Wall clock time and date at job start Tue Mar 31 2020 16:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47149 * 2 1 4 4 C 1.50699 * 109.46918 * 119.99443 * 2 1 3 5 5 N 1.29918 * 124.85189 * 120.01772 * 4 2 1 6 6 C 1.36074 * 108.80577 * 179.97438 * 5 4 2 7 7 C 1.39525 * 133.72738 * 180.02562 * 6 5 4 8 8 C 1.38359 * 119.66605 * 179.97438 * 7 6 5 9 9 N 1.39865 * 119.86974 * 180.02562 * 8 7 6 10 10 C 1.34770 * 120.00414 * 213.48256 * 9 8 7 11 11 O 1.21390 * 119.99489 * 5.28468 * 10 9 8 12 12 C 1.49343 * 120.00359 * 185.28128 * 10 9 8 13 13 O 1.21353 * 119.99986 * 0.02562 * 12 10 9 14 14 N 1.34783 * 119.99861 * 180.02562 * 12 10 9 15 15 C 1.46497 * 119.99533 * 179.97438 * 14 12 10 16 16 C 1.50699 * 109.46873 * 179.97438 * 15 14 12 17 17 H 1.07996 * 120.00205 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99877 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99622 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00273 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46959 * 89.99856 * 20 18 16 22 22 H 1.48500 * 109.47116 * 210.00277 * 20 18 16 23 23 H 1.48503 * 109.46622 * 330.00170 * 20 18 16 24 24 C 1.39351 * 120.25904 * 0.02562 * 8 7 6 25 25 C 1.37794 * 120.40072 * 0.25113 * 24 8 7 26 26 C 1.38720 * 119.97764 * 359.49327 * 25 24 8 27 27 O 1.34212 * 124.85313 * 299.97459 * 4 2 1 28 28 H 1.08998 * 109.47607 * 300.00518 * 1 2 3 29 29 H 1.08998 * 109.47030 * 60.00717 * 1 2 3 30 30 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47607 * 239.99481 * 2 1 3 32 32 H 1.09000 * 109.46898 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46570 * 299.99566 * 3 2 1 34 34 H 1.08998 * 109.47290 * 59.99287 * 3 2 1 35 35 H 1.07997 * 120.16635 * 359.97438 * 7 6 5 36 36 H 0.97008 * 119.99818 * 33.48467 * 9 8 7 37 37 H 0.96995 * 120.00289 * 0.02562 * 14 12 10 38 38 H 1.08997 * 109.47576 * 299.99901 * 15 14 12 39 39 H 1.09003 * 109.47465 * 60.00079 * 15 14 12 40 40 H 0.97003 * 119.99532 * 179.97438 * 19 18 16 41 41 H 1.07995 * 119.80073 * 179.97438 * 24 8 7 42 42 H 1.08001 * 120.01089 * 179.71878 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0322 -0.7103 1.2305 5 7 2.7826 -1.7709 1.2213 6 6 3.0415 -2.1362 2.5063 7 6 3.7752 -3.1722 3.0852 8 6 3.8476 -3.2731 4.4632 9 7 4.5823 -4.3096 5.0480 10 6 4.1760 -4.8489 6.2144 11 8 3.1228 -4.5027 6.7088 12 6 5.0214 -5.8724 6.8986 13 8 6.0745 -6.2182 6.4045 14 7 4.6147 -6.4120 8.0648 15 6 5.4438 -7.4164 8.7356 16 6 4.7692 -7.8548 10.0099 17 1 3.8183 -7.4277 10.2920 18 6 5.3666 -8.8005 10.8160 19 7 4.7781 -9.1827 11.9284 20 14 7.0124 -9.5378 10.3291 21 1 8.1106 -8.7177 10.9006 22 1 7.1073 -10.9249 10.8509 23 1 7.1277 -9.5568 8.8487 24 6 3.1913 -2.3462 5.2706 25 6 2.4602 -1.3237 4.7060 26 6 2.3831 -1.2068 3.3259 27 8 1.7691 -0.3372 2.4926 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 4.2840 -3.8916 2.4608 36 1 5.3844 -4.6404 4.6141 37 1 3.7729 -6.1359 8.4596 38 1 5.5751 -8.2765 8.0791 39 1 6.4176 -6.9862 8.9699 40 1 5.1982 -9.8483 12.4953 41 1 3.2525 -2.4322 6.3454 42 1 1.9504 -0.6114 5.3378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787600396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:53 Heat of formation + Delta-G solvation = -58.518325 kcal Electronic energy + Delta-G solvation = -26508.297319 eV Core-core repulsion = 22453.928997 eV Total energy + Delta-G solvation = -4054.368322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.39821 -42.13926 -40.24020 -38.88040 -36.82488 -36.57073 -35.91497 -35.15937 -34.41899 -31.46324 -30.52124 -29.97575 -28.13070 -26.59551 -25.29703 -24.42114 -23.34392 -23.10303 -21.91953 -21.38728 -20.30209 -19.48373 -18.67386 -18.43863 -17.87334 -17.52993 -17.48387 -16.98912 -16.74614 -16.20222 -15.99806 -15.71885 -15.30563 -15.10651 -15.00839 -14.92147 -14.44097 -14.37000 -14.24672 -14.09582 -13.75137 -13.13764 -13.08504 -12.96391 -12.77258 -12.69975 -12.66565 -12.61875 -12.18106 -12.01080 -11.91935 -11.71854 -11.69612 -11.47393 -10.92961 -10.83516 -10.19363 -9.64348 -9.39077 -8.39461 -6.48914 -0.47390 -0.28937 0.38689 1.08858 1.27645 1.36774 1.37671 1.39699 1.50071 1.98507 2.28991 2.44955 2.46312 2.72985 2.95680 3.32698 3.35197 3.72965 3.81322 3.86945 4.00871 4.01931 4.14710 4.25239 4.47061 4.65292 4.74146 4.74721 4.83181 4.88173 4.89785 4.93331 4.96110 4.97977 5.05067 5.12976 5.13244 5.24006 5.28515 5.30206 5.45070 5.76860 6.03134 6.38774 6.46117 6.50829 6.63475 6.87324 7.17595 8.75337 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.041908 B = 0.001862 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.966493 B =15031.973675 C =15383.171054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.004 4.004 3 C -0.147 4.147 4 C 0.263 3.737 5 N -0.508 5.508 6 C 0.023 3.977 7 C -0.090 4.090 8 C 0.147 3.853 9 N -0.631 5.631 10 C 0.523 3.477 11 O -0.511 6.511 12 C 0.501 3.499 13 O -0.549 6.549 14 N -0.670 5.670 15 C 0.228 3.772 16 C -0.555 4.555 17 H 0.055 0.945 18 C 0.026 3.974 19 N -0.931 5.931 20 Si 0.942 3.058 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.251 1.251 24 C -0.100 4.100 25 C -0.063 4.063 26 C -0.019 4.019 27 O -0.212 6.212 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.127 0.873 32 H 0.056 0.944 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.156 0.844 36 H 0.435 0.565 37 H 0.415 0.585 38 H 0.031 0.969 39 H 0.030 0.970 40 H 0.273 0.727 41 H 0.153 0.847 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.635 22.023 -25.521 34.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 C -0.205 4.205 4 C 0.051 3.949 5 N -0.237 5.237 6 C -0.089 4.089 7 C -0.111 4.111 8 C 0.052 3.948 9 N -0.279 5.279 10 C 0.305 3.695 11 O -0.385 6.385 12 C 0.281 3.719 13 O -0.429 6.429 14 N -0.320 5.320 15 C 0.106 3.894 16 C -0.593 4.593 17 H 0.073 0.927 18 C -0.175 4.175 19 N -0.569 5.569 20 Si 0.765 3.235 21 H -0.188 1.188 22 H -0.201 1.201 23 H -0.175 1.175 24 C -0.119 4.119 25 C -0.082 4.082 26 C -0.069 4.069 27 O -0.104 6.104 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.174 0.826 36 H 0.275 0.725 37 H 0.251 0.749 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.170 0.830 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.371 21.525 -25.786 34.016 hybrid contribution 0.382 -0.524 1.072 1.253 sum -4.989 21.001 -24.714 32.813 Atomic orbital electron populations 1.21916 0.91179 1.02925 1.04550 1.20240 0.97851 0.96498 0.87771 1.21912 1.01481 0.92534 1.04537 1.27414 0.91520 0.90506 0.85439 1.70645 1.18262 1.13954 1.20879 1.19686 1.01790 0.98371 0.89017 1.19937 1.00798 0.98158 0.92208 1.17417 0.96943 0.89257 0.91204 1.42980 1.29034 1.34029 1.21848 1.20095 0.85466 0.82133 0.81769 1.90782 1.22449 1.60657 1.64657 1.19965 0.86241 0.83145 0.82595 1.90727 1.24084 1.62478 1.65600 1.45948 1.25084 1.39966 1.20964 1.19394 0.91195 0.87158 0.91696 1.21258 1.07841 1.24706 1.05499 0.92665 1.25660 1.01520 0.96071 0.94232 1.69998 1.41007 1.32127 1.13813 0.85793 0.79348 0.78324 0.80070 1.18760 1.20127 1.17482 1.21132 0.97291 0.92258 1.01256 1.19940 1.00142 0.99547 0.88569 1.20562 0.99894 0.92673 0.93815 1.84472 1.61220 1.47733 1.16989 0.92023 0.87898 0.92724 0.85467 0.92517 0.87947 0.92009 0.82593 0.72508 0.74884 0.95139 0.95168 0.91774 0.82980 0.81636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.17 71.98 0.66 -0.42 16 2 C 0.00 -0.04 3.39 -11.54 -0.04 -0.08 16 3 C -0.15 -0.99 9.18 71.98 0.66 -0.33 16 4 C 0.26 5.03 6.74 88.39 0.60 5.62 16 5 N -0.51 -12.19 11.34 -296.31 -3.36 -15.55 16 6 C 0.02 0.57 7.23 39.30 0.28 0.85 16 7 C -0.09 -2.01 10.00 22.61 0.23 -1.79 16 8 C 0.15 3.43 6.27 38.16 0.24 3.66 16 9 N -0.63 -15.01 5.32 -304.84 -1.62 -16.63 16 10 C 0.52 15.57 7.62 87.24 0.66 16.23 16 11 O -0.51 -16.60 14.15 -3.37 -0.05 -16.65 16 12 C 0.50 17.76 7.89 87.23 0.69 18.45 16 13 O -0.55 -21.14 16.48 -3.26 -0.05 -21.20 16 14 N -0.67 -26.60 5.54 -468.26 -2.59 -29.20 16 15 C 0.23 10.59 4.50 85.63 0.38 10.97 16 16 C -0.56 -30.11 9.83 25.60 0.25 -29.86 16 17 H 0.06 3.22 7.84 -2.91 -0.02 3.20 16 18 C 0.03 1.42 5.47 84.65 0.46 1.88 16 19 N -0.93 -55.05 13.96 21.45 0.30 -54.75 16 20 Si 0.94 42.08 27.47 68.60 1.88 43.96 16 21 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 24 C -0.10 -2.27 8.63 22.43 0.19 -2.08 16 25 C -0.06 -1.29 10.05 22.28 0.22 -1.06 16 26 C -0.02 -0.44 7.43 22.89 0.17 -0.27 16 27 O -0.21 -4.53 10.77 -10.60 -0.11 -4.64 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.06 0.48 8.14 -2.39 -0.02 0.47 16 35 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 36 H 0.43 8.76 8.29 -92.70 -0.77 7.99 16 37 H 0.41 15.84 7.79 -92.71 -0.72 15.12 16 38 H 0.03 1.45 7.20 -2.39 -0.02 1.43 16 39 H 0.03 1.41 7.57 -2.39 -0.02 1.39 16 40 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 41 H 0.15 3.57 6.40 -2.91 -0.02 3.55 16 42 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -68.93 365.70 -0.40 -69.33 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -0.46 Total: 23.54 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: 5.67 Total: 21.78 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -7.28 Total: -116.13 kcal Atomic # 8 Polarization: -42.27 SS G_CDS: -0.22 Total: -42.49 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.88 Total: 43.96 kcal Total: -68.93 -0.40 -69.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787600396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.811 kcal (2) G-P(sol) polarization free energy of solvation -68.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds