Wall clock time and date at job start Tue Mar 31 2020 16:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47326 * 2 1 4 4 C 1.47196 * 109.47100 * 239.99563 * 2 1 3 5 5 N 2.60800 * 109.47359 * 239.99623 * 2 1 3 6 6 C 1.53009 * 109.46559 * 119.99773 * 2 1 3 7 7 N 1.46497 * 109.47313 * 299.99899 * 6 2 1 8 8 C 1.34769 * 120.00179 * 180.02562 * 7 6 2 9 9 O 1.21363 * 119.99741 * 0.02562 * 8 7 6 10 10 C 1.49356 * 120.00317 * 179.97438 * 8 7 6 11 11 O 1.21369 * 119.99579 * 0.02562 * 10 8 7 12 12 N 1.34768 * 119.99903 * 179.97438 * 10 8 7 13 13 C 1.39726 * 119.99772 * 174.78665 * 12 10 8 14 14 C 1.39026 * 120.04281 * 326.28675 * 13 12 10 15 15 C 1.38135 * 120.06033 * 180.02562 * 14 13 12 16 16 C 1.38182 * 120.14727 * 359.71300 * 15 14 13 17 17 C 1.38914 * 120.08070 * 0.56403 * 16 15 14 18 18 O 1.35759 * 120.03335 * 179.71476 * 17 16 15 19 19 C 1.34830 * 116.99906 * 173.81952 * 18 17 16 20 20 H 1.07996 * 120.00265 * 354.59877 * 19 18 17 21 21 C 1.38655 * 119.99479 * 174.60137 * 19 18 17 22 22 N 1.31550 * 120.00217 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99636 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47399 * 60.00022 * 23 21 19 25 25 H 1.48505 * 109.46878 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47178 * 299.99666 * 23 21 19 27 27 C 1.38762 * 119.93859 * 359.43847 * 17 16 15 28 28 H 1.08998 * 109.47295 * 300.00492 * 1 2 3 29 29 H 1.09002 * 109.46815 * 60.00124 * 1 2 3 30 30 H 1.09003 * 109.47510 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47193 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46687 * 300.00085 * 3 2 1 33 33 H 1.09001 * 109.46870 * 59.99312 * 3 2 1 34 34 H 1.09001 * 109.46885 * 180.02562 * 6 2 1 35 35 H 1.08995 * 109.46933 * 60.00376 * 6 2 1 36 36 H 0.97004 * 119.99940 * 0.02562 * 7 6 2 37 37 H 0.96997 * 120.00904 * 354.78604 * 12 10 8 38 38 H 1.07997 * 119.96759 * 359.97438 * 14 13 12 39 39 H 1.08007 * 119.92653 * 180.02562 * 15 14 13 40 40 H 1.08001 * 119.96095 * 180.29791 * 16 15 14 41 41 H 0.97004 * 119.99970 * 180.02562 * 22 21 19 42 42 H 1.08000 * 120.07407 * 180.25585 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3994 -1.2295 -2.1293 6 6 2.0399 -0.7213 1.2494 7 7 1.5515 -0.0306 2.4455 8 6 1.8774 -0.4907 3.6696 9 8 2.5759 -1.4770 3.7810 10 6 1.3800 0.2137 4.8890 11 8 0.6820 1.2003 4.7776 12 7 1.7055 -0.2468 6.1131 13 6 1.3326 0.4720 7.2518 14 6 1.2886 1.8611 7.2146 15 6 0.9205 2.5720 8.3403 16 6 0.5893 1.9055 9.5046 17 6 0.6368 0.5179 9.5501 18 8 0.3168 -0.1357 10.6962 19 6 0.2589 -1.4814 10.6376 20 1 0.3763 -1.9863 9.6901 21 6 0.0485 -2.2172 11.7938 22 7 -0.0940 -1.6023 12.9480 23 14 -0.0311 -4.0817 11.7128 24 1 1.2508 -4.6093 11.1801 25 1 -0.2624 -4.6269 13.0746 26 1 -1.1443 -4.4913 10.8194 27 6 1.0061 -0.1997 8.4214 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1299 -0.7209 1.2497 35 1 1.6766 -1.7489 1.2493 36 1 0.9936 0.7579 2.3564 37 1 2.1987 -1.0771 6.2037 38 1 1.5432 2.3847 6.3051 39 1 0.8866 3.6511 8.3089 40 1 0.2973 2.4642 10.3815 41 1 -0.2408 -2.1171 13.7569 42 1 1.0398 -1.2788 8.4531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782007487.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:52 Heat of formation + Delta-G solvation = -39.165943 kcal Electronic energy + Delta-G solvation = -26736.807766 eV Core-core repulsion = 22683.278626 eV Total energy + Delta-G solvation = -4053.529140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11403 -39.73594 -38.80851 -38.23734 -36.61098 -36.11388 -34.52870 -33.43798 -32.28985 -29.62662 -28.82928 -28.05942 -27.74267 -25.49036 -24.91766 -22.90222 -21.93412 -21.38860 -20.38538 -19.25402 -18.06454 -17.53181 -17.30192 -16.57921 -16.31517 -16.02354 -15.51964 -15.40890 -15.09298 -14.82558 -14.51263 -14.22499 -14.08730 -14.05523 -13.91695 -13.63529 -13.40283 -13.32691 -13.07218 -12.66999 -12.55918 -12.43903 -12.20199 -11.98875 -11.78989 -11.72416 -11.64827 -11.62518 -11.10472 -11.05750 -10.82314 -10.48905 -10.04275 -9.71713 -9.67695 -9.51908 -8.85323 -7.87121 -7.26806 -6.49301 -4.09319 1.09213 1.87617 2.07921 2.21899 2.28849 2.35566 3.07524 3.11342 3.12906 3.14773 3.16317 3.53719 3.88161 3.93071 4.06780 4.18065 4.27227 4.50443 4.89561 4.96300 5.01481 5.05634 5.11286 5.11824 5.19748 5.22010 5.47233 5.54733 5.58102 5.71097 5.86130 5.91842 6.09748 6.14095 6.48433 6.59730 6.82234 6.85157 6.98318 7.03432 7.19132 7.32034 7.36720 7.56176 7.66611 7.91817 7.95855 8.95856 9.64046 10.68209 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.017624 B = 0.002284 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.402875 B =12255.443722 C =13460.399417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.025 3.975 3 C -0.148 4.148 4 C 0.216 3.784 5 N -0.419 5.419 6 C 0.129 3.871 7 N -0.700 5.700 8 C 0.514 3.486 9 O -0.512 6.512 10 C 0.505 3.495 11 O -0.501 6.501 12 N -0.634 5.634 13 C 0.172 3.828 14 C -0.204 4.204 15 C -0.063 4.063 16 C -0.195 4.195 17 C 0.167 3.833 18 O -0.173 6.173 19 C -0.394 4.394 20 H 0.091 0.909 21 C 0.041 3.959 22 N -0.860 5.860 23 Si 0.940 3.060 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.270 1.270 27 C -0.249 4.249 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.415 0.585 37 H 0.419 0.581 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.271 0.729 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.414 5.237 -22.073 22.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.206 4.206 4 C -0.103 4.103 5 N -0.093 5.093 6 C 0.004 3.996 7 N -0.356 5.356 8 C 0.294 3.706 9 O -0.386 6.386 10 C 0.286 3.714 11 O -0.375 6.375 12 N -0.280 5.280 13 C 0.080 3.920 14 C -0.225 4.225 15 C -0.082 4.082 16 C -0.214 4.214 17 C 0.113 3.887 18 O -0.076 6.076 19 C -0.470 4.470 20 H 0.108 0.892 21 C -0.164 4.164 22 N -0.495 5.495 23 Si 0.765 3.235 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.271 4.271 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.254 0.746 37 H 0.256 0.744 38 H 0.137 0.863 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.081 0.919 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.924 4.399 -23.041 23.639 hybrid contribution -0.150 -0.935 0.220 0.972 sum 2.774 3.464 -22.821 23.248 Atomic orbital electron populations 1.21987 0.90451 1.04091 1.04131 1.18419 0.97700 0.95392 0.86376 1.21983 1.02545 0.91965 1.04123 1.28640 0.93579 0.93694 0.94378 1.81273 1.08346 1.08574 1.11134 1.21400 1.00432 0.96380 0.81342 1.45617 1.53209 1.32467 1.04341 1.20108 0.81213 0.84667 0.84586 1.90807 1.36124 1.25043 1.86670 1.19940 0.81652 0.85354 0.84491 1.90789 1.35090 1.25277 1.86344 1.43132 1.54487 1.26457 1.03908 1.17385 0.98872 0.90864 0.84898 1.20508 1.10919 0.91614 0.99439 1.20523 0.97240 0.98666 0.91740 1.20297 1.10244 0.91684 0.99209 1.19079 0.91500 0.91638 0.86517 1.84025 1.75006 1.21270 1.27293 1.21235 1.51809 0.78317 0.95625 0.89204 1.25282 0.96456 1.00489 0.94160 1.70021 1.44509 1.36423 0.98506 0.85797 0.79200 0.80561 0.77991 1.19455 1.20242 1.19480 1.20845 1.12351 1.00673 0.93220 0.89977 0.90824 0.91006 0.91032 0.90822 0.89997 0.89609 0.89595 0.74634 0.74362 0.86288 0.86396 0.86204 0.91885 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.47 8.26 37.16 0.31 -0.17 16 2 C 0.03 0.10 0.70 -157.29 -0.11 -0.01 16 3 C -0.15 -0.44 8.26 37.16 0.31 -0.13 16 4 C 0.22 1.52 13.86 -20.76 -0.29 1.23 16 5 N -0.42 -4.24 18.54 42.15 0.78 -3.46 16 6 C 0.13 0.74 4.52 -4.04 -0.02 0.72 16 7 N -0.70 -4.94 4.95 -60.76 -0.30 -5.24 16 8 C 0.51 5.56 7.89 -11.63 -0.09 5.47 16 9 O -0.51 -6.68 16.48 5.49 0.09 -6.59 16 10 C 0.50 6.69 7.62 -11.63 -0.09 6.60 16 11 O -0.50 -7.34 14.18 5.48 0.08 -7.26 16 12 N -0.63 -9.32 5.32 -10.31 -0.05 -9.37 16 13 C 0.17 3.10 6.27 -83.77 -0.52 2.57 16 14 C -0.20 -3.56 8.65 -39.33 -0.34 -3.90 16 15 C -0.06 -1.09 10.03 -39.64 -0.40 -1.49 16 16 C -0.19 -3.93 9.99 -39.35 -0.39 -4.33 16 17 C 0.17 3.88 6.64 -39.14 -0.26 3.62 16 18 O -0.17 -4.76 9.76 0.02 0.00 -4.76 16 19 C -0.39 -10.64 9.44 30.89 0.29 -10.35 16 20 H 0.09 2.23 5.30 -52.49 -0.28 1.95 16 21 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 22 N -0.86 -24.62 13.67 55.48 0.76 -23.86 16 23 Si 0.94 20.03 29.55 -169.99 -5.02 15.00 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 27 C -0.25 -5.17 9.05 -39.19 -0.35 -5.52 16 28 H 0.08 0.21 6.86 -51.93 -0.36 -0.15 16 29 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 33 H 0.08 0.19 6.86 -51.93 -0.36 -0.17 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.42 2.29 5.63 -40.82 -0.23 2.06 16 37 H 0.42 5.50 8.30 -40.82 -0.34 5.16 16 38 H 0.12 1.94 6.44 -52.49 -0.34 1.60 16 39 H 0.12 1.66 8.06 -52.48 -0.42 1.23 16 40 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 41 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.13 2.71 5.71 -52.49 -0.30 2.41 16 LS Contribution 368.81 15.07 5.56 5.56 Total: -1.00 -33.34 368.81 -4.89 -38.23 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -4.71 Total: 6.43 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -2.06 Total: -4.67 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 1.18 Total: -41.93 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.17 Total: -18.61 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.34 -4.89 -38.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782007487.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.937 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds