Wall clock time and date at job start Tue Mar 31 2020 15:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39730 * 125.78380 * 2 1 4 4 C 1.36155 * 107.86146 * 180.12934 * 3 2 1 5 5 N 1.39360 * 126.26089 * 179.88015 * 4 3 2 6 6 C 1.34776 * 120.00289 * 359.68541 * 5 4 3 7 7 O 1.21711 * 119.99900 * 0.02562 * 6 5 4 8 8 C 1.46616 * 119.99891 * 180.02562 * 6 5 4 9 9 O 1.35394 * 126.11880 * 0.02562 * 8 6 5 10 10 C 1.34411 * 109.47429 * 179.97438 * 9 8 6 11 11 C 1.33814 * 108.59738 * 0.02562 * 10 9 8 12 12 C 1.35203 * 126.12011 * 179.97438 * 8 6 5 13 13 C 1.50721 * 130.57867 * 0.15083 * 12 8 6 14 14 C 1.53685 * 107.44408 * 164.22476 * 13 12 8 15 15 O 1.42894 * 109.98078 * 48.25239 * 14 13 12 16 16 C 1.43515 * 114.77628 * 287.65100 * 15 14 13 17 17 N 1.35805 * 107.46984 * 359.61424 * 4 3 2 18 18 C 1.46501 * 126.09622 * 180.22336 * 17 4 3 19 19 C 1.50702 * 109.47257 * 89.99502 * 18 17 4 20 20 H 1.08005 * 119.99962 * 0.02562 * 19 18 17 21 21 C 1.37872 * 119.99870 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00219 * 0.02562 * 21 19 18 23 23 Si 1.86809 * 120.00009 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46753 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47089 * 119.99878 * 23 21 19 26 26 H 1.48499 * 109.47024 * 240.00271 * 23 21 19 27 27 N 1.30838 * 125.77199 * 179.68952 * 2 1 3 28 28 H 1.09001 * 109.47271 * 270.28485 * 1 2 3 29 29 H 1.09005 * 109.46630 * 30.27694 * 1 2 3 30 30 H 1.08994 * 109.47497 * 150.27940 * 1 2 3 31 31 H 1.08001 * 126.06989 * 359.97438 * 3 2 1 32 32 H 0.97002 * 119.99341 * 179.68300 * 5 4 3 33 33 H 1.07998 * 125.71475 * 179.97438 * 10 9 8 34 34 H 1.08999 * 109.86829 * 44.74037 * 13 12 8 35 35 H 1.09006 * 109.85987 * 283.70690 * 13 12 8 36 36 H 1.08996 * 109.38165 * 288.09512 * 14 13 12 37 37 H 1.09002 * 109.30125 * 168.35150 * 14 13 12 38 38 H 1.09002 * 109.82657 * 171.05591 * 16 15 14 39 39 H 1.09002 * 109.82120 * 291.92365 * 16 15 14 40 40 H 1.08994 * 109.47466 * 210.00021 * 18 17 4 41 41 H 1.09001 * 109.46658 * 330.00140 * 18 17 4 42 42 H 0.97003 * 120.00401 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1335 0.0000 4 6 3.6195 0.7145 -0.0029 5 7 4.7496 1.5301 -0.0063 6 6 4.6130 2.8709 -0.0132 7 8 3.5027 3.3695 -0.0161 8 6 5.8020 3.7288 -0.0173 9 8 7.0891 3.3089 -0.0153 10 6 7.9082 4.3746 -0.0209 11 6 7.1626 5.4858 -0.0261 12 6 5.8092 5.0808 -0.0248 13 6 4.6697 6.0673 -0.0279 14 6 5.2458 7.4377 0.3620 15 8 6.4190 7.7108 -0.4067 16 6 7.5710 6.9367 -0.0414 17 7 3.6088 -0.6434 0.0040 18 6 4.7857 -1.5158 0.0085 19 6 5.1894 -1.8076 1.4308 20 1 4.6254 -1.3858 2.2496 21 6 6.2787 -2.6131 1.6868 22 7 6.9658 -3.1263 0.6898 23 14 6.7787 -2.9754 3.4499 24 1 5.8505 -2.2832 4.3797 25 1 6.7201 -4.4397 3.6901 26 1 8.1632 -2.4907 3.6813 27 7 2.2718 -1.0615 0.0058 28 1 -0.3634 0.0051 1.0276 29 1 -0.3633 0.8876 -0.5182 30 1 -0.3634 -0.8924 -0.5094 31 1 1.9877 2.1598 -0.0004 32 1 5.6344 1.1326 -0.0035 33 1 8.9876 4.3402 -0.0205 34 1 3.9146 5.7633 0.6970 35 1 4.2287 6.1206 -1.0233 36 1 5.5001 7.4350 1.4219 37 1 4.5003 8.2096 0.1707 38 1 8.3661 7.0902 -0.7711 39 1 7.9163 7.2328 0.9492 40 1 4.5477 -2.4498 -0.5005 41 1 5.6076 -1.0198 -0.5079 42 1 7.7324 -3.6927 0.8699 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795473365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:31 Heat of formation + Delta-G solvation = -6.532523 kcal Electronic energy + Delta-G solvation = -28015.950261 eV Core-core repulsion = 23963.836212 eV Total energy + Delta-G solvation = -4052.114048 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.99173 -42.42192 -40.49705 -39.54815 -36.43495 -35.73079 -34.66716 -33.87416 -33.12563 -31.21495 -30.57031 -29.50470 -27.84315 -27.22023 -25.49271 -24.69877 -24.17366 -22.25019 -21.45448 -20.75619 -20.56190 -19.06936 -18.87980 -18.22093 -17.74214 -17.34456 -17.09771 -16.72905 -16.57268 -16.21055 -16.15704 -15.88041 -15.58545 -15.47810 -14.64009 -14.50593 -14.47387 -14.30333 -14.08158 -13.68019 -13.62806 -13.44233 -13.26748 -13.14974 -12.93399 -12.74480 -12.59147 -12.36268 -12.05991 -11.92329 -11.73449 -11.67428 -11.25701 -10.82160 -10.79843 -10.54564 -9.84090 -9.67301 -9.13829 -8.40089 -6.57980 -0.25012 0.88942 1.11602 1.21501 1.32509 1.35098 1.47334 1.70069 1.76406 2.07968 2.11451 2.31276 2.82931 2.90138 3.30977 3.42296 3.70757 3.77878 3.90606 4.13826 4.21426 4.23373 4.33244 4.51065 4.54104 4.66109 4.70455 4.72779 4.75551 4.78930 4.82303 4.89709 4.90570 4.95180 5.03812 5.16303 5.17419 5.26125 5.46988 5.67700 5.72129 5.91577 5.99488 6.14220 6.17802 6.50387 6.68784 6.94693 7.14139 8.66919 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.010659 B = 0.003763 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2626.360382 B = 7438.927907 C = 9511.740234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.061 3.939 3 C -0.297 4.297 4 C 0.294 3.706 5 N -0.632 5.632 6 C 0.610 3.390 7 O -0.509 6.509 8 C -0.098 4.098 9 O -0.181 6.181 10 C 0.041 3.959 11 C -0.252 4.252 12 C -0.076 4.076 13 C -0.091 4.091 14 C 0.066 3.934 15 O -0.395 6.395 16 C 0.135 3.865 17 N -0.368 5.368 18 C 0.273 3.727 19 C -0.558 4.558 20 H 0.047 0.953 21 C 0.027 3.973 22 N -0.913 5.913 23 Si 0.971 3.029 24 H -0.277 1.277 25 H -0.272 1.272 26 H -0.264 1.264 27 N -0.325 5.325 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.173 0.827 32 H 0.421 0.579 33 H 0.260 0.740 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.121 0.879 38 H 0.130 0.870 39 H 0.088 0.912 40 H 0.030 0.970 41 H 0.043 0.957 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.930 21.463 -0.916 21.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C -0.329 4.329 4 C 0.072 3.928 5 N -0.278 5.278 6 C 0.400 3.600 7 O -0.385 6.385 8 C -0.149 4.149 9 O -0.078 6.078 10 C -0.028 4.028 11 C -0.254 4.254 12 C -0.079 4.079 13 C -0.129 4.129 14 C -0.010 4.010 15 O -0.314 6.314 16 C 0.059 3.941 17 N -0.154 5.154 18 C 0.154 3.846 19 C -0.596 4.596 20 H 0.065 0.935 21 C -0.174 4.174 22 N -0.551 5.551 23 Si 0.794 3.206 24 H -0.202 1.202 25 H -0.198 1.198 26 H -0.189 1.189 27 N -0.150 5.150 28 H 0.105 0.895 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.190 0.810 32 H 0.258 0.742 33 H 0.276 0.724 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.139 0.861 38 H 0.148 0.852 39 H 0.106 0.894 40 H 0.048 0.952 41 H 0.061 0.939 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.563 20.199 -1.121 20.290 hybrid contribution 0.963 -0.524 0.852 1.388 sum 2.526 19.674 -0.269 19.838 Atomic orbital electron populations 1.20249 0.83573 1.04223 1.03856 1.22908 0.98859 0.89807 0.98895 1.21501 0.88644 1.01087 1.21679 1.18353 0.89068 0.82904 1.02492 1.42683 1.08160 1.05571 1.71355 1.16614 0.87229 0.79860 0.76329 1.90755 1.24180 1.73788 1.49821 1.20681 0.82537 0.93115 1.18573 1.84377 1.14897 1.36443 1.72074 1.24652 0.97996 0.82039 0.98079 1.21367 0.92365 0.99846 1.11795 1.20612 0.97679 0.91619 0.97980 1.21009 0.94571 0.93361 1.03920 1.22774 0.87546 0.95347 0.95373 1.87963 1.20045 1.62040 1.61310 1.21327 0.88211 0.81517 1.03013 1.49326 1.06394 1.02585 1.57061 1.19220 0.78555 0.88941 0.97902 1.21434 1.13903 1.32719 0.91523 0.93482 1.25705 0.95266 0.94214 1.02257 1.69998 1.19454 1.32687 1.32988 0.85320 0.78412 0.78343 0.78478 1.20153 1.19758 1.18918 1.77302 0.86221 1.23669 1.27795 0.89534 0.88361 0.90566 0.80974 0.74177 0.72441 0.88913 0.89460 0.91732 0.86065 0.85182 0.89433 0.95189 0.93936 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.68 10.44 71.24 0.74 -0.93 16 2 C 0.06 2.45 7.20 43.07 0.31 2.76 16 3 C -0.30 -12.33 9.58 22.15 0.21 -12.12 16 4 C 0.29 13.11 7.68 131.20 1.01 14.12 16 5 N -0.63 -24.73 5.41 -311.83 -1.69 -26.42 16 6 C 0.61 21.63 7.75 86.43 0.67 22.30 16 7 O -0.51 -18.87 12.76 -4.38 -0.06 -18.92 16 8 C -0.10 -2.93 7.11 23.76 0.17 -2.76 16 9 O -0.18 -4.79 10.44 -14.67 -0.15 -4.94 16 10 C 0.04 0.71 12.05 66.81 0.81 1.51 16 11 C -0.25 -4.74 6.05 -20.11 -0.12 -4.86 16 12 C -0.08 -1.90 6.02 -19.81 -0.12 -2.02 16 13 C -0.09 -1.98 5.71 30.09 0.17 -1.80 16 14 C 0.07 1.05 6.75 72.21 0.49 1.54 16 15 O -0.39 -7.06 10.70 -148.98 -1.59 -8.66 16 16 C 0.14 1.77 7.27 71.25 0.52 2.29 16 17 N -0.37 -18.30 3.62 -348.34 -1.26 -19.56 16 18 C 0.27 14.56 6.02 85.63 0.52 15.08 16 19 C -0.56 -31.40 9.39 25.60 0.24 -31.16 16 20 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 21 C 0.03 1.48 5.46 84.65 0.46 1.94 16 22 N -0.91 -50.90 13.29 21.45 0.28 -50.61 16 23 Si 0.97 42.84 29.54 68.60 2.03 44.86 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 26 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 27 N -0.32 -15.67 12.56 -47.47 -0.60 -16.27 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.17 6.71 5.82 -2.91 -0.02 6.69 16 32 H 0.42 16.14 7.76 -92.71 -0.72 15.42 16 33 H 0.26 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.09 2.12 7.64 -2.39 -0.02 2.10 16 35 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.06 0.90 8.08 -2.39 -0.02 0.88 16 37 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.04 2.23 7.52 -2.39 -0.02 2.21 16 42 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -72.65 360.26 3.39 -69.26 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.36 Total: 25.37 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 6.07 Total: 5.89 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -3.26 Total: -112.86 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -1.80 Total: -32.52 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -72.65 3.39 -69.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795473365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.727 kcal (2) G-P(sol) polarization free energy of solvation -72.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds