Wall clock time and date at job start Tue Mar 31 2020 16:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47326 * 2 1 4 4 C 1.47196 * 109.47100 * 239.99563 * 2 1 3 5 5 N 2.60800 * 109.47359 * 239.99623 * 2 1 3 6 6 C 1.53009 * 109.46559 * 119.99773 * 2 1 3 7 7 N 1.46497 * 109.47313 * 299.99899 * 6 2 1 8 8 C 1.34769 * 120.00179 * 180.02562 * 7 6 2 9 9 O 1.21363 * 119.99741 * 0.02562 * 8 7 6 10 10 C 1.49356 * 120.00317 * 179.97438 * 8 7 6 11 11 O 1.21369 * 119.99579 * 0.02562 * 10 8 7 12 12 N 1.34768 * 119.99903 * 179.97438 * 10 8 7 13 13 C 1.39726 * 119.99772 * 174.78665 * 12 10 8 14 14 C 1.39026 * 120.04281 * 326.28675 * 13 12 10 15 15 C 1.38135 * 120.06033 * 180.02562 * 14 13 12 16 16 C 1.38182 * 120.14727 * 359.71300 * 15 14 13 17 17 C 1.38914 * 120.08070 * 0.56403 * 16 15 14 18 18 O 1.35759 * 120.03335 * 179.71476 * 17 16 15 19 19 C 1.34830 * 116.99906 * 173.81952 * 18 17 16 20 20 H 1.07996 * 120.00265 * 354.59877 * 19 18 17 21 21 C 1.38655 * 119.99479 * 174.60137 * 19 18 17 22 22 N 1.31550 * 120.00217 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99636 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47399 * 60.00022 * 23 21 19 25 25 H 1.48505 * 109.46878 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47178 * 299.99666 * 23 21 19 27 27 C 1.38762 * 119.93859 * 359.43847 * 17 16 15 28 28 H 1.08998 * 109.47295 * 300.00492 * 1 2 3 29 29 H 1.09002 * 109.46815 * 60.00124 * 1 2 3 30 30 H 1.09003 * 109.47510 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47193 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46687 * 300.00085 * 3 2 1 33 33 H 1.09001 * 109.46870 * 59.99312 * 3 2 1 34 34 H 1.09001 * 109.46885 * 180.02562 * 6 2 1 35 35 H 1.08995 * 109.46933 * 60.00376 * 6 2 1 36 36 H 0.97004 * 119.99940 * 0.02562 * 7 6 2 37 37 H 0.96997 * 120.00904 * 354.78604 * 12 10 8 38 38 H 1.07997 * 119.96759 * 359.97438 * 14 13 12 39 39 H 1.08007 * 119.92653 * 180.02562 * 15 14 13 40 40 H 1.08001 * 119.96095 * 180.29791 * 16 15 14 41 41 H 0.97004 * 119.99970 * 180.02562 * 22 21 19 42 42 H 1.08000 * 120.07407 * 180.25585 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6940 -1.2018 5 7 2.3994 -1.2295 -2.1293 6 6 2.0399 -0.7213 1.2494 7 7 1.5515 -0.0306 2.4455 8 6 1.8774 -0.4907 3.6696 9 8 2.5759 -1.4770 3.7810 10 6 1.3800 0.2137 4.8890 11 8 0.6820 1.2003 4.7776 12 7 1.7055 -0.2468 6.1131 13 6 1.3326 0.4720 7.2518 14 6 1.2886 1.8611 7.2146 15 6 0.9205 2.5720 8.3403 16 6 0.5893 1.9055 9.5046 17 6 0.6368 0.5179 9.5501 18 8 0.3168 -0.1357 10.6962 19 6 0.2589 -1.4814 10.6376 20 1 0.3763 -1.9863 9.6901 21 6 0.0485 -2.2172 11.7938 22 7 -0.0940 -1.6023 12.9480 23 14 -0.0311 -4.0817 11.7128 24 1 1.2508 -4.6093 11.1801 25 1 -0.2624 -4.6269 13.0746 26 1 -1.1443 -4.4913 10.8194 27 6 1.0061 -0.1997 8.4214 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1299 -0.7209 1.2497 35 1 1.6766 -1.7489 1.2493 36 1 0.9936 0.7579 2.3564 37 1 2.1987 -1.0771 6.2037 38 1 1.5432 2.3847 6.3051 39 1 0.8866 3.6511 8.3089 40 1 0.2973 2.4642 10.3815 41 1 -0.2408 -2.1171 13.7569 42 1 1.0398 -1.2788 8.4531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782007487.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:52 Heat of formation + Delta-G solvation = -62.754421 kcal Electronic energy + Delta-G solvation = -26737.830639 eV Core-core repulsion = 22683.278626 eV Total energy + Delta-G solvation = -4054.552013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.15090 -40.89806 -40.04659 -39.09083 -38.13780 -36.84248 -35.78391 -34.23416 -34.11434 -31.10825 -30.37902 -28.41656 -28.29768 -27.31770 -25.88970 -23.74906 -23.50990 -22.44805 -21.43919 -20.40869 -19.66441 -19.05892 -18.05810 -17.51680 -17.25228 -16.92558 -16.79939 -16.67168 -16.21894 -15.93349 -15.80807 -15.55849 -15.39371 -15.05771 -14.70104 -14.55448 -14.49810 -14.23305 -14.06586 -13.88777 -13.55372 -13.31710 -13.05011 -13.02452 -12.85976 -12.70166 -12.57565 -12.50638 -12.37133 -12.13020 -12.06812 -12.01089 -11.49818 -11.29807 -10.81884 -10.68010 -10.39675 -9.38975 -8.90324 -8.45171 -6.13584 -0.00834 0.63251 0.74826 1.07844 1.37461 1.47387 1.52712 1.65892 1.66752 2.05708 2.18992 2.42265 2.83008 2.84485 3.17506 3.32072 3.45891 3.51020 3.70866 3.85865 4.12487 4.32946 4.43442 4.51019 4.56074 4.62273 4.64150 4.76803 4.84016 4.87742 4.90357 5.01550 5.03907 5.11812 5.28223 5.29505 5.32810 5.35922 5.64604 5.68291 5.86184 6.02704 6.15721 6.27540 6.43642 6.63743 6.83109 6.99445 7.78475 8.77218 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.017624 B = 0.002284 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.402875 B =12255.443722 C =13460.399417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.037 3.963 3 C -0.149 4.149 4 C 0.243 3.757 5 N -0.475 5.475 6 C 0.128 3.872 7 N -0.676 5.676 8 C 0.523 3.477 9 O -0.535 6.535 10 C 0.509 3.491 11 O -0.510 6.510 12 N -0.637 5.637 13 C 0.179 3.821 14 C -0.191 4.191 15 C -0.049 4.049 16 C -0.207 4.207 17 C 0.133 3.867 18 O -0.225 6.225 19 C -0.412 4.412 20 H 0.101 0.899 21 C -0.020 4.020 22 N -0.917 5.917 23 Si 1.014 2.986 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.259 1.259 27 C -0.257 4.257 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.426 0.574 37 H 0.426 0.574 38 H 0.142 0.858 39 H 0.161 0.839 40 H 0.121 0.879 41 H 0.273 0.727 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.544 6.088 -24.866 25.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.033 3.967 3 C -0.208 4.208 4 C -0.076 4.076 5 N -0.150 5.150 6 C 0.003 3.997 7 N -0.332 5.332 8 C 0.302 3.698 9 O -0.412 6.412 10 C 0.291 3.709 11 O -0.385 6.385 12 N -0.283 5.283 13 C 0.085 3.915 14 C -0.212 4.212 15 C -0.067 4.067 16 C -0.227 4.227 17 C 0.081 3.919 18 O -0.131 6.131 19 C -0.488 4.488 20 H 0.118 0.882 21 C -0.218 4.218 22 N -0.555 5.555 23 Si 0.834 3.166 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.183 1.183 27 C -0.278 4.278 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.266 0.734 37 H 0.265 0.735 38 H 0.160 0.840 39 H 0.178 0.822 40 H 0.139 0.861 41 H 0.082 0.918 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.056 5.294 -25.931 26.641 hybrid contribution -0.149 -0.936 0.791 1.235 sum 2.907 4.358 -25.140 25.680 Atomic orbital electron populations 1.22050 0.89273 1.04280 1.05241 1.18479 0.98399 0.95611 0.84250 1.22047 1.02575 0.90858 1.05272 1.29085 0.92024 0.92373 0.94097 1.81303 1.10275 1.10398 1.13052 1.21495 1.00619 0.96423 0.81140 1.45492 1.52007 1.32222 1.03465 1.19580 0.81250 0.84281 0.84661 1.90819 1.37495 1.26068 1.86829 1.20342 0.80873 0.85056 0.84622 1.90778 1.35367 1.25788 1.86579 1.43127 1.54791 1.26768 1.03603 1.17412 0.97542 0.91419 0.85086 1.20910 1.08761 0.91365 1.00148 1.20968 0.94845 1.00728 0.90149 1.20558 1.10736 0.90738 1.00679 1.19628 0.92854 0.92978 0.86417 1.83986 1.77894 1.21611 1.29623 1.21710 1.51887 0.78800 0.96407 0.88174 1.26522 0.95927 1.05862 0.93524 1.70165 1.47398 1.38529 0.99400 0.84702 0.79859 0.73762 0.78280 1.18116 1.19766 1.18332 1.20860 1.12730 1.00510 0.93743 0.88802 0.89832 0.91356 0.91158 0.89865 0.88711 0.89444 0.89696 0.73387 0.73528 0.84035 0.82175 0.86103 0.91835 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 8.26 71.98 0.59 0.10 16 2 C 0.04 0.20 0.70 -53.99 -0.04 0.17 16 3 C -0.15 -0.40 8.26 71.98 0.59 0.20 16 4 C 0.24 3.01 13.86 89.44 1.24 4.25 16 5 N -0.48 -9.28 18.54 20.01 0.37 -8.91 16 6 C 0.13 1.12 4.52 86.38 0.39 1.51 16 7 N -0.68 -7.34 4.95 -464.51 -2.30 -9.64 16 8 C 0.52 9.88 7.89 87.24 0.69 10.57 16 9 O -0.54 -12.83 16.48 -3.29 -0.05 -12.89 16 10 C 0.51 12.05 7.62 87.24 0.66 12.72 16 11 O -0.51 -13.15 14.18 -3.30 -0.05 -13.19 16 12 N -0.64 -17.42 5.32 -304.89 -1.62 -19.05 16 13 C 0.18 6.14 6.27 38.20 0.24 6.38 16 14 C -0.19 -6.08 8.65 22.43 0.19 -5.88 16 15 C -0.05 -1.54 10.03 22.23 0.22 -1.32 16 16 C -0.21 -8.35 9.99 22.42 0.22 -8.13 16 17 C 0.13 6.33 6.64 22.56 0.15 6.48 16 18 O -0.22 -13.07 9.76 -22.84 -0.22 -13.29 16 19 C -0.41 -23.24 9.44 67.92 0.64 -22.60 16 20 H 0.10 5.16 5.30 -2.91 -0.02 5.15 16 21 C -0.02 -1.13 5.49 84.83 0.47 -0.66 16 22 N -0.92 -55.09 13.67 21.61 0.30 -54.80 16 23 Si 1.01 41.92 29.55 68.60 2.03 43.95 16 24 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 26 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 27 C -0.26 -10.72 9.05 22.52 0.20 -10.52 16 28 H 0.09 0.12 6.86 -2.39 -0.02 0.11 16 29 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.09 0.04 6.86 -2.39 -0.02 0.03 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.43 3.02 5.63 -92.71 -0.52 2.50 16 37 H 0.43 10.58 8.30 -92.71 -0.77 9.81 16 38 H 0.14 3.95 6.44 -2.91 -0.02 3.93 16 39 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 41 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 42 H 0.13 5.30 5.71 -2.91 -0.02 5.29 16 Total: -1.00 -76.19 368.81 4.73 -71.46 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: -0.19 Total: 23.11 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 6.47 Total: -6.75 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -3.26 Total: -92.39 kcal Atomic # 8 Polarization: -39.05 SS G_CDS: -0.32 Total: -39.37 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -76.19 4.73 -71.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782007487.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.706 kcal (2) G-P(sol) polarization free energy of solvation -76.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds