Wall clock time and date at job start Tue Mar 31 2020 15:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38388 * 120.85689 * 2 1 4 4 C 1.38315 * 119.30835 * 179.97438 * 3 2 1 5 5 N 1.31965 * 121.09401 * 0.02562 * 4 3 2 6 6 C 1.31655 * 121.88575 * 359.97438 * 5 4 3 7 7 C 1.39618 * 120.55706 * 359.74067 * 6 5 4 8 8 C 1.47718 * 120.56544 * 180.28870 * 7 6 5 9 9 O 1.21473 * 120.00134 * 186.12000 * 8 7 6 10 10 O 1.34711 * 120.00032 * 6.11679 * 8 7 6 11 11 C 1.45195 * 116.99904 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47277 * 180.02562 * 11 10 8 13 13 O 1.21281 * 119.99985 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00588 * 180.02562 * 12 11 10 15 15 C 1.46494 * 120.00548 * 180.02562 * 14 12 11 16 16 C 1.50694 * 109.47389 * 89.99809 * 15 14 12 17 17 H 1.07998 * 120.00061 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00027 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00243 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99817 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47438 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46764 * 120.00138 * 20 18 16 23 23 H 1.48497 * 109.47352 * 240.00409 * 20 18 16 24 24 C 1.46504 * 119.99701 * 0.02562 * 14 12 11 25 25 C 1.52996 * 109.47701 * 89.99859 * 24 14 12 26 26 C 1.47198 * 109.47366 * 180.02562 * 25 24 14 27 27 N 9.15455 * 64.25742 * 190.44013 * 2 1 3 28 28 H 1.08996 * 109.47213 * 96.28640 * 1 2 3 29 29 H 1.09007 * 109.47102 * 336.28495 * 1 2 3 30 30 H 1.09001 * 109.47028 * 216.29305 * 1 2 3 31 31 H 1.07997 * 120.34532 * 359.94888 * 3 2 1 32 32 H 1.08003 * 119.45050 * 179.97438 * 4 3 2 33 33 H 1.07995 * 119.72142 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47538 * 300.00088 * 11 10 8 35 35 H 1.09002 * 109.47248 * 60.00618 * 11 10 8 36 36 H 1.09004 * 109.47553 * 210.00061 * 15 14 12 37 37 H 1.09003 * 109.46968 * 329.99331 * 15 14 12 38 38 H 0.96992 * 120.00055 * 180.02562 * 19 18 16 39 39 H 1.09005 * 109.47040 * 210.00279 * 24 14 12 40 40 H 1.09001 * 109.46846 * 329.99552 * 24 14 12 41 41 H 1.09001 * 109.46751 * 300.00383 * 25 24 14 42 42 H 1.09001 * 109.47222 * 59.99923 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1880 0.0000 4 6 3.5994 1.1506 0.0005 5 7 4.2502 0.0026 0.0005 6 6 3.6206 -1.1537 0.0005 7 6 2.2253 -1.2021 0.0060 8 6 1.5187 -2.4993 0.0124 9 8 0.3092 -2.5327 -0.0951 10 8 2.2156 -3.6454 0.1373 11 6 1.4557 -4.8826 0.1351 12 6 2.3966 -6.0503 0.2840 13 8 3.5902 -5.8587 0.3819 14 7 1.9119 -7.3076 0.3074 15 6 2.8265 -8.4427 0.4527 16 6 3.0104 -8.7557 1.9153 17 1 2.4971 -8.1681 2.6619 18 6 3.8342 -9.7922 2.3002 19 7 4.4598 -10.5075 1.3910 20 14 4.0627 -10.1796 4.1132 21 1 3.2558 -9.2350 4.9269 22 1 3.6163 -11.5702 4.3823 23 1 5.4971 -10.0421 4.4719 24 6 0.4703 -7.5392 0.1875 25 6 0.1000 -7.6973 -1.2885 26 6 -1.3485 -7.9294 -1.4090 27 7 -2.4691 -8.1095 -1.4942 28 1 -0.3633 -0.1125 -1.0214 29 1 -0.3634 0.9409 0.4133 30 1 -0.3633 -0.8283 0.6083 31 1 1.6966 2.1344 -0.0008 32 1 4.1557 2.0764 0.0001 33 1 4.1882 -2.0724 0.0010 34 1 0.7499 -4.8770 0.9657 35 1 0.9105 -4.9724 -0.8045 36 1 2.4099 -9.3125 -0.0554 37 1 3.7907 -8.1913 0.0108 38 1 5.0389 -11.2368 1.6619 39 1 0.2018 -8.4466 0.7287 40 1 -0.0701 -6.6916 0.6089 41 1 0.3685 -6.7900 -1.8296 42 1 0.6404 -8.5450 -1.7100 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785893048.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:01 Heat of formation + Delta-G solvation = -71.790716 kcal Electronic energy + Delta-G solvation = -27243.746810 eV Core-core repulsion = 23188.802954 eV Total energy + Delta-G solvation = -4054.943856 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.08169 -41.03592 -40.30787 -38.05093 -37.62814 -36.69468 -34.88144 -34.83866 -32.83773 -32.21606 -30.73346 -29.10346 -28.31557 -25.78765 -25.36567 -24.54916 -23.39283 -22.22702 -20.30975 -19.36304 -18.89464 -18.39974 -18.08535 -17.76038 -17.67171 -17.32848 -17.07146 -16.88619 -16.21110 -16.03371 -15.72028 -15.28477 -15.22022 -14.82304 -14.50600 -14.40916 -13.96272 -13.85883 -13.75724 -13.69261 -13.58585 -13.56582 -13.46461 -13.18242 -13.10982 -12.95512 -12.71593 -12.53853 -12.19272 -12.05144 -11.76328 -11.64616 -11.49559 -10.69959 -10.67585 -10.58586 -10.53455 -10.28044 -9.57274 -8.18322 -6.29896 -0.56090 0.13904 1.17567 1.37201 1.40156 1.43290 1.53011 1.58855 1.78880 1.82390 2.30220 2.45159 2.71020 3.03761 3.14650 3.32636 3.54748 3.58601 3.63033 3.74976 3.88426 3.98467 4.00236 4.09951 4.13943 4.37183 4.53422 4.61164 4.69280 4.74960 4.80639 4.81469 4.99428 5.02503 5.11632 5.15644 5.33290 5.39572 5.56907 5.59716 5.83885 6.11637 6.47701 6.58686 6.63856 6.79605 6.84001 7.26101 7.42804 8.88875 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.010541 B = 0.003097 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.651684 B = 9039.305926 C =11024.926125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.017 3.983 3 C -0.176 4.176 4 C 0.132 3.868 5 N -0.522 5.522 6 C 0.156 3.844 7 C -0.202 4.202 8 C 0.516 3.484 9 O -0.508 6.508 10 O -0.343 6.343 11 C 0.055 3.945 12 C 0.506 3.494 13 O -0.567 6.567 14 N -0.589 5.589 15 C 0.260 3.740 16 C -0.541 4.541 17 H 0.055 0.945 18 C 0.013 3.987 19 N -0.924 5.924 20 Si 0.957 3.043 21 H -0.268 1.268 22 H -0.274 1.274 23 H -0.285 1.285 24 C 0.107 3.893 25 C -0.039 4.039 26 C 0.245 3.755 27 N -0.488 5.488 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.184 0.816 32 H 0.198 0.802 33 H 0.162 0.838 34 H 0.120 0.880 35 H 0.133 0.867 36 H 0.043 0.957 37 H 0.008 0.992 38 H 0.266 0.734 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.135 0.865 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.708 22.388 -5.007 24.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.009 3.991 3 C -0.196 4.196 4 C -0.022 4.022 5 N -0.231 5.231 6 C -0.002 4.002 7 C -0.206 4.206 8 C 0.362 3.638 9 O -0.398 6.398 10 O -0.259 6.259 11 C -0.021 4.021 12 C 0.293 3.707 13 O -0.446 6.446 14 N -0.321 5.321 15 C 0.140 3.860 16 C -0.580 4.580 17 H 0.073 0.927 18 C -0.187 4.187 19 N -0.564 5.564 20 Si 0.782 3.218 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.212 1.212 24 C -0.017 4.017 25 C -0.080 4.080 26 C -0.073 4.073 27 N -0.166 5.166 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.201 0.799 32 H 0.214 0.786 33 H 0.180 0.820 34 H 0.138 0.862 35 H 0.150 0.850 36 H 0.061 0.939 37 H 0.026 0.974 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.152 0.848 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.083 22.021 -5.132 24.367 hybrid contribution 0.060 -0.987 0.934 1.360 sum -9.023 21.034 -4.198 23.269 Atomic orbital electron populations 1.21145 0.87950 1.04661 1.04158 1.20808 0.98368 0.91015 0.88877 1.22454 0.95240 0.99213 1.02656 1.23773 0.92696 0.96834 0.88946 1.67856 1.41641 0.98957 1.14664 1.23265 0.90590 0.97212 0.89108 1.20066 0.95393 0.90959 1.14143 1.21135 0.85602 0.84406 0.72680 1.90786 1.14748 1.87701 1.46583 1.86598 1.41329 1.14628 1.83302 1.22993 0.92663 0.79424 1.07030 1.20455 0.88698 0.84428 0.77138 1.90722 1.18447 1.85116 1.50289 1.47981 1.08155 1.05539 1.70424 1.18902 0.88580 0.83012 0.95545 1.21779 1.27813 1.14922 0.93504 0.92708 1.25691 0.95151 0.96074 1.01743 1.70015 1.30600 1.21001 1.34788 0.85529 0.77730 0.78201 0.80318 1.19272 1.19904 1.21154 1.21641 0.79689 1.05370 0.95006 1.19847 0.81424 1.07618 0.99143 1.29207 0.94796 0.91446 0.91810 1.81348 1.14208 1.11042 1.10032 0.89494 0.88523 0.90320 0.79889 0.78558 0.82049 0.86244 0.84988 0.93938 0.97372 0.92538 0.88868 0.87700 0.84764 0.85542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 8.86 71.24 0.63 -1.06 16 2 C 0.02 0.28 5.95 -19.39 -0.12 0.17 16 3 C -0.18 -1.98 9.78 22.32 0.22 -1.76 16 4 C 0.13 1.81 11.17 84.69 0.95 2.75 16 5 N -0.52 -11.35 10.35 -194.71 -2.01 -13.36 16 6 C 0.16 3.72 10.79 85.05 0.92 4.64 16 7 C -0.20 -4.55 5.89 -20.00 -0.12 -4.66 16 8 C 0.52 13.09 7.85 70.33 0.55 13.65 16 9 O -0.51 -12.89 13.29 19.92 0.26 -12.62 16 10 O -0.34 -9.95 9.05 -49.82 -0.45 -10.40 16 11 C 0.06 1.41 4.50 71.24 0.32 1.73 16 12 C 0.51 18.17 7.75 87.66 0.68 18.85 16 13 O -0.57 -26.94 16.08 15.76 0.25 -26.68 16 14 N -0.59 -20.36 2.46 -826.17 -2.03 -22.39 16 15 C 0.26 12.14 5.16 85.63 0.44 12.58 16 16 C -0.54 -28.60 9.39 25.60 0.24 -28.36 16 17 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 18 C 0.01 0.70 5.46 84.66 0.46 1.16 16 19 N -0.92 -52.74 13.29 21.45 0.28 -52.45 16 20 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 24 C 0.11 2.48 5.17 86.38 0.45 2.92 16 25 C -0.04 -0.67 6.03 28.79 0.17 -0.50 16 26 C 0.24 5.23 15.44 89.42 1.38 6.61 16 27 N -0.49 -13.50 18.55 20.03 0.37 -13.13 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 0.76 8.07 -2.38 -0.02 0.74 16 30 H 0.08 1.43 5.93 -2.39 -0.01 1.42 16 31 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 32 H 0.20 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.16 4.15 7.64 -2.91 -0.02 4.13 16 34 H 0.12 2.58 7.40 -2.39 -0.02 2.56 16 35 H 0.13 2.41 7.18 -2.39 -0.02 2.39 16 36 H 0.04 1.94 8.07 -2.38 -0.02 1.92 16 37 H 0.01 0.45 7.42 -2.39 -0.02 0.43 16 38 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 39 H 0.09 2.34 8.07 -2.38 -0.02 2.32 16 40 H 0.10 1.85 6.44 -2.39 -0.02 1.83 16 41 H 0.13 1.63 7.22 -2.39 -0.02 1.61 16 42 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -77.77 375.07 6.95 -70.82 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: 1.06 Total: 6.29 kcal Atomic # 6 Polarization: 21.52 SS G_CDS: 7.18 Total: 28.70 kcal Atomic # 7 Polarization: -97.94 SS G_CDS: -3.39 Total: -101.33 kcal Atomic # 8 Polarization: -49.77 SS G_CDS: 0.07 Total: -49.70 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -77.77 6.95 -70.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785893048.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.970 kcal (2) G-P(sol) polarization free energy of solvation -77.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds