Wall clock time and date at job start Tue Mar 31 2020 16:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 109.47031 * 2 1 4 4 N 1.46503 * 109.47054 * 180.02562 * 3 2 1 5 5 N 1.40448 * 126.82110 * 89.97506 * 4 3 2 6 6 C 1.30719 * 106.79180 * 180.02562 * 5 4 3 7 7 N 1.33239 * 108.94633 * 0.02562 * 6 5 4 8 8 C 1.30838 * 109.82922 * 359.97438 * 7 6 5 9 9 C 1.50703 * 125.96118 * 180.02562 * 8 7 6 10 10 O 1.45199 * 109.46985 * 269.96012 * 9 8 7 11 11 C 1.34761 * 116.99904 * 180.02562 * 10 9 8 12 12 O 1.21513 * 119.99828 * 359.97438 * 11 10 9 13 13 C 1.47396 * 120.00224 * 179.97438 * 11 10 9 14 14 C 1.39734 * 120.19970 * 359.97438 * 13 11 10 15 15 C 1.37800 * 119.90909 * 180.02562 * 14 13 11 16 16 C 1.38588 * 120.33382 * 0.02562 * 15 14 13 17 17 C 1.38022 * 120.41458 * 0.02562 * 16 15 14 18 18 C 1.38835 * 120.07533 * 359.68235 * 17 16 15 19 19 O 1.35505 * 120.16093 * 180.31676 * 18 17 16 20 20 C 1.34804 * 117.00621 * 354.39813 * 19 18 17 21 21 H 1.08002 * 120.00124 * 5.04617 * 20 19 18 22 22 C 1.38700 * 120.00331 * 185.05562 * 20 19 18 23 23 N 1.31520 * 120.00082 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99898 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47162 * 90.00014 * 24 22 20 26 26 H 1.48503 * 109.47111 * 210.00225 * 24 22 20 27 27 H 1.48497 * 109.46830 * 329.99698 * 24 22 20 28 28 H 1.09000 * 109.46989 * 299.99740 * 1 2 3 29 29 H 1.08994 * 109.47088 * 59.99808 * 1 2 3 30 30 H 1.08998 * 109.47050 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46902 * 239.99774 * 2 1 3 32 32 H 1.08994 * 109.47088 * 120.00192 * 2 1 3 33 33 H 1.08996 * 109.47731 * 60.00180 * 3 2 1 34 34 H 1.09010 * 109.47518 * 299.99879 * 3 2 1 35 35 H 1.07993 * 125.52663 * 179.97438 * 6 5 4 36 36 H 1.08996 * 109.47008 * 29.96155 * 9 8 7 37 37 H 1.08994 * 109.46732 * 149.95911 * 9 8 7 38 38 H 1.07998 * 120.04460 * 359.97438 * 14 13 11 39 39 H 1.07998 * 119.83144 * 179.97438 * 15 14 13 40 40 H 1.08008 * 119.79221 * 180.02562 * 16 15 14 41 41 H 1.08001 * 119.95734 * 179.97438 * 17 16 15 42 42 H 0.97001 * 119.99745 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 7 4.3463 1.4421 -1.1253 6 6 5.5746 1.4417 -0.6781 7 7 5.5500 1.4412 0.6541 8 6 4.3112 1.4418 1.0751 9 6 3.8658 1.4420 2.5148 10 8 3.7212 0.0731 2.9769 11 6 3.3256 -0.1032 4.2530 12 8 3.1080 0.8606 4.9603 13 6 3.1569 -1.4651 4.7908 14 6 3.4055 -2.5764 3.9810 15 6 3.2454 -3.8470 4.4898 16 6 2.8381 -4.0293 5.8019 17 6 2.5878 -2.9414 6.6134 18 6 2.7495 -1.6537 6.1203 19 8 2.5104 -0.5843 6.9174 20 6 2.0069 -0.8345 8.1426 21 1 1.8886 -1.8536 8.4800 22 6 1.6405 0.2167 8.9698 23 7 1.1487 -0.0275 10.1649 24 14 1.8455 1.9795 8.3865 25 1 0.6073 2.4190 7.6945 26 1 2.0994 2.8610 9.5543 27 1 2.9928 2.0596 7.4471 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6768 1.9563 0.8899 34 1 1.6767 1.9564 -0.8901 35 1 6.4650 1.4410 -1.2893 36 1 4.6092 1.9549 3.1250 37 1 2.9088 1.9570 2.5989 38 1 3.7219 -2.4397 2.9575 39 1 3.4374 -4.7050 3.8626 40 1 2.7158 -5.0291 6.1918 41 1 2.2703 -3.0920 7.6347 42 1 0.8921 0.7078 10.7433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789690625.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:01 Heat of formation + Delta-G solvation = -10.376623 kcal Electronic energy + Delta-G solvation = -28076.119039 eV Core-core repulsion = 24023.838298 eV Total energy + Delta-G solvation = -4052.280741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.31754 -41.71198 -40.55789 -38.29010 -37.55240 -36.79414 -34.54696 -33.38843 -33.10817 -32.28652 -30.88046 -29.01612 -27.52058 -27.27248 -25.13194 -23.51274 -23.26012 -22.70942 -22.07740 -21.48560 -19.91956 -19.50190 -18.58978 -18.40916 -17.66516 -17.37111 -16.76885 -16.48586 -16.36953 -16.04052 -15.78985 -15.70428 -15.48782 -15.39851 -14.86770 -14.48590 -14.36972 -14.32797 -14.08952 -13.81241 -13.65372 -13.17209 -13.14054 -12.89657 -12.78990 -12.61485 -12.45982 -12.43049 -12.03915 -11.94677 -11.77505 -11.72710 -11.28033 -11.19845 -10.97718 -10.90998 -10.73914 -10.00060 -9.24101 -8.58772 -6.29048 -0.15481 0.15193 0.60048 1.08465 1.28139 1.31497 1.46572 1.57736 1.61026 2.01183 2.28262 2.71725 2.83116 2.91240 3.07505 3.35200 3.53959 3.76066 3.80196 3.86604 3.99761 4.07716 4.15017 4.19052 4.23200 4.43828 4.44379 4.50028 4.52422 4.73697 4.74838 5.01525 5.03119 5.06894 5.13907 5.18742 5.25468 5.29709 5.35475 5.46017 5.56996 5.58531 5.67545 5.80296 6.09004 6.74154 6.79505 6.91350 7.49967 8.50949 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.012126 B = 0.003657 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.574856 B = 7654.063552 C = 8472.048565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.115 3.885 4 N -0.357 5.357 5 N -0.326 5.326 6 C 0.197 3.803 7 N -0.549 5.549 8 C 0.270 3.730 9 C 0.147 3.853 10 O -0.345 6.345 11 C 0.516 3.484 12 O -0.525 6.525 13 C -0.223 4.223 14 C -0.012 4.012 15 C -0.194 4.194 16 C -0.027 4.027 17 C -0.248 4.248 18 C 0.175 3.825 19 O -0.205 6.205 20 C -0.404 4.404 21 H 0.096 0.904 22 C 0.029 3.971 23 N -0.907 5.907 24 Si 0.952 3.048 25 H -0.271 1.271 26 H -0.268 1.268 27 H -0.261 1.261 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.119 0.881 35 H 0.255 0.745 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.157 0.843 41 H 0.124 0.876 42 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 -1.818 -22.384 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.006 4.006 4 N -0.149 5.149 5 N -0.154 5.154 6 C -0.104 4.104 7 N -0.279 5.279 8 C -0.007 4.007 9 C 0.070 3.930 10 O -0.261 6.261 11 C 0.363 3.637 12 O -0.414 6.414 13 C -0.226 4.226 14 C -0.030 4.030 15 C -0.212 4.212 16 C -0.045 4.045 17 C -0.267 4.267 18 C 0.121 3.879 19 O -0.109 6.109 20 C -0.480 4.480 21 H 0.113 0.887 22 C -0.173 4.173 23 N -0.546 5.546 24 Si 0.775 3.225 25 H -0.196 1.196 26 H -0.193 1.193 27 H -0.186 1.186 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.137 0.863 35 H 0.270 0.730 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.172 0.828 39 H 0.182 0.818 40 H 0.175 0.825 41 H 0.142 0.858 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.876 -1.155 -22.550 22.657 hybrid contribution -0.147 0.877 0.741 1.158 sum 1.728 -0.277 -21.809 21.879 Atomic orbital electron populations 1.21675 0.92596 1.03173 1.02915 1.21852 0.98075 0.94531 1.02769 1.22339 0.71738 1.00014 1.06505 1.50674 1.08829 1.52212 1.03163 1.78028 1.02573 1.26378 1.08447 1.26712 0.96774 0.97247 0.89712 1.70477 1.19917 1.24433 1.13035 1.23471 0.86814 0.98948 0.91419 1.21044 1.03872 0.82175 0.85885 1.86530 1.79928 1.30333 1.29358 1.21132 0.73321 0.90174 0.79033 1.90930 1.48338 1.43032 1.59146 1.18325 1.20694 0.91019 0.92522 1.21351 0.92054 0.90726 0.98854 1.21239 1.06515 0.97301 0.96149 1.21534 0.91058 0.98571 0.93326 1.21326 1.11239 0.91747 1.02398 1.19585 0.91390 0.87877 0.89014 1.83719 1.71222 1.30710 1.25219 1.20899 1.41684 0.96455 0.88982 0.88656 1.25065 0.94743 1.02936 0.94516 1.69678 1.41365 1.35028 1.08533 0.85461 0.80135 0.78739 0.78135 1.19606 1.19279 1.18558 0.92250 0.90794 0.91566 0.91371 0.92293 0.87185 0.86295 0.72972 0.87829 0.87378 0.82845 0.81766 0.82513 0.85814 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.12 16 2 C -0.13 -2.13 6.26 30.59 0.19 -1.94 16 3 C 0.11 1.81 6.30 86.38 0.54 2.35 16 4 N -0.36 -7.90 3.64 -338.48 -1.23 -9.13 16 5 N -0.33 -7.47 12.70 -61.25 -0.78 -8.25 16 6 C 0.20 4.21 13.03 180.76 2.36 6.56 16 7 N -0.55 -14.67 11.19 -191.77 -2.15 -16.82 16 8 C 0.27 6.89 7.62 138.23 1.05 7.94 16 9 C 0.15 3.92 5.79 71.24 0.41 4.33 16 10 O -0.35 -10.74 9.45 -56.72 -0.54 -11.27 16 11 C 0.52 20.09 7.89 70.23 0.55 20.64 16 12 O -0.52 -24.41 14.96 26.79 0.40 -24.01 16 13 C -0.22 -8.62 5.89 -20.00 -0.12 -8.73 16 14 C -0.01 -0.34 9.61 22.53 0.22 -0.12 16 15 C -0.19 -4.81 10.02 22.25 0.22 -4.59 16 16 C -0.03 -0.77 10.03 22.30 0.22 -0.55 16 17 C -0.25 -9.86 9.16 22.36 0.20 -9.65 16 18 C 0.17 7.98 6.66 22.92 0.15 8.13 16 19 O -0.21 -11.19 6.67 1.12 0.01 -11.18 16 20 C -0.40 -23.33 9.95 67.93 0.68 -22.65 16 21 H 0.10 5.55 5.44 -2.91 -0.02 5.53 16 22 C 0.03 1.65 5.49 84.85 0.47 2.11 16 23 N -0.91 -53.14 13.96 21.62 0.30 -52.83 16 24 Si 0.95 47.50 28.62 68.60 1.96 49.46 16 25 H -0.27 -13.15 7.11 99.48 0.71 -12.45 16 26 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 27 H -0.26 -13.82 7.11 99.48 0.71 -13.11 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.11 1.48 7.11 -2.39 -0.02 1.47 16 34 H 0.12 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.25 3.07 8.06 -2.91 -0.02 3.05 16 36 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 37 H 0.11 2.50 7.12 -2.39 -0.02 2.48 16 38 H 0.15 3.62 7.61 -2.91 -0.02 3.60 16 39 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 40 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 41 H 0.12 5.33 5.64 -2.91 -0.02 5.31 16 42 H 0.29 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -74.56 368.51 6.91 -67.65 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 1.06 Total: 13.67 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 7.87 Total: 2.71 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -3.85 Total: -87.03 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -0.13 Total: -46.47 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 1.96 Total: 49.46 kcal Total: -74.56 6.91 -67.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789690625.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.276 kcal (2) G-P(sol) polarization free energy of solvation -74.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds