Wall clock time and date at job start Tue Mar 31 2020 16:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47149 * 2 1 4 4 C 1.50699 * 109.46918 * 119.99443 * 2 1 3 5 5 N 1.29918 * 124.85189 * 120.01772 * 4 2 1 6 6 C 1.36074 * 108.80577 * 179.97438 * 5 4 2 7 7 C 1.39525 * 133.72738 * 180.02562 * 6 5 4 8 8 C 1.38359 * 119.66605 * 179.97438 * 7 6 5 9 9 N 1.39865 * 119.86974 * 180.02562 * 8 7 6 10 10 C 1.34770 * 120.00414 * 213.48256 * 9 8 7 11 11 O 1.21390 * 119.99489 * 5.28468 * 10 9 8 12 12 C 1.49343 * 120.00359 * 185.28128 * 10 9 8 13 13 O 1.21353 * 119.99986 * 0.02562 * 12 10 9 14 14 N 1.34783 * 119.99861 * 180.02562 * 12 10 9 15 15 C 1.46497 * 119.99533 * 179.97438 * 14 12 10 16 16 C 1.50699 * 109.46873 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00205 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99877 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99622 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00273 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46959 * 89.99856 * 20 18 16 22 22 H 1.48500 * 109.47116 * 210.00277 * 20 18 16 23 23 H 1.48503 * 109.46622 * 330.00170 * 20 18 16 24 24 C 1.39351 * 120.25904 * 0.02562 * 8 7 6 25 25 C 1.37794 * 120.40072 * 0.25113 * 24 8 7 26 26 C 1.38720 * 119.97764 * 359.49327 * 25 24 8 27 27 O 1.34212 * 124.85313 * 299.97459 * 4 2 1 28 28 H 1.08998 * 109.47607 * 300.00518 * 1 2 3 29 29 H 1.08998 * 109.47030 * 60.00717 * 1 2 3 30 30 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47607 * 239.99481 * 2 1 3 32 32 H 1.09000 * 109.46898 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46570 * 299.99566 * 3 2 1 34 34 H 1.08998 * 109.47290 * 59.99287 * 3 2 1 35 35 H 1.07997 * 120.16635 * 359.97438 * 7 6 5 36 36 H 0.97008 * 119.99818 * 33.48467 * 9 8 7 37 37 H 0.96995 * 120.00289 * 0.02562 * 14 12 10 38 38 H 1.08997 * 109.47576 * 299.99901 * 15 14 12 39 39 H 1.09003 * 109.47465 * 60.00079 * 15 14 12 40 40 H 0.97003 * 119.99532 * 179.97438 * 19 18 16 41 41 H 1.07995 * 119.80073 * 179.97438 * 24 8 7 42 42 H 1.08001 * 120.01089 * 179.71878 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0322 -0.7103 1.2305 5 7 2.7826 -1.7709 1.2213 6 6 3.0415 -2.1362 2.5063 7 6 3.7752 -3.1722 3.0852 8 6 3.8476 -3.2731 4.4632 9 7 4.5823 -4.3096 5.0480 10 6 4.1760 -4.8489 6.2144 11 8 3.1228 -4.5027 6.7088 12 6 5.0214 -5.8724 6.8986 13 8 6.0745 -6.2182 6.4045 14 7 4.6147 -6.4120 8.0648 15 6 5.4438 -7.4164 8.7356 16 6 4.7692 -7.8548 10.0099 17 1 3.8183 -7.4277 10.2920 18 6 5.3666 -8.8005 10.8160 19 7 4.7781 -9.1827 11.9284 20 14 7.0124 -9.5378 10.3291 21 1 8.1106 -8.7177 10.9006 22 1 7.1073 -10.9249 10.8509 23 1 7.1277 -9.5568 8.8487 24 6 3.1913 -2.3462 5.2706 25 6 2.4602 -1.3237 4.7060 26 6 2.3831 -1.2068 3.3259 27 8 1.7691 -0.3372 2.4926 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 4.2840 -3.8916 2.4608 36 1 5.3844 -4.6404 4.6141 37 1 3.7729 -6.1359 8.4596 38 1 5.5751 -8.2765 8.0791 39 1 6.4176 -6.9862 8.9699 40 1 5.1982 -9.8483 12.4953 41 1 3.2525 -2.4322 6.3454 42 1 1.9504 -0.6114 5.3378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787600396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:54 Heat of formation + Delta-G solvation = -33.719448 kcal Electronic energy + Delta-G solvation = -26507.221959 eV Core-core repulsion = 22453.928997 eV Total energy + Delta-G solvation = -4053.292962 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.54448 -40.89620 -38.92288 -37.74177 -36.17728 -35.30290 -34.67550 -34.10851 -32.44616 -30.53850 -29.33403 -28.37393 -27.78580 -25.25001 -24.53876 -23.04280 -22.43654 -21.69097 -21.07381 -20.12292 -19.00832 -18.38407 -17.51975 -17.01585 -16.88254 -16.55327 -16.03353 -15.79243 -15.40196 -15.11604 -14.69844 -14.52970 -14.37723 -14.18652 -13.87305 -13.79366 -13.42532 -13.27198 -12.90153 -12.73277 -12.48592 -12.31187 -12.24647 -12.04107 -11.97168 -11.61940 -11.55344 -11.47869 -11.11916 -10.86773 -10.82327 -10.49732 -10.06688 -9.60355 -9.40250 -8.89893 -8.76081 -8.47893 -8.40245 -6.28338 -4.32566 0.38128 0.74657 1.62962 2.11310 2.14255 2.38564 3.20549 3.25081 3.28093 3.33709 3.35200 3.50482 3.84559 4.18367 4.25517 4.27658 4.41806 4.50568 4.68098 4.79869 4.83015 4.95046 4.99997 5.04225 5.05850 5.14329 5.21498 5.33848 5.35211 5.62243 5.63576 5.68164 5.81241 5.83629 5.92452 5.98665 6.40623 6.54518 6.78171 6.87141 6.95240 7.20408 7.31014 7.58314 7.92903 8.29688 8.39994 8.71340 9.28830 10.83312 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.041908 B = 0.001862 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.966493 B =15031.973675 C =15383.171054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.003 4.003 3 C -0.151 4.151 4 C 0.255 3.745 5 N -0.479 5.479 6 C 0.041 3.959 7 C -0.092 4.092 8 C 0.157 3.843 9 N -0.649 5.649 10 C 0.512 3.488 11 O -0.498 6.498 12 C 0.494 3.506 13 O -0.536 6.536 14 N -0.662 5.662 15 C 0.217 3.783 16 C -0.550 4.550 17 H 0.083 0.917 18 C 0.080 3.920 19 N -0.887 5.887 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.261 1.261 24 C -0.090 4.090 25 C -0.071 4.071 26 C -0.006 4.006 27 O -0.210 6.210 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.142 0.858 36 H 0.426 0.574 37 H 0.411 0.589 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.269 0.731 41 H 0.156 0.844 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.003 20.747 -23.331 31.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 C -0.209 4.209 4 C 0.043 3.957 5 N -0.209 5.209 6 C -0.071 4.071 7 C -0.113 4.113 8 C 0.061 3.939 9 N -0.297 5.297 10 C 0.295 3.705 11 O -0.371 6.371 12 C 0.273 3.727 13 O -0.415 6.415 14 N -0.312 5.312 15 C 0.096 3.904 16 C -0.588 4.588 17 H 0.101 0.899 18 C -0.125 4.125 19 N -0.524 5.524 20 Si 0.703 3.297 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.185 1.185 24 C -0.110 4.110 25 C -0.090 4.090 26 C -0.056 4.056 27 O -0.101 6.101 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.160 0.840 36 H 0.264 0.736 37 H 0.247 0.753 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.079 0.921 41 H 0.173 0.827 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.743 20.220 -23.550 31.567 hybrid contribution 0.598 -0.254 0.499 0.820 sum -5.144 19.966 -23.051 30.927 Atomic orbital electron populations 1.21908 0.92348 1.03209 1.03446 1.19909 0.97002 0.95913 0.89434 1.21906 1.01944 0.93565 1.03445 1.26438 0.93129 0.91292 0.84851 1.70632 1.16684 1.12602 1.20952 1.19402 1.01352 0.97854 0.88455 1.19843 1.01055 0.98107 0.92326 1.17377 0.96343 0.89236 0.90942 1.43192 1.28952 1.34477 1.23039 1.20807 0.86075 0.82566 0.81097 1.90773 1.22069 1.60240 1.64014 1.19636 0.86360 0.83297 0.83418 1.90738 1.23347 1.61981 1.65415 1.46126 1.25046 1.39888 1.20102 1.19737 0.91154 0.86430 0.93073 1.21041 1.08640 1.24944 1.04126 0.89880 1.24781 0.97715 0.95578 0.94378 1.69876 1.39015 1.31059 1.12436 0.86823 0.83966 0.78984 0.79944 1.19733 1.20739 1.18488 1.21089 0.96817 0.91755 1.01365 1.19724 1.00915 0.99677 0.88684 1.20323 0.99606 0.92442 0.93261 1.84458 1.61241 1.47833 1.16582 0.91563 0.90549 0.91759 0.86539 0.91795 0.90556 0.91576 0.83990 0.73553 0.75326 0.94820 0.95267 0.92092 0.82698 0.84043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.17 37.16 0.34 -0.37 16 2 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 3 C -0.15 -0.67 9.18 37.16 0.34 -0.33 16 4 C 0.25 2.57 6.74 -13.09 -0.09 2.48 16 5 N -0.48 -5.92 11.34 -8.71 -0.10 -6.02 16 6 C 0.04 0.53 7.23 -84.72 -0.61 -0.09 16 7 C -0.09 -1.07 10.00 -39.06 -0.39 -1.46 16 8 C 0.16 1.91 6.27 -83.73 -0.52 1.38 16 9 N -0.65 -8.10 5.32 -10.30 -0.05 -8.16 16 10 C 0.51 7.84 7.62 -11.64 -0.09 7.75 16 11 O -0.50 -8.25 14.15 5.46 0.08 -8.17 16 12 C 0.49 8.98 7.89 -11.63 -0.09 8.89 16 13 O -0.54 -10.65 16.48 5.49 0.09 -10.56 16 14 N -0.66 -13.22 5.54 -61.95 -0.34 -13.57 16 15 C 0.22 5.09 4.50 -5.20 -0.02 5.07 16 16 C -0.55 -14.70 9.83 -34.44 -0.34 -15.04 16 17 H 0.08 2.34 7.84 -52.49 -0.41 1.93 16 18 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 19 N -0.89 -25.83 13.96 55.43 0.77 -25.05 16 20 Si 0.88 20.60 27.47 -169.99 -4.67 15.93 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 24 C -0.09 -1.07 8.63 -39.33 -0.34 -1.41 16 25 C -0.07 -0.76 10.05 -39.57 -0.40 -1.16 16 26 C -0.01 -0.07 7.43 -38.62 -0.29 -0.36 16 27 O -0.21 -2.34 10.77 3.44 0.04 -2.30 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.43 4.60 8.29 -40.82 -0.34 4.26 16 37 H 0.41 7.77 7.79 -40.82 -0.32 7.45 16 38 H 0.03 0.82 7.20 -51.93 -0.37 0.44 16 39 H 0.03 0.70 7.57 -51.93 -0.39 0.30 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.16 1.88 6.40 -52.49 -0.34 1.54 16 42 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 365.70 15.07 5.51 5.51 Total: -1.00 -32.20 365.70 -6.73 -38.93 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -5.14 Total: 6.35 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -2.91 Total: 7.13 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.28 Total: -52.80 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: 0.20 Total: -21.04 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.20 -6.73 -38.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787600396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.206 kcal (2) G-P(sol) polarization free energy of solvation -32.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds