 12 11 10 39 39 H 1.07997 * 120.03764 * 180.27741 * 13 12 11 40 40 H 0.96997 * 119.99706 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.03320 * 179.97438 * 24 14 13 42 42 H 1.07999 * 119.96421 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3080 2.0633 -0.8874 6 6 5.5944 1.7938 -0.5129 7 6 6.8092 2.2662 -1.2009 8 8 6.7141 2.9601 -2.1938 9 8 8.0253 1.9285 -0.7288 10 6 9.1774 2.4288 -1.4573 11 6 10.4407 1.9534 -0.7871 12 6 11.0287 2.7217 0.2013 13 6 12.1832 2.2861 0.8213 14 6 12.7603 1.0808 0.4432 15 8 13.8989 0.6530 1.0463 16 6 14.3429 -0.5760 0.7140 17 1 13.8449 -1.1386 -0.0617 18 6 15.4391 -1.1173 1.3682 19 7 16.0454 -0.4320 2.3134 20 14 16.0547 -2.8197 0.9074 21 1 16.4490 -2.8327 -0.5242 22 1 17.2291 -3.1655 1.7479 23 1 14.9752 -3.8143 1.1326 24 6 12.1706 0.3143 -0.5536 25 6 11.0126 0.7523 -1.1652 26 7 5.5640 1.0272 0.5912 27 7 4.3411 0.7965 0.9211 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9562 -0.8900 35 1 3.9949 2.6560 -1.7342 36 1 9.1480 2.0588 -2.4821 37 1 9.1579 3.5186 -1.4638 38 1 10.5822 3.6614 0.4914 39 1 12.6394 2.8843 1.5961 40 1 16.8120 -0.8109 2.7713 41 1 12.6173 -0.6232 -0.8501 42 1 10.5533 0.1565 -1.9401 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767040728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:48 Heat of formation + Delta-G solvation = 6.601561 kcal Electronic energy + Delta-G solvation = -26027.286562 eV Core-core repulsion = 21975.742050 eV Total energy + Delta-G solvation = -4051.544512 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.54717 -40.11726 -38.99537 -36.96099 -36.50230 -35.96455 -33.12905 -32.39519 -31.44185 -30.41124 -30.16078 -27.69095 -26.14544 -25.08084 -23.89822 -23.23155 -22.01643 -21.99853 -20.84529 -20.51625 -18.44281 -18.02084 -17.19811 -16.94962 -16.71044 -16.45571 -15.99363 -15.45620 -15.13108 -14.68042 -14.59698 -14.38733 -14.13296 -13.66923 -13.64125 -13.33240 -13.15416 -12.80565 -12.72324 -12.69899 -12.43485 -12.21193 -12.10930 -11.69027 -11.64320 -11.40426 -11.33433 -11.03438 -10.77590 -10.72458 -10.72309 -10.56648 -10.47805 -10.39691 -9.66391 -9.36070 -8.85662 -8.19977 -7.27604 -6.47457 -4.05941 0.72465 1.35428 1.56696 2.00790 2.22435 2.89402 2.89968 3.13375 3.15861 3.17457 3.76374 3.91221 3.95741 4.08643 4.34353 4.42948 4.50745 4.59119 4.68768 4.76550 4.90735 5.03837 5.08000 5.20785 5.24685 5.29585 5.32457 5.34452 5.45073 5.55518 5.68033 5.71388 5.82926 5.94028 6.19000 6.39399 6.44265 6.65809 6.87176 7.02374 7.20828 7.33087 7.41202 7.54628 7.77877 7.83624 7.97424 8.97739 9.66077 10.69998 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.001920 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.429796 B =14580.000171 C =15479.307139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.120 3.880 4 N -0.362 5.362 5 C 0.099 3.901 6 C -0.085 4.085 7 C 0.553 3.447 8 O -0.514 6.514 9 O -0.329 6.329 10 C 0.130 3.870 11 C -0.204 4.204 12 C -0.047 4.047 13 C -0.196 4.196 14 C 0.164 3.836 15 O -0.172 6.172 16 C -0.393 4.393 17 H 0.093 0.907 18 C 0.040 3.960 19 N -0.859 5.859 20 Si 0.942 3.058 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.238 4.238 25 C -0.043 4.043 26 N -0.175 5.175 27 N -0.060 5.060 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.208 0.792 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.271 0.729 41 H 0.130 0.870 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.193 4.201 -7.501 30.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.178 4.178 3 C -0.001 4.001 4 N -0.146 5.146 5 C -0.058 4.058 6 C -0.222 4.222 7 C 0.396 3.604 8 O -0.403 6.403 9 O -0.244 6.244 10 C 0.057 3.943 11 C -0.205 4.205 12 C -0.065 4.065 13 C -0.215 4.215 14 C 0.109 3.891 15 O -0.075 6.075 16 C -0.469 4.469 17 H 0.111 0.889 18 C -0.164 4.164 19 N -0.494 5.494 20 Si 0.766 3.234 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.257 4.257 25 C -0.061 4.061 26 N -0.050 5.050 27 N -0.041 5.041 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.224 0.776 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.081 0.919 41 H 0.147 0.853 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -28.774 3.612 -6.211 29.658 hybrid contribution 0.137 -0.197 -1.228 1.251 sum -28.638 3.415 -7.439 29.784 Atomic orbital electron populations 1.21705 0.93736 1.02994 1.02346 1.21847 0.97042 0.94431 1.04449 1.22207 0.72234 1.00305 1.05312 1.50660 1.09033 1.34885 1.20012 1.23334 0.89810 0.96804 0.95900 1.20422 0.92213 1.09777 0.99830 1.19436 0.83153 0.76725 0.81103 1.90851 1.87793 1.36498 1.25136 1.86818 1.13724 1.69005 1.54881 1.21795 0.80042 0.98342 0.94104 1.18838 0.97306 0.99208 1.05148 1.20511 0.94219 0.98103 0.93693 1.20189 0.98808 0.97472 1.05027 1.19443 0.86262 0.92715 0.90689 1.83978 1.32242 1.33019 1.58228 1.21324 1.13709 0.90896 1.20992 0.88926 1.25315 0.95836 0.99837 0.95454 1.70027 1.20097 1.37465 1.21775 0.85762 0.78586 0.80286 0.78717 1.19448 1.20236 1.19400 1.21134 0.99576 1.03150 1.01858 1.20615 0.94327 0.93799 0.97388 1.74885 1.12157 1.08674 1.09235 1.82092 0.93307 1.17061 1.11662 0.92029 0.92221 0.91538 0.90936 0.89838 0.88096 0.87594 0.77552 0.90975 0.90933 0.86850 0.86205 0.91861 0.85278 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.32 9.91 37.16 0.37 0.05 16 2 C -0.14 -0.53 6.14 -26.73 -0.16 -0.70 16 3 C 0.12 0.42 6.54 -4.04 -0.03 0.39 16 4 N -0.36 -2.90 3.69 -61.05 -0.23 -3.13 16 5 C 0.10 0.83 11.27 -16.82 -0.19 0.64 16 6 C -0.09 -1.09 7.02 -83.57 -0.59 -1.68 16 7 C 0.55 8.07 7.96 34.45 0.27 8.34 16 8 O -0.51 -7.70 16.65 -19.28 -0.32 -8.02 16 9 O -0.33 -5.43 10.21 -40.62 -0.41 -5.84 16 10 C 0.13 2.00 5.60 36.01 0.20 2.20 16 11 C -0.20 -3.69 5.52 -104.57 -0.58 -4.27 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 13 C -0.20 -4.20 9.99 -39.39 -0.39 -4.60 16 14 C 0.16 4.00 6.65 -39.10 -0.26 3.74 16 15 O -0.17 -4.93 9.76 0.03 0.00 -4.93 16 16 C -0.39 -11.00 9.49 30.89 0.29 -10.71 16 17 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 18 C 0.04 1.11 5.49 -17.52 -0.10 1.02 16 19 N -0.86 -25.16 13.67 55.48 0.76 -24.40 16 20 Si 0.94 20.53 29.55 -169.99 -5.02 15.51 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 24 C -0.24 -5.25 9.17 -39.40 -0.36 -5.61 16 25 C -0.04 -0.82 9.69 -39.61 -0.38 -1.20 16 26 N -0.18 -2.57 12.39 32.83 0.41 -2.16 16 27 N -0.06 -0.74 13.64 60.35 0.82 0.09 16 28 H 0.06 0.11 8.14 -51.92 -0.42 -0.32 16 29 H 0.06 0.08 8.14 -51.93 -0.42 -0.35 16 30 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.11 0.06 8.08 -51.93 -0.42 -0.36 16 35 H 0.21 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 37 H 0.07 1.01 8.08 -51.93 -0.42 0.60 16 38 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 39 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.13 2.82 5.64 -52.49 -0.30 2.52 16 42 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -34.64 375.50 -5.81 -40.45 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.19 Total: 0.42 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -2.29 Total: -13.64 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 1.76 Total: -29.61 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.74 Total: -18.79 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.64 -5.81 -40.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767040728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.051 kcal (2) G-P(sol) polarization free energy of solvation -34.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds