Wall clock time and date at job start Tue Mar 31 2020 15:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38388 * 120.85689 * 2 1 4 4 C 1.38315 * 119.30835 * 179.97438 * 3 2 1 5 5 N 1.31965 * 121.09401 * 0.02562 * 4 3 2 6 6 C 1.31655 * 121.88575 * 359.97438 * 5 4 3 7 7 C 1.39618 * 120.55706 * 359.74067 * 6 5 4 8 8 C 1.47718 * 120.56544 * 180.28870 * 7 6 5 9 9 O 1.21473 * 120.00134 * 186.12000 * 8 7 6 10 10 O 1.34711 * 120.00032 * 6.11679 * 8 7 6 11 11 C 1.45195 * 116.99904 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47277 * 180.02562 * 11 10 8 13 13 O 1.21281 * 119.99985 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00588 * 180.02562 * 12 11 10 15 15 C 1.46494 * 120.00548 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.47389 * 89.99809 * 15 14 12 17 17 H 1.07998 * 120.00061 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00027 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00243 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99817 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47438 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46764 * 120.00138 * 20 18 16 23 23 H 1.48497 * 109.47352 * 240.00409 * 20 18 16 24 24 C 1.46504 * 119.99701 * 0.02562 * 14 12 11 25 25 C 1.52996 * 109.47701 * 89.99859 * 24 14 12 26 26 C 1.47198 * 109.47366 * 180.02562 * 25 24 14 27 27 N 9.15455 * 64.25742 * 190.44013 * 2 1 3 28 28 H 1.08996 * 109.47213 * 96.28640 * 1 2 3 29 29 H 1.09007 * 109.47102 * 336.28495 * 1 2 3 30 30 H 1.09001 * 109.47028 * 216.29305 * 1 2 3 31 31 H 1.07997 * 120.34532 * 359.94888 * 3 2 1 32 32 H 1.08003 * 119.45050 * 179.97438 * 4 3 2 33 33 H 1.07995 * 119.72142 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47538 * 300.00088 * 11 10 8 35 35 H 1.09002 * 109.47248 * 60.00618 * 11 10 8 36 36 H 1.09004 * 109.47553 * 210.00061 * 15 14 12 37 37 H 1.09003 * 109.46968 * 329.99331 * 15 14 12 38 38 H 0.96992 * 120.00055 * 180.02562 * 19 18 16 39 39 H 1.09005 * 109.47040 * 210.00279 * 24 14 12 40 40 H 1.09001 * 109.46846 * 329.99552 * 24 14 12 41 41 H 1.09001 * 109.46751 * 300.00383 * 25 24 14 42 42 H 1.09001 * 109.47222 * 59.99923 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1880 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2502 0.0026 0.0005 6 6 3.6206 -1.1537 0.0005 7 6 2.2253 -1.2021 0.0060 8 6 1.5187 -2.4993 0.0124 9 8 0.3092 -2.5327 -0.0951 10 8 2.2156 -3.6454 0.1373 11 6 1.4557 -4.8826 0.1351 12 6 2.3966 -6.0503 0.2840 13 8 3.5902 -5.8587 0.3819 14 7 1.9119 -7.3076 0.3074 15 6 2.8265 -8.4427 0.4527 16 6 3.0104 -8.7557 1.9153 17 1 2.4971 -8.1681 2.6619 18 6 3.8342 -9.7922 2.3002 19 7 4.4598 -10.5075 1.3910 20 14 4.0627 -10.1796 4.1132 21 1 3.2558 -9.2350 4.9269 22 1 3.6163 -11.5702 4.3823 23 1 5.4971 -10.0421 4.4719 24 6 0.4703 -7.5392 0.1875 25 6 0.1000 -7.6973 -1.2885 26 6 -1.3485 -7.9294 -1.4090 27 7 -2.4691 -8.1095 -1.4942 28 1 -0.3633 -0.1125 -1.0214 29 1 -0.3634 0.9409 0.4133 30 1 -0.3633 -0.8283 0.6083 31 1 1.6966 2.1344 -0.0008 32 1 4.1557 2.0764 0.0001 33 1 4.1882 -2.0724 0.0010 34 1 0.7499 -4.8770 0.9657 35 1 0.9105 -4.9724 -0.8045 36 1 2.4099 -9.3125 -0.0554 37 1 3.7907 -8.1913 0.0108 38 1 5.0389 -11.2368 1.6619 39 1 0.2018 -8.4466 0.7287 40 1 -0.0701 -6.6916 0.6089 41 1 0.3685 -6.7900 -1.8296 42 1 0.6404 -8.5450 -1.7100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785893048.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:02 Heat of formation + Delta-G solvation = -51.528644 kcal Electronic energy + Delta-G solvation = -27242.868180 eV Core-core repulsion = 23188.802954 eV Total energy + Delta-G solvation = -4054.065227 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.18052 -39.99684 -39.09746 -36.95824 -36.56775 -35.30598 -34.11545 -32.97537 -32.06767 -30.94483 -29.45201 -28.29078 -26.78874 -24.91241 -24.12657 -23.07013 -22.48553 -21.32102 -18.95845 -18.38920 -17.77173 -17.08996 -16.78766 -16.62861 -16.53226 -16.45628 -16.11720 -15.49792 -14.93816 -14.76386 -14.66191 -14.30644 -14.18563 -13.71932 -13.34728 -13.18184 -13.06941 -13.06219 -12.75836 -12.72785 -12.50288 -12.39852 -12.27812 -12.13471 -11.80872 -11.35641 -11.09269 -10.99338 -10.75110 -10.70485 -10.62005 -10.24525 -9.93815 -9.77899 -9.76336 -9.59448 -9.19145 -8.52454 -7.99716 -6.14152 -4.19083 0.20730 0.83825 2.21234 2.27989 2.67028 2.76818 3.06995 3.25853 3.34426 3.37368 3.44655 3.55043 4.01455 4.12097 4.28319 4.31236 4.37454 4.48788 4.65938 4.74481 4.86812 4.96777 4.98913 5.09357 5.12834 5.19758 5.21871 5.33023 5.37487 5.39517 5.49342 5.73060 5.74697 5.88168 5.97952 6.16727 6.29076 6.79628 7.23328 7.31323 7.47144 7.53811 7.57868 7.81628 8.05874 8.10244 8.67644 8.86850 9.46847 10.94090 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.010541 B = 0.003097 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.651684 B = 9039.305926 C =11024.926125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.024 3.976 3 C -0.192 4.192 4 C 0.134 3.866 5 N -0.496 5.496 6 C 0.170 3.830 7 C -0.184 4.184 8 C 0.514 3.486 9 O -0.502 6.502 10 O -0.323 6.323 11 C 0.048 3.952 12 C 0.509 3.491 13 O -0.508 6.508 14 N -0.591 5.591 15 C 0.246 3.754 16 C -0.532 4.532 17 H 0.060 0.940 18 C 0.064 3.936 19 N -0.892 5.892 20 Si 0.898 3.102 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.282 1.282 24 C 0.112 3.888 25 C -0.051 4.051 26 C 0.215 3.785 27 N -0.442 5.442 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.098 0.902 31 H 0.144 0.856 32 H 0.163 0.837 33 H 0.178 0.822 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.039 0.961 37 H 0.049 0.951 38 H 0.264 0.736 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.969 19.920 -5.177 21.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.016 3.984 3 C -0.212 4.212 4 C -0.022 4.022 5 N -0.204 5.204 6 C 0.012 3.988 7 C -0.187 4.187 8 C 0.359 3.641 9 O -0.392 6.392 10 O -0.238 6.238 11 C -0.030 4.030 12 C 0.293 3.707 13 O -0.382 6.382 14 N -0.324 5.324 15 C 0.128 3.872 16 C -0.570 4.570 17 H 0.078 0.922 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.725 3.275 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.208 1.208 24 C -0.014 4.014 25 C -0.092 4.092 26 C -0.103 4.103 27 N -0.119 5.119 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.116 0.884 31 H 0.162 0.838 32 H 0.180 0.820 33 H 0.195 0.805 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.094 0.906 41 H 0.123 0.877 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.282 19.551 -5.295 21.524 hybrid contribution -0.501 -0.327 1.002 1.167 sum -7.783 19.224 -4.293 21.179 Atomic orbital electron populations 1.21161 0.88946 1.03943 1.04267 1.20502 0.97568 0.91123 0.89175 1.22044 0.95578 0.98473 1.05105 1.23125 0.91766 0.96745 0.90554 1.67867 1.40667 0.98238 1.13671 1.23455 0.90348 0.97144 0.87833 1.20025 0.95431 0.90854 1.12424 1.20904 0.85620 0.84506 0.73090 1.90796 1.14688 1.87670 1.46001 1.86594 1.40340 1.13937 1.82883 1.23031 0.94165 0.81359 1.04420 1.19707 0.88788 0.83437 0.78725 1.90748 1.15641 1.84180 1.47638 1.48155 1.06667 1.06726 1.70898 1.19431 0.89011 0.81275 0.97498 1.21437 1.28250 1.15349 0.91998 0.92213 1.24912 0.95194 0.95900 0.97902 1.69919 1.29779 1.20364 1.33025 0.86449 0.78161 0.78001 0.84858 1.19770 1.20965 1.20814 1.21405 0.82717 1.04308 0.92976 1.19887 0.82687 1.05840 1.00797 1.29127 0.94975 0.92952 0.93218 1.81305 1.12758 1.09313 1.08567 0.89690 0.91347 0.88357 0.83843 0.82020 0.80484 0.88287 0.88487 0.94290 0.93288 0.92628 0.88163 0.90628 0.87652 0.86182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 8.86 36.01 0.32 -0.72 16 2 C 0.02 0.23 5.95 -103.89 -0.62 -0.39 16 3 C -0.19 -1.41 9.78 -39.50 -0.39 -1.80 16 4 C 0.13 1.08 11.17 -17.47 -0.20 0.89 16 5 N -0.50 -5.53 10.35 -12.89 -0.13 -5.66 16 6 C 0.17 1.98 10.79 -17.11 -0.18 1.79 16 7 C -0.18 -2.11 5.89 -104.84 -0.62 -2.72 16 8 C 0.51 6.65 7.85 34.60 0.27 6.92 16 9 O -0.50 -6.73 13.29 -19.25 -0.26 -6.98 16 10 O -0.32 -4.67 9.05 -47.20 -0.43 -5.10 16 11 C 0.05 0.64 4.50 36.01 0.16 0.80 16 12 C 0.51 9.10 7.75 -10.99 -0.09 9.02 16 13 O -0.51 -11.54 16.08 -14.10 -0.23 -11.76 16 14 N -0.59 -10.29 2.46 -175.06 -0.43 -10.72 16 15 C 0.25 5.59 5.16 -5.20 -0.03 5.56 16 16 C -0.53 -13.80 9.39 -34.44 -0.32 -14.12 16 17 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -24.93 13.29 55.43 0.74 -24.19 16 20 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.11 1.40 5.17 -4.04 -0.02 1.38 16 25 C -0.05 -0.50 6.03 -29.52 -0.18 -0.68 16 26 C 0.22 2.53 15.44 -20.69 -0.32 2.21 16 27 N -0.44 -6.43 18.55 42.24 0.78 -5.65 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 30 H 0.10 0.98 5.93 -51.93 -0.31 0.67 16 31 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.16 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.18 2.06 7.64 -52.49 -0.40 1.66 16 34 H 0.10 1.19 7.40 -51.93 -0.38 0.80 16 35 H 0.10 1.03 7.18 -51.93 -0.37 0.66 16 36 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 37 H 0.05 1.28 7.42 -51.93 -0.39 0.89 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.10 1.33 8.07 -51.93 -0.42 0.91 16 40 H 0.08 0.78 6.44 -51.93 -0.33 0.45 16 41 H 0.11 0.83 7.22 -51.93 -0.38 0.46 16 42 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 375.07 15.07 5.65 5.65 Total: -1.00 -34.03 375.07 -6.68 -40.70 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -5.05 Total: -1.92 kcal Atomic # 6 Polarization: 12.06 SS G_CDS: -2.30 Total: 9.76 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.96 Total: -46.22 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.91 Total: -23.85 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.03 -6.68 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785893048.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.825 kcal (2) G-P(sol) polarization free energy of solvation -34.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds