Wall clock time and date at job start Tue Mar 31 2020 16:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47031 * 2 1 4 4 N 1.46503 * 109.47054 * 180.02562 * 3 2 1 5 5 N 1.40448 * 126.82110 * 89.97506 * 4 3 2 6 6 C 1.30719 * 106.79180 * 180.02562 * 5 4 3 7 7 N 1.33239 * 108.94633 * 0.02562 * 6 5 4 8 8 C 1.30838 * 109.82922 * 359.97438 * 7 6 5 9 9 C 1.50703 * 125.96118 * 180.02562 * 8 7 6 10 10 O 1.45199 * 109.46985 * 269.96012 * 9 8 7 11 11 C 1.34761 * 116.99904 * 180.02562 * 10 9 8 12 12 O 1.21513 * 119.99828 * 359.97438 * 11 10 9 13 13 C 1.47396 * 120.00224 * 179.97438 * 11 10 9 14 14 C 1.39734 * 120.19970 * 359.97438 * 13 11 10 15 15 C 1.37800 * 119.90909 * 180.02562 * 14 13 11 16 16 C 1.38588 * 120.33382 * 0.02562 * 15 14 13 17 17 C 1.38022 * 120.41458 * 0.02562 * 16 15 14 18 18 C 1.38835 * 120.07533 * 359.68235 * 17 16 15 19 19 O 1.35505 * 120.16093 * 180.31676 * 18 17 16 20 20 C 1.34804 * 117.00621 * 354.39813 * 19 18 17 21 21 H 1.08002 * 120.00124 * 5.04617 * 20 19 18 22 22 C 1.38700 * 120.00331 * 185.05562 * 20 19 18 23 23 N 1.31520 * 120.00082 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99898 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47162 * 90.00014 * 24 22 20 26 26 H 1.48503 * 109.47111 * 210.00225 * 24 22 20 27 27 H 1.48497 * 109.46830 * 329.99698 * 24 22 20 28 28 H 1.09000 * 109.46989 * 299.99740 * 1 2 3 29 29 H 1.08994 * 109.47088 * 59.99808 * 1 2 3 30 30 H 1.08998 * 109.47050 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46902 * 239.99774 * 2 1 3 32 32 H 1.08994 * 109.47088 * 120.00192 * 2 1 3 33 33 H 1.08996 * 109.47731 * 60.00180 * 3 2 1 34 34 H 1.09010 * 109.47518 * 299.99879 * 3 2 1 35 35 H 1.07993 * 125.52663 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.47008 * 29.96155 * 9 8 7 37 37 H 1.08994 * 109.46732 * 149.95911 * 9 8 7 38 38 H 1.07998 * 120.04460 * 359.97438 * 14 13 11 39 39 H 1.07998 * 119.83144 * 179.97438 * 15 14 13 40 40 H 1.08008 * 119.79221 * 180.02562 * 16 15 14 41 41 H 1.08001 * 119.95734 * 179.97438 * 17 16 15 42 42 H 0.97001 * 119.99745 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 7 4.3463 1.4421 -1.1253 6 6 5.5746 1.4417 -0.6781 7 7 5.5500 1.4412 0.6541 8 6 4.3112 1.4418 1.0751 9 6 3.8658 1.4420 2.5148 10 8 3.7212 0.0731 2.9769 11 6 3.3256 -0.1032 4.2530 12 8 3.1080 0.8606 4.9603 13 6 3.1569 -1.4651 4.7908 14 6 3.4055 -2.5764 3.9810 15 6 3.2454 -3.8470 4.4898 16 6 2.8381 -4.0293 5.8019 17 6 2.5878 -2.9414 6.6134 18 6 2.7495 -1.6537 6.1203 19 8 2.5104 -0.5843 6.9174 20 6 2.0069 -0.8345 8.1426 21 1 1.8886 -1.8536 8.4800 22 6 1.6405 0.2167 8.9698 23 7 1.1487 -0.0275 10.1649 24 14 1.8455 1.9795 8.3865 25 1 0.6073 2.4190 7.6945 26 1 2.0994 2.8610 9.5543 27 1 2.9928 2.0596 7.4471 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6768 1.9563 0.8899 34 1 1.6767 1.9564 -0.8901 35 1 6.4650 1.4410 -1.2893 36 1 4.6092 1.9549 3.1250 37 1 2.9088 1.9570 2.5989 38 1 3.7219 -2.4397 2.9575 39 1 3.4374 -4.7050 3.8626 40 1 2.7158 -5.0291 6.1918 41 1 2.2703 -3.0920 7.6347 42 1 0.8921 0.7078 10.7433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789690625.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:02 Heat of formation + Delta-G solvation = 6.559966 kcal Electronic energy + Delta-G solvation = -28075.384614 eV Core-core repulsion = 24023.838298 eV Total energy + Delta-G solvation = -4051.546316 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.36019 -40.17684 -38.97490 -36.70339 -36.18531 -35.88797 -32.59626 -32.35701 -32.22651 -30.85640 -29.33735 -27.94060 -26.64574 -25.46552 -23.67962 -22.70364 -21.88396 -21.65946 -20.67572 -20.43763 -18.10005 -17.96485 -17.42116 -17.02757 -16.26207 -16.09090 -15.66599 -15.54849 -14.92292 -14.78134 -14.49603 -14.11877 -14.09283 -13.84226 -13.72317 -13.50292 -13.15969 -12.75921 -12.62995 -12.47889 -12.36603 -12.26372 -11.92406 -11.78997 -11.52462 -11.38238 -11.10977 -10.92346 -10.83216 -10.58477 -10.21848 -10.19322 -10.11115 -9.93677 -9.81250 -9.48215 -9.01524 -8.53424 -7.63322 -6.60005 -4.25408 1.17797 1.34014 1.98407 2.09986 2.53295 3.11275 3.15337 3.22413 3.27067 3.53306 3.88972 4.15345 4.22209 4.34139 4.43871 4.51946 4.57753 4.64844 4.82018 4.95080 4.96187 5.05850 5.14138 5.30520 5.32789 5.38442 5.38925 5.59702 5.69870 5.76498 5.83167 5.91409 5.94292 6.05870 6.20789 6.26851 6.44527 6.47920 6.59989 6.75294 6.95431 7.04712 7.36666 7.56800 7.81067 7.86330 8.28991 8.73984 9.33993 10.44624 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.012126 B = 0.003657 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.574856 B = 7654.063552 C = 8472.048565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.141 4.141 3 C 0.123 3.877 4 N -0.362 5.362 5 N -0.315 5.315 6 C 0.198 3.802 7 N -0.523 5.523 8 C 0.281 3.719 9 C 0.148 3.852 10 O -0.356 6.356 11 C 0.510 3.490 12 O -0.489 6.489 13 C -0.216 4.216 14 C -0.016 4.016 15 C -0.225 4.225 16 C -0.041 4.041 17 C -0.227 4.227 18 C 0.204 3.796 19 O -0.165 6.165 20 C -0.397 4.397 21 H 0.111 0.889 22 C 0.073 3.927 23 N -0.863 5.863 24 Si 0.900 3.100 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.239 1.239 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.220 0.780 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.125 0.875 39 H 0.115 0.885 40 H 0.117 0.883 41 H 0.142 0.858 42 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -0.291 -18.812 18.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.001 3.999 4 N -0.153 5.153 5 N -0.143 5.143 6 C -0.105 4.105 7 N -0.252 5.252 8 C 0.004 3.996 9 C 0.071 3.929 10 O -0.273 6.273 11 C 0.357 3.643 12 O -0.376 6.376 13 C -0.219 4.219 14 C -0.035 4.035 15 C -0.243 4.243 16 C -0.060 4.060 17 C -0.246 4.246 18 C 0.147 3.853 19 O -0.065 6.065 20 C -0.471 4.471 21 H 0.128 0.872 22 C -0.133 4.133 23 N -0.498 5.498 24 Si 0.724 3.276 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.162 1.162 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.236 0.764 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.143 0.857 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.159 0.841 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.318 0.410 -18.919 18.969 hybrid contribution -0.115 0.703 0.086 0.717 sum 1.203 1.112 -18.833 18.904 Atomic orbital electron populations 1.21690 0.93873 1.02911 1.02218 1.21939 0.97091 0.94906 1.04052 1.22027 0.73243 0.99616 1.04965 1.50480 1.07945 1.53199 1.03715 1.78046 1.02136 1.25994 1.08114 1.25996 0.95831 0.98434 0.90248 1.70493 1.19348 1.23688 1.11656 1.23687 0.86420 0.97923 0.91547 1.20896 1.02940 0.83553 0.85491 1.86575 1.80804 1.28612 1.31346 1.21103 0.74222 0.90555 0.78458 1.90937 1.46875 1.41895 1.57937 1.17939 1.21396 0.89506 0.93038 1.20951 0.93183 0.91306 0.98038 1.20617 1.10828 0.96339 0.96562 1.21053 0.93572 0.98006 0.93336 1.21243 1.09886 0.91261 1.02236 1.18946 0.90980 0.87366 0.88055 1.83734 1.67976 1.29399 1.25366 1.20950 1.41264 0.96988 0.87926 0.87168 1.24517 0.94247 1.00352 0.94219 1.69630 1.38352 1.34309 1.07520 0.86214 0.81290 0.81367 0.78740 1.19804 1.20971 1.16223 0.92013 0.92403 0.91594 0.90947 0.90287 0.88310 0.88158 0.76377 0.87378 0.89068 0.85738 0.86695 0.86533 0.84092 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.14 -1.27 6.26 -26.73 -0.17 -1.44 16 3 C 0.12 1.10 6.30 -4.04 -0.03 1.08 16 4 N -0.36 -4.35 3.64 -58.34 -0.21 -4.56 16 5 N -0.31 -3.95 12.70 29.29 0.37 -3.58 16 6 C 0.20 2.33 13.03 -91.81 -1.20 1.13 16 7 N -0.52 -7.41 11.19 -11.97 -0.13 -7.54 16 8 C 0.28 3.79 7.62 -155.69 -1.19 2.60 16 9 C 0.15 2.04 5.79 36.01 0.21 2.25 16 10 O -0.36 -5.76 9.45 -40.66 -0.38 -6.14 16 11 C 0.51 10.00 7.89 34.46 0.27 10.27 16 12 O -0.49 -11.12 14.96 -26.59 -0.40 -11.52 16 13 C -0.22 -4.28 5.89 -104.83 -0.62 -4.90 16 14 C -0.02 -0.27 9.61 -39.18 -0.38 -0.65 16 15 C -0.22 -3.41 10.02 -39.61 -0.40 -3.81 16 16 C -0.04 -0.67 10.03 -39.53 -0.40 -1.06 16 17 C -0.23 -4.54 9.16 -39.44 -0.36 -4.90 16 18 C 0.20 4.59 6.66 -38.58 -0.26 4.33 16 19 O -0.16 -4.29 6.67 -20.98 -0.14 -4.43 16 20 C -0.40 -10.79 9.95 30.90 0.31 -10.48 16 21 H 0.11 2.98 5.44 -52.49 -0.29 2.70 16 22 C 0.07 2.01 5.49 -17.51 -0.10 1.91 16 23 N -0.86 -24.07 13.96 55.48 0.77 -23.30 16 24 Si 0.90 21.93 28.62 -169.99 -4.86 17.07 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.24 -6.10 7.11 56.52 0.40 -5.70 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.76 7.11 -51.93 -0.37 0.39 16 34 H 0.10 0.75 8.14 -51.92 -0.42 0.32 16 35 H 0.22 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.11 1.51 8.14 -51.93 -0.42 1.08 16 37 H 0.09 1.09 7.12 -51.93 -0.37 0.72 16 38 H 0.12 1.78 7.61 -52.49 -0.40 1.38 16 39 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 41 H 0.14 2.90 5.64 -52.49 -0.30 2.60 16 42 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -32.29 368.51 -8.44 -40.73 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -5.08 Total: 2.13 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -3.92 Total: -4.41 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.80 Total: -38.98 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.92 Total: -22.10 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.86 Total: 17.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.29 -8.44 -40.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789690625.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.288 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds