Wall clock time and date at job start Tue Mar 31 2020 16:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47471 * 2 1 4 4 N 1.46495 * 109.47046 * 180.02562 * 3 2 1 5 5 C 1.34784 * 126.58208 * 125.00165 * 4 3 2 6 6 C 1.36669 * 106.83498 * 180.23572 * 5 4 3 7 7 C 1.47386 * 125.78470 * 179.73445 * 6 5 4 8 8 O 1.21513 * 119.99650 * 0.02562 * 7 6 5 9 9 O 1.34749 * 119.99970 * 180.02562 * 7 6 5 10 10 C 1.45201 * 116.99680 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.47089 * 179.97438 * 10 9 7 12 12 C 1.38308 * 119.93108 * 269.72916 * 11 10 9 13 13 C 1.38096 * 120.07044 * 179.72762 * 12 11 10 14 14 C 1.38884 * 119.92734 * 0.56094 * 13 12 11 15 15 O 1.35756 * 120.06871 * 179.68296 * 14 13 12 16 16 C 1.34830 * 116.99789 * 174.48942 * 15 14 13 17 17 H 1.07994 * 120.00107 * 5.06438 * 16 15 14 18 18 C 1.38658 * 119.99561 * 185.05641 * 16 15 14 19 19 N 1.31550 * 120.00101 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99635 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47056 * 60.00436 * 20 18 16 22 22 H 1.48498 * 109.46667 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47348 * 300.00418 * 20 18 16 24 24 C 1.38880 * 119.86282 * 359.71374 * 14 13 12 25 25 C 1.38096 * 119.92935 * 359.97438 * 24 14 13 26 26 N 1.34445 * 108.43298 * 359.60850 * 6 5 4 27 27 N 1.28751 * 109.51567 * 0.40141 * 26 6 5 28 28 H 1.09009 * 109.46725 * 300.00230 * 1 2 3 29 29 H 1.08998 * 109.47206 * 59.99840 * 1 2 3 30 30 H 1.09001 * 109.47510 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46891 * 240.00008 * 2 1 3 32 32 H 1.08998 * 109.47206 * 120.00160 * 2 1 3 33 33 H 1.08997 * 109.47348 * 59.99675 * 3 2 1 34 34 H 1.08999 * 109.46586 * 299.99980 * 3 2 1 35 35 H 1.08001 * 126.58640 * 359.97296 * 5 4 3 36 36 H 1.08999 * 109.47290 * 300.00359 * 10 9 7 37 37 H 1.09001 * 109.46976 * 59.99726 * 10 9 7 38 38 H 1.08004 * 119.96459 * 359.97430 * 12 11 10 39 39 H 1.07997 * 120.03764 * 180.27741 * 13 12 11 40 40 H 0.96997 * 119.99706 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.03320 * 179.97438 * 24 14 13 42 42 H 1.07999 * 119.96421 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.3080 2.0633 -0.8874 6 6 5.5944 1.7938 -0.5129 7 6 6.8092 2.2662 -1.2009 8 8 6.7141 2.9601 -2.1938 9 8 8.0253 1.9285 -0.7288 10 6 9.1774 2.4288 -1.4573 11 6 10.4407 1.9534 -0.7871 12 6 11.0287 2.7217 0.2013 13 6 12.1832 2.2861 0.8213 14 6 12.7603 1.0808 0.4432 15 8 13.8989 0.6530 1.0463 16 6 14.3429 -0.5760 0.7140 17 1 13.8449 -1.1386 -0.0617 18 6 15.4391 -1.1173 1.3682 19 7 16.0454 -0.4320 2.3134 20 14 16.0547 -2.8197 0.9074 21 1 16.4490 -2.8327 -0.5242 22 1 17.2291 -3.1655 1.7479 23 1 14.9752 -3.8143 1.1326 24 6 12.1706 0.3143 -0.5536 25 6 11.0126 0.7523 -1.1652 26 7 5.5640 1.0272 0.5912 27 7 4.3411 0.7965 0.9211 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9562 -0.8900 35 1 3.9949 2.6560 -1.7342 36 1 9.1480 2.0588 -2.4821 37 1 9.1579 3.5186 -1.4638 38 1 10.5822 3.6614 0.4914 39 1 12.6394 2.8843 1.5961 40 1 16.8120 -0.8109 2.7713 41 1 12.6173 -0.6232 -0.8501 42 1 10.5533 0.1565 -1.9401 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767040728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:47 Heat of formation + Delta-G solvation = -15.531906 kcal Electronic energy + Delta-G solvation = -26028.246341 eV Core-core repulsion = 21975.742050 eV Total energy + Delta-G solvation = -4052.504291 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.33976 -41.30925 -40.71064 -38.55194 -37.31569 -36.96761 -34.36984 -33.66218 -32.46349 -31.89536 -31.71316 -28.23233 -27.74684 -26.68506 -24.96438 -23.78916 -23.68809 -22.60485 -22.20750 -21.62896 -19.90114 -19.27156 -18.91802 -18.11420 -17.66409 -17.29757 -16.90011 -16.38567 -16.30716 -15.98758 -15.83614 -15.79858 -15.56236 -15.17841 -14.68204 -14.46088 -14.31013 -14.16859 -13.79548 -13.62373 -13.48938 -13.21280 -13.03208 -12.96843 -12.62190 -12.51918 -12.44363 -12.27369 -12.21093 -12.14967 -11.79573 -11.74669 -11.67548 -11.33759 -11.20710 -10.81111 -10.48018 -9.83532 -9.06234 -8.48693 -6.17269 0.01296 0.38217 0.41372 0.56229 1.03690 1.35357 1.45162 1.51675 1.76067 1.90721 2.17328 2.80042 3.08159 3.17932 3.37733 3.46124 3.74568 3.81190 3.82959 3.89406 3.93421 4.13898 4.14168 4.21297 4.31104 4.34768 4.47187 4.52840 4.55176 4.67718 4.74228 4.80622 4.99271 5.11966 5.12401 5.18109 5.22687 5.29659 5.30944 5.46821 5.50719 5.65782 5.69197 6.00100 6.12477 6.53740 6.90296 6.95432 7.73382 8.73788 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.017997 B = 0.001920 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.429796 B =14580.000171 C =15479.307139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.110 3.890 4 N -0.347 5.347 5 C 0.130 3.870 6 C -0.118 4.118 7 C 0.558 3.442 8 O -0.520 6.520 9 O -0.350 6.350 10 C 0.130 3.870 11 C -0.183 4.183 12 C -0.041 4.041 13 C -0.206 4.206 14 C 0.126 3.874 15 O -0.226 6.226 16 C -0.417 4.417 17 H 0.104 0.896 18 C -0.021 4.021 19 N -0.917 5.917 20 Si 1.019 2.981 21 H -0.256 1.256 22 H -0.271 1.271 23 H -0.259 1.259 24 C -0.246 4.246 25 C -0.043 4.043 26 N -0.219 5.219 27 N -0.087 5.087 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.116 0.884 34 H 0.148 0.852 35 H 0.253 0.747 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.150 0.850 39 H 0.120 0.880 40 H 0.274 0.726 41 H 0.125 0.875 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.118 4.904 -9.995 34.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C -0.008 4.008 4 N -0.130 5.130 5 C -0.029 4.029 6 C -0.256 4.256 7 C 0.401 3.599 8 O -0.409 6.409 9 O -0.266 6.266 10 C 0.058 3.942 11 C -0.184 4.184 12 C -0.059 4.059 13 C -0.226 4.226 14 C 0.074 3.926 15 O -0.132 6.132 16 C -0.493 4.493 17 H 0.121 0.879 18 C -0.219 4.219 19 N -0.555 5.555 20 Si 0.838 3.162 21 H -0.180 1.180 22 H -0.195 1.195 23 H -0.183 1.183 24 C -0.265 4.265 25 C -0.061 4.061 26 N -0.093 5.093 27 N -0.068 5.068 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.134 0.866 34 H 0.166 0.834 35 H 0.269 0.731 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.168 0.832 39 H 0.138 0.862 40 H 0.083 0.917 41 H 0.142 0.858 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -32.783 4.329 -8.718 34.197 hybrid contribution 0.888 -0.201 -0.588 1.084 sum -31.895 4.127 -9.307 33.480 Atomic orbital electron populations 1.21677 0.92186 1.03034 1.03418 1.21799 0.98265 0.94516 1.02959 1.22738 0.69446 1.00515 1.08141 1.50996 1.10391 1.33081 1.18570 1.23953 0.88060 0.95073 0.95792 1.20532 0.93083 1.11507 1.00496 1.19594 0.82851 0.76405 0.81029 1.90840 1.87752 1.36897 1.25370 1.86767 1.14662 1.69641 1.55501 1.21802 0.78618 0.99532 0.94283 1.19278 0.97869 0.97949 1.03307 1.20923 0.92740 0.99378 0.92858 1.20451 0.99805 0.96771 1.05538 1.19996 0.86413 0.94279 0.91878 1.83948 1.34737 1.33872 1.60656 1.21824 1.14414 0.91374 1.21703 0.87920 1.26612 0.95711 1.04380 0.95183 1.70173 1.21363 1.39952 1.23994 0.84645 0.78141 0.74427 0.78996 1.17973 1.19530 1.18307 1.21251 1.00602 1.02954 1.01739 1.20976 0.93072 0.94465 0.97577 1.74855 1.13587 1.10160 1.10689 1.81999 0.93267 1.18319 1.13190 0.91455 0.90609 0.92104 0.91680 0.92189 0.86646 0.83379 0.73114 0.89180 0.88915 0.83199 0.86234 0.91730 0.85777 0.84050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.25 9.91 71.98 0.71 0.47 16 2 C -0.14 -0.76 6.14 30.59 0.19 -0.58 16 3 C 0.11 0.36 6.54 86.38 0.56 0.92 16 4 N -0.35 -4.58 3.69 -347.07 -1.28 -5.86 16 5 C 0.13 1.70 11.27 83.87 0.95 2.65 16 6 C -0.12 -2.79 7.02 40.79 0.29 -2.50 16 7 C 0.56 14.88 7.96 70.23 0.56 15.44 16 8 O -0.52 -13.82 16.65 19.79 0.33 -13.49 16 9 O -0.35 -10.72 10.21 -56.59 -0.58 -11.30 16 10 C 0.13 3.56 5.60 71.24 0.40 3.96 16 11 C -0.18 -6.20 5.52 -19.83 -0.11 -6.30 16 12 C -0.04 -1.45 9.69 22.25 0.22 -1.24 16 13 C -0.21 -9.04 9.99 22.39 0.22 -8.82 16 14 C 0.13 6.40 6.65 22.58 0.15 6.55 16 15 O -0.23 -13.81 9.76 -22.80 -0.22 -14.04 16 16 C -0.42 -24.59 9.49 67.92 0.64 -23.95 16 17 H 0.10 5.54 5.20 -2.91 -0.02 5.52 16 18 C -0.02 -1.20 5.49 84.84 0.47 -0.73 16 19 N -0.92 -56.71 13.67 21.61 0.30 -56.41 16 20 Si 1.02 43.28 29.55 68.60 2.03 45.31 16 21 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 23 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 24 C -0.25 -11.04 9.17 22.39 0.21 -10.83 16 25 C -0.04 -1.56 9.69 22.25 0.22 -1.35 16 26 N -0.22 -6.30 12.39 -50.03 -0.62 -6.92 16 27 N -0.09 -2.05 13.64 37.02 0.51 -1.55 16 28 H 0.07 0.06 8.14 -2.38 -0.02 0.04 16 29 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.15 -0.68 8.08 -2.39 -0.02 -0.69 16 35 H 0.25 0.78 8.06 -2.91 -0.02 0.76 16 36 H 0.09 2.19 8.08 -2.39 -0.02 2.17 16 37 H 0.09 2.21 8.08 -2.39 -0.02 2.19 16 38 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 39 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 40 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.12 5.58 5.64 -2.91 -0.02 5.56 16 42 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -82.22 375.50 7.17 -75.05 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 1.05 Total: 15.52 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 5.67 Total: -26.31 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -1.10 Total: -70.74 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -0.47 Total: -38.82 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -82.22 7.17 -75.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767040728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.520 kcal (2) G-P(sol) polarization free energy of solvation -82.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds